Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00858 and BPUM_0576

See Amino acid alignment / Visit BSNT_00858 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:36
# Commandline: needle
#    -asequence dna-align/BSNT_00858___yddH.1.24716.seq
#    -bsequence dna-align/BPUM_0576___yddH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00858___yddH-BPUM_0576___yddH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00858___yddH-BPUM_0576___yddH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00858___yddH
# 2: BPUM_0576___yddH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity:     684/1045 (65.5%)
# Similarity:   684/1045 (65.5%)
# Gaps:         122/1045 (11.7%)
# Score: 2181.0
# 
#
#=======================================

BSNT_00858___      1 TTGATTAAGAGAAAA---TAT------CTTCTATCAATGATATTCTCAGC     41
                        ||     |||||   |||      |||.|.|.|.|       |||  
BPUM_0576___y      1 ---AT-----GAAAAAGCTATTGACGGCTTTTTTTAGT-------TCA--     33

BSNT_00858___     42 CCCTT----TTATCTTCTTTT----------------TTGTTTTATCTAT     71
                       |||    ||||||| ||||                |||||.|||..||
BPUM_0576___y     34 --CTTCCAATTATCTT-TTTTGGGGTAATGCTGCTTATTGTTGTATTGAT     80

BSNT_00858___     72 ATTAGTG----GTTATGACAATTTCAAGAGAAAATCAAGTCGGGGACGAT    117
                     .||.|.|    ||.||.|.|     ||||..|||||              
BPUM_0576___y     81 TTTTGGGGGGAGTAATCAAA-----AAGAAGAAATC--------------    111

BSNT_00858___    118 TTTATAGGCGGTGGGGATGGCGAATATGAAACAGTTGGCATTGCGCCGGA    167
                           ||.||||||||||..||.|.||.||||..|||.|||||.|||||
BPUM_0576___y    112 ------GGTGGTGGGGATGAAGAGTTTGTAACAAATGGTATTGCACCGGA    155

BSNT_00858___    168 AGTGGAA--------CGATTTAGAGCAGTATTTGAGAAATATGCCCGTCA    209
                     ..|.|||        |.||        ||.||.|||||||||||..|..|
BPUM_0576___y    156 GATCGAAAGGCTCCGCCAT--------GTTTTCGAGAAATATGCAAGGAA    197

BSNT_00858___    210 AGAAGGCGTTTTTGACCAAGTGAATATTATTATGGCGCTCACCATGCAAG    259
                     ||||||.||||..||.|||.|||||||.||.||||||||.||.|||||||
BPUM_0576___y    198 AGAAGGGGTTTACGATCAATTGAATATCATAATGGCGCTGACAATGCAAG    247

BSNT_00858___    260 AAAGTGGTGGGCGTTCTTTAGATATCATGCAAAGTTC---CGAAAGTATT    306
                     |||||||.|||||||.|.|.||.|||||||||   ||   ||||...||.
BPUM_0576___y    248 AAAGTGGAGGGCGTTATCTCGACATCATGCAA---TCAAGCGAATCAATA    294

BSNT_00858___    307 GGCTTACCTCCCAACTCCATAACTGACCCAGAACGTTCGATTGAAGTCGG    356
                     ||.||.||.||.||..|.|||||..|.||||||...|||||..|.||.||
BPUM_0576___y    295 GGTTTGCCGCCTAATACGATAACCAATCCAGAATACTCGATACAGGTTGG    344

BSNT_00858___    357 CATTAAACATTTTAAGAAGGTTTTTAAACAGGCTGGCGGTGATGTTCGTT    406
                     .||.||.||||||..|...||.|.||||.|.||.||.||.||||||||.|
BPUM_0576___y    345 TATAAAGCATTTTGCGGCAGTCTATAAAAAAGCAGGTGGAGATGTTCGGT    394

BSNT_00858___    407 TAACCTTACAGGCATACAACTTTGGTTCTGGCTTTATAGATTATGTCAAA    456
                     ||||.||.|||.|.|||||||..||....|||||.|||||.|..||.|||
BPUM_0576___y    395 TAACATTGCAGTCTTACAACTACGGAGGGGGCTTCATAGACTTCGTGAAA    444

BSNT_00858___    457 AAGAATGGCGGGAA--ATACACAAAGAAATTGGCACTTGATTTCAGCCGA    504
                     ||...|||.|||||  ||||| ||||...|| ||.||.||.||.|||..|
BPUM_0576___y    445 AAACGTGGAGGGAAGTATACA-AAAGCTCTT-GCGCTAGAATTTAGCAAA    492

BSNT_00858___    505 TTGCAAGCTTTTAAAATGGGCTGGAAAAGCTACGGTGA-CCCAAGTTATG    553
                     ||.|||||.||.|||.|.||.|||..||||||.||||| ||||| |||||
BPUM_0576___y    493 TTTCAAGCCTTGAAATTAGGTTGGCGAAGCTATGGTGATCCCAA-TTATG    541

BSNT_00858___    554 TTGACCATGTCATGAGGTATGTGAAAGGC-TCTGATAAAAATGTAAAGCC    602
                     ||||..|.|||.|..|||||.|.|||||| .|.|    ||..||.||.||
BPUM_0576___y    542 TTGATAACGTCTTTCGGTATCTAAAAGGCGGCGG----AAGCGTTAAACC    587

BSNT_00858___    603 TGTGAACGGTTCTATGGATTTCTATGAAACGGTC---ATGAAAGAAGCTT    649
                     .|||||.||..||.|.||....||||||   |||   |||||.||||||.
BPUM_0576___y    588 AGTGAATGGAGCTGTTGAAGGGTATGAA---GTCATTATGAATGAAGCTC    634

BSNT_00858___    650 TGAAATATGAAGGGCAACCGTATGCCTGGGGNGGTTCAAACCCGAAAACT    699
                     |.|||||.||||||.|.||.|||...||||. |||||||..||..|.||.
BPUM_0576___y    635 TTAAATACGAAGGGAATCCATATCAATGGGCTGGTTCAACTCCTGATACG    684

BSNT_00858___    700 GGATTTGATTGTTCGGGCCTTGTTCANTGGTCTTTTGCGAAA-GCTGGAA    748
                     ||.|||||||||||.||.|||||||| |||.|||.| .|||| ||.||.|
BPUM_0576___y    685 GGTTTTGATTGTTCTGGACTTGTTCAATGGGCTTAT-AGAAAGGCAGGTA    733

BSNT_00858___    749 TCACTCTTCCAAGAACAGCACANGAACAACATGGNGCAACAAAGAAAATA    798
                     |..|..|.|||||||||||.|| |||||..|||| |||||.||.||.||.
BPUM_0576___y    734 TTTCATTGCCAAGAACAGCCCAAGAACAGTATGGCGCAACTAAAAAGATT    783

BSNT_00858___    799 AGTGAAAAAGAAGCGACTGCGGGTGACTTAGTGTTCTTTGGNGGCACATA    848
                     ..|||||..|||||...|||.||.||.||.|||||||||.. ||.||.||
BPUM_0576___y    784 GCTGAAAGTGAAGCAGTTGCAGGGGATTTGGTGTTCTTTACTGGTACTTA    833

BSNT_00858___    849 NGAAGGAAAAGCCATTACTCACGTCGGNATCTATGTAGGCNATGGCAGAA    898
                      .||||||||..||||||.|||||.|| ||.|||||.||. |.||.||||
BPUM_0576___y    834 TCAAGGAAAATTCATTACACACGTTGGCATATATGTTGGTGAAGGTAGAA    883

BSNT_00858___    899 TGTTTAATTCNAATGACAGTGGAATNGAATATTCTGATCTGAAATCAGGT    948
                     ||||.||||| |||||.|||||..| .||||||||.|..|||||..|||.
BPUM_0576___y    884 TGTTCAATTCTAATGATAGTGGCGTTCAATATTCTCAGTTGAAAAAAGGA    933

BSNT_00858___    949 TACTGGAGAGANCACCTTGTATCTTTTGGACGCATTAAATAA---    990
                     ||.|||||||| |||.|.||.||.|||||||||||.|||..|   
BPUM_0576___y    934 TATTGGAGAGATCACTTAGTTTCATTTGGACGCATAAAACGATAG    978


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