Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00858 and BPUM_0576
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00858___yddH.1.24716.seq
# -bsequence dna-align/BPUM_0576___yddH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00858___yddH-BPUM_0576___yddH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00858___yddH-BPUM_0576___yddH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00858___yddH
# 2: BPUM_0576___yddH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1045
# Identity: 684/1045 (65.5%)
# Similarity: 684/1045 (65.5%)
# Gaps: 122/1045 (11.7%)
# Score: 2181.0
#
#
#=======================================
BSNT_00858___ 1 TTGATTAAGAGAAAA---TAT------CTTCTATCAATGATATTCTCAGC 41
|| ||||| ||| |||.|.|.|.| |||
BPUM_0576___y 1 ---AT-----GAAAAAGCTATTGACGGCTTTTTTTAGT-------TCA-- 33
BSNT_00858___ 42 CCCTT----TTATCTTCTTTT----------------TTGTTTTATCTAT 71
||| ||||||| |||| |||||.|||..||
BPUM_0576___y 34 --CTTCCAATTATCTT-TTTTGGGGTAATGCTGCTTATTGTTGTATTGAT 80
BSNT_00858___ 72 ATTAGTG----GTTATGACAATTTCAAGAGAAAATCAAGTCGGGGACGAT 117
.||.|.| ||.||.|.| ||||..|||||
BPUM_0576___y 81 TTTTGGGGGGAGTAATCAAA-----AAGAAGAAATC-------------- 111
BSNT_00858___ 118 TTTATAGGCGGTGGGGATGGCGAATATGAAACAGTTGGCATTGCGCCGGA 167
||.||||||||||..||.|.||.||||..|||.|||||.|||||
BPUM_0576___y 112 ------GGTGGTGGGGATGAAGAGTTTGTAACAAATGGTATTGCACCGGA 155
BSNT_00858___ 168 AGTGGAA--------CGATTTAGAGCAGTATTTGAGAAATATGCCCGTCA 209
..|.||| |.|| ||.||.|||||||||||..|..|
BPUM_0576___y 156 GATCGAAAGGCTCCGCCAT--------GTTTTCGAGAAATATGCAAGGAA 197
BSNT_00858___ 210 AGAAGGCGTTTTTGACCAAGTGAATATTATTATGGCGCTCACCATGCAAG 259
||||||.||||..||.|||.|||||||.||.||||||||.||.|||||||
BPUM_0576___y 198 AGAAGGGGTTTACGATCAATTGAATATCATAATGGCGCTGACAATGCAAG 247
BSNT_00858___ 260 AAAGTGGTGGGCGTTCTTTAGATATCATGCAAAGTTC---CGAAAGTATT 306
|||||||.|||||||.|.|.||.||||||||| || ||||...||.
BPUM_0576___y 248 AAAGTGGAGGGCGTTATCTCGACATCATGCAA---TCAAGCGAATCAATA 294
BSNT_00858___ 307 GGCTTACCTCCCAACTCCATAACTGACCCAGAACGTTCGATTGAAGTCGG 356
||.||.||.||.||..|.|||||..|.||||||...|||||..|.||.||
BPUM_0576___y 295 GGTTTGCCGCCTAATACGATAACCAATCCAGAATACTCGATACAGGTTGG 344
BSNT_00858___ 357 CATTAAACATTTTAAGAAGGTTTTTAAACAGGCTGGCGGTGATGTTCGTT 406
.||.||.||||||..|...||.|.||||.|.||.||.||.||||||||.|
BPUM_0576___y 345 TATAAAGCATTTTGCGGCAGTCTATAAAAAAGCAGGTGGAGATGTTCGGT 394
BSNT_00858___ 407 TAACCTTACAGGCATACAACTTTGGTTCTGGCTTTATAGATTATGTCAAA 456
||||.||.|||.|.|||||||..||....|||||.|||||.|..||.|||
BPUM_0576___y 395 TAACATTGCAGTCTTACAACTACGGAGGGGGCTTCATAGACTTCGTGAAA 444
BSNT_00858___ 457 AAGAATGGCGGGAA--ATACACAAAGAAATTGGCACTTGATTTCAGCCGA 504
||...|||.||||| ||||| ||||...|| ||.||.||.||.|||..|
BPUM_0576___y 445 AAACGTGGAGGGAAGTATACA-AAAGCTCTT-GCGCTAGAATTTAGCAAA 492
BSNT_00858___ 505 TTGCAAGCTTTTAAAATGGGCTGGAAAAGCTACGGTGA-CCCAAGTTATG 553
||.|||||.||.|||.|.||.|||..||||||.||||| ||||| |||||
BPUM_0576___y 493 TTTCAAGCCTTGAAATTAGGTTGGCGAAGCTATGGTGATCCCAA-TTATG 541
BSNT_00858___ 554 TTGACCATGTCATGAGGTATGTGAAAGGC-TCTGATAAAAATGTAAAGCC 602
||||..|.|||.|..|||||.|.|||||| .|.| ||..||.||.||
BPUM_0576___y 542 TTGATAACGTCTTTCGGTATCTAAAAGGCGGCGG----AAGCGTTAAACC 587
BSNT_00858___ 603 TGTGAACGGTTCTATGGATTTCTATGAAACGGTC---ATGAAAGAAGCTT 649
.|||||.||..||.|.||....|||||| ||| |||||.||||||.
BPUM_0576___y 588 AGTGAATGGAGCTGTTGAAGGGTATGAA---GTCATTATGAATGAAGCTC 634
BSNT_00858___ 650 TGAAATATGAAGGGCAACCGTATGCCTGGGGNGGTTCAAACCCGAAAACT 699
|.|||||.||||||.|.||.|||...||||. |||||||..||..|.||.
BPUM_0576___y 635 TTAAATACGAAGGGAATCCATATCAATGGGCTGGTTCAACTCCTGATACG 684
BSNT_00858___ 700 GGATTTGATTGTTCGGGCCTTGTTCANTGGTCTTTTGCGAAA-GCTGGAA 748
||.|||||||||||.||.|||||||| |||.|||.| .|||| ||.||.|
BPUM_0576___y 685 GGTTTTGATTGTTCTGGACTTGTTCAATGGGCTTAT-AGAAAGGCAGGTA 733
BSNT_00858___ 749 TCACTCTTCCAAGAACAGCACANGAACAACATGGNGCAACAAAGAAAATA 798
|..|..|.|||||||||||.|| |||||..|||| |||||.||.||.||.
BPUM_0576___y 734 TTTCATTGCCAAGAACAGCCCAAGAACAGTATGGCGCAACTAAAAAGATT 783
BSNT_00858___ 799 AGTGAAAAAGAAGCGACTGCGGGTGACTTAGTGTTCTTTGGNGGCACATA 848
..|||||..|||||...|||.||.||.||.|||||||||.. ||.||.||
BPUM_0576___y 784 GCTGAAAGTGAAGCAGTTGCAGGGGATTTGGTGTTCTTTACTGGTACTTA 833
BSNT_00858___ 849 NGAAGGAAAAGCCATTACTCACGTCGGNATCTATGTAGGCNATGGCAGAA 898
.||||||||..||||||.|||||.|| ||.|||||.||. |.||.||||
BPUM_0576___y 834 TCAAGGAAAATTCATTACACACGTTGGCATATATGTTGGTGAAGGTAGAA 883
BSNT_00858___ 899 TGTTTAATTCNAATGACAGTGGAATNGAATATTCTGATCTGAAATCAGGT 948
||||.||||| |||||.|||||..| .||||||||.|..|||||..|||.
BPUM_0576___y 884 TGTTCAATTCTAATGATAGTGGCGTTCAATATTCTCAGTTGAAAAAAGGA 933
BSNT_00858___ 949 TACTGGAGAGANCACCTTGTATCTTTTGGACGCATTAAATAA--- 990
||.|||||||| |||.|.||.||.|||||||||||.|||..|
BPUM_0576___y 934 TATTGGAGAGATCACTTAGTTTCATTTGGACGCATAAAACGATAG 978
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