Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00855 and BPUM_0575

See Amino acid alignment / Visit BSNT_00855 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:36
# Commandline: needle
#    -asequence dna-align/BSNT_00855.1.24716.seq
#    -bsequence dna-align/BPUM_0575___yddG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00855-BPUM_0575___yddG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00855-BPUM_0575___yddG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00855
# 2: BPUM_0575___yddG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2865
# Identity:    1502/2865 (52.4%)
# Similarity:  1502/2865 (52.4%)
# Gaps:         906/2865 (31.6%)
# Score: 3388.0
# 
#
#=======================================

BSNT_00855         1 ATGAAGAA---AAAAAGAATTCTAATTGTGTCGGCTATCGTGTTGCTGTT     47
                     ||||||||   |||...|||..|||.|.|.|..|||.|.|||.||.||.|
BPUM_0575___y      1 ATGAAGAAGAGAAACTTAATAATAACTTTCTTAGCTCTAGTGATGTTGGT     50

BSNT_00855        48 TTTAACTGTCGCTTCAGCTGTAACAGTATTTTCGGCTGAT---------G     88
                     ||         |||   |||||||..|..|||..||||||         |
BPUM_0575___y     51 TT---------CTT---CTGTAACTTTGGTTTTTGCTGATGATAAAGAGG     88

BSNT_00855        89 GAGATACNACGACACAGCCAAAAGTCGAAAAAGCTGGCGGCGTGGA-ATT    137
                     ||||.|. |||....|.||.||..|.|||||.|.|||.||.||.|| .||
BPUM_0575___y     89 GAGACAAGACGGTTAAACCTAAGATTGAAAAGGTTGGTGGTGTTGATCTT    138

BSNT_00855       138 GAAGGTGAAAAG--GTTTCCTATCTCA-CGTTATCAAGCGAATAATGAAG    184
                     |||    |.|||  ||||.|.||...| |.|||||||||..|.|||.|||
BPUM_0575___y    139 GAA----ATAAGTCGTTTTCCATTGGAGCATTATCAAGCTCACAATCAAG    184

BSNT_00855       185 CATCTGACGATTTAATCAAGGGGGCGTTTGTTGGACTGACAAACGTCACT    234
                     |....||||...|.||.||.||.||..|||||...|||.|.||.||.|  
BPUM_0575___y    185 CGGAGGACGGAATGATAAAAGGCGCTATTGTTTCTCTGTCCAATGTAA--    232

BSNT_00855       235 TTTTCTTTTGC-AGG---------AAACATTGTCCGTGTGGTTGATGCGG    274
                             ||| |||         ||..|||||.|.|||.||||||..||
BPUM_0575___y    233 --------TGCTAGGTACGACACAAATAATTGTTCTTGTTGTTGATAAGG    274

BSNT_00855       275 GAATGGATATTTTGTATAACTTGC--AACCAATTGACGAGTTT-GCAAAT    321
                     .||||||| ||.|.|||.| .|||  |||||||..|..|.||| || .|.
BPUM_0575___y    275 CAATGGAT-TTGTTTATGA-GTGCTGAACCAATAAATAACTTTAGC-GAC    321

BSNT_00855       322 TCTATTACAAATGTCTCTAA-------AACA--GTTTATAAAACACTGAA    362
                     .|||||||.|..||||||||       .|||  |||| ||||     |||
BPUM_0575___y    322 GCTATTACGAGCGTCTCTAAGGATATGTACAATGTTT-TAAA-----GAA    365

BSNT_00855       363 AAAGAATTTCGGTGAA--GCTTTATTTATTT-TCACATG-TGCCTATGTT    408
                     |   |.|||.||.|||  ..|||.|.||||| |.|.|.| |.||||    
BPUM_0575___y    366 A---AGTTTTGGAGAAATAATTTTTGTATTTCTGATAGGCTTCCTA----    408

BSNT_00855       409 GTCTACCTGTTCTGTGTAAGAGGTAGCATAAAAGAAGCAATGCGACGGAG    458
                     |||||.||.||.|.|.|||||||.|...|.||.||.|..|||.|.||   
BPUM_0575___y    409 GTCTATCTATTTTTTATAAGAGGCAATTTTAAGGAGGGTATGAGGCG---    455

BSNT_00855       459 TATTCTATTTATTT----GTGTCATGGTGATCGGTGGGCTTTGGATGTCA    504
                      .|||..|||.|||    .|||||||.|..|.|.||||||.|||  ||.|
BPUM_0575___y    456 -TTTCGCTTTGTTTTTCCTTGTCATGATTGTGGCTGGGCTATGG--GTAA    502

BSNT_00855       505 --AACGCTGGTTATTACATGAAAGCGTTG--------AATGCCTTGTCTG    544
                       ||.||.||.||||        |.||||        |||||.||||||.
BPUM_0575___y    503 ATAAAGCGGGATATT--------GGGTTGAATCTCTTAATGCTTTGTCTA    544

BSNT_00855       545 TAGAAGCGCAAGGAAAGCTTTTAACTGCGGGAAATGGATTGGTTG----G    590
                     |.||.|.||||||.||.|||.|.||.|..||||||..||||||||    .
BPUM_0575___y    545 TTGAGGGGCAAGGCAAACTTATTACAGTTGGAAATAAATTGGTTGACTCC    594

BSNT_00855       591 TATTGTGCGTGATGAAGGCAATTTTGCAGACAGTTCT-------GGGAT-    632
                     |.||.||         ||.||    .|.|||..||||       .|||| 
BPUM_0575___y    595 TTTTCTG---------GGAAA----ACCGACTCTTCTTTGAGTATGGATG    631

BSNT_00855       633 ---TGAAAAA-GGAAAAGAAATGGAAGGCACAGTTGCGGTTATGCGTAAT    678
                        ||||||| ||..|||||.|..||||.|||...||||||.|..|.|||
BPUM_0575___y    632 ATGTGAAAAAGGGGCAAGAACTCAAAGGAACAACAGCGGTTTTAAGAAAT    681

BSNT_00855       679 CTTTACTTTGA--CATTGCTTTGATGAAG-CCTTTTTTAATTGTGAATTT    725
                     .||||||||||  ||  ||.|||| .||| ||.|.|||..||...||||.
BPUM_0575___y    682 TTTTACTTTGATGCA--GCGTTGA-AAAGTCCATATTTGGTTACTAATTA    728

BSNT_00855       726 TGATGAAACAAGCGAAAAGAAAATCAATGAGAA----AGATACAGATAAA    771
                     ||.|....|||..|||||.||||| |.|||.||    ||||..||   ||
BPUM_0575___y    729 TGGTACGCCAAATGAAAAAAAAAT-ATTGAAAAAAGGAGATGGAG---AA    774

BSNT_00855       772 GGCGGACTTAATCGTATAGATAAACTGCTTTCTTATAAGCT---------    812
                     ||.||.|||.||||.|||||||..||||||||||.|||.||         
BPUM_0575___y    775 GGTGGTCTTGATCGAATAGATACGCTGCTTTCTTTTAAACTGAACAGTGA    824

BSNT_00855       813 --TTCAGAGGATGGAGAAAAAGA----TAAAAAAGATTATATAAAAGAAA    856
                       .|||.||   .|.||||||||    ||..||.|||       |||.||
BPUM_0575___y    825 GGGTCAAAG---TGCGAAAAAGAAATTTATTAACGAT-------AAGGAA    864

BSNT_00855       857 CTGAAATTGATGAATATAAAAATGAATCTAT----GACTTCTGGAAATGT    902
                     .|.|||     ||||||||||||.|...|||    ||     ||.|| ||
BPUM_0575___y    865 GTCAAA-----GAATATAAAAATCAGAGTATTGCAGA-----GGGAA-GT    903

BSNT_00855       903 GTTTAATCA-------GCTTGGAGAATCTTTTA-----TTGCTGTGGTCG    940
                     .||||..||       |||     |.||.||||     ||||||     |
BPUM_0575___y    904 ATTTACGCACAATTAGGCT-----ATTCATTTATAGGCTTGCTG-----G    943

BSNT_00855       941 CTTCTATTGTTATTGGAATCCCATT-TTTGGCACTA---GCGTTTTTTAA    986
                     ||.|.|||..|.||||..|.||||| |||    |||   .|.|||.||||
BPUM_0575___y    944 CTGCCATTTCTCTTGGTGTACCATTCTTT----CTAATTCCTTTTCTTAA    989

BSNT_00855       987 TTTCTTGCTTCAAGTTGTTG--CTTTAGTCATTGTCTT-TTTCGTACCAT   1033
                     |||||||.|||||.||.|||  |||  |..||||.||| |||| |.|||.
BPUM_0575___y    990 TTTCTTGATTCAAATTATTGTACTT--GCGATTGCCTTGTTTC-TTCCAA   1036

BSNT_00855      1034 TCGCTTTCATATTAGCGTATGTTCCCCAATTAGCTTACTCTGGATTTGTC   1083
                     |.||.|||||..|..|.||.||||||||.||.|||||....|||||.||.
BPUM_0575___y   1037 TGGCGTTCATTCTTTCCTACGTTCCCCAGTTTGCTTATAGCGGATTCGTG   1086

BSNT_00855      1084 ACTCTTGGACGTTTGGGGAGTG-----TTTATCT---ACTGAAAGCAATG   1125
                     .|.||.|||      .||| ||     |||||.|   | |||||||.|||
BPUM_0575___y   1087 TCGCTAGGA------AGGA-TGCTTGCTTTATTTGTGA-TGAAAGCTATG   1128

BSNT_00855      1126 -TTAGGTATTATTGTTCTG---TTTGTGTACGTGACATGTTTTATCGTTG   1171
                      |.|..|    |||||.||   |||||.||.|   ||..||.|.||.|| 
BPUM_0575___y   1129 CTCACAT----TTGTTTTGATATTTGTTTATG---CAATTTGTGTCATT-   1170

BSNT_00855      1172 ACAAGTTAATACC--TC------CAAACGGTTTCGGAATGTATCTTTTGA   1213
                     |||| .|||.|||  ||      ||||   |||.||.|||||..||||.|
BPUM_0575___y   1171 ACAA-ATAAAACCATTCCGCCAACAAA---TTTAGGGATGTACTTTTTAA   1216

BSNT_00855      1214 ATGTTGCTGTCCTTGCCT-------CAATT-TTGTGGATTGGT--TTTC-   1252
                     ||||.||.|       ||       ||||| ||    ||||.|  |||| 
BPUM_0575___y   1217 ATGTGGCAG-------CTATATCAGCAATTCTT----ATTGTTTCTTTCT   1255

BSNT_00855      1253 ----ACAAGAGGGATGCTATTATCAAGTTTGTGACTGCTGGAAAAGTAGT   1298
                         ||    |.|||...||||||||.||||||||||||||.||||    
BPUM_0575___y   1256 TGAAAC----GTGATAAGATTATCAAATTTGTGACTGCTGGTAAAG----   1297

BSNT_00855      1299 TTCA----GTTGATAATAATATGATGGAAAACATGAGACAAAACA--TTG   1342
                     ||||    ||.|||..|||..|..|.|||||.|..||  ||||||  |.|
BPUM_0575___y   1298 TTCAATCTGTGGATGCTAACCTTCTTGAAAATACAAG--AAAACAGGTAG   1345

BSNT_00855      1343 TTCAGCCTGCTTGGGAACAAGCAAAGAAAATAGGTGGAGTATGGGGTAAC   1392
                     |.||||||.|.||||||...||   |||||.||.|  |||| |.||||  
BPUM_0575___y   1346 TACAGCCTTCATGGGAAGGTGC---GAAAAAAGTT--AGTA-GTGGTA--   1387

BSNT_00855      1393 GGAGGCGGCGTATTTACTGACTTTACAAAGCATTTTGGGGGAAGAAAAGA   1442
                                  ||..|||.|                 ||||.||.|.|
BPUM_0575___y   1388 -------------TTGGTGAAT-----------------GGAAAAAGAAA   1407

BSNT_00855      1443 CGGTTCGAATGCTGATGGCGTAACTGGTGCTCCAAGTGGTGGCGG--CAA   1490
                     ||          |||||..|.||.||.|.||          ||.|  |||
BPUM_0575___y   1408 CG----------TGATGCTGCAAATGCTTCT----------GCCGAACAA   1437

BSNT_00855      1491 TTCACCGAGTGGGGCTGCTATGGGATATGATAATACTCACGCCATTTCAA   1540
                     |                ||.|||||.||.||||     |||       ||
BPUM_0575___y   1438 T----------------CTTTGGGAGATAATAA-----ACG-------AA   1459

BSNT_00855      1541 GAACTCCACAAAA----------AGAGACTGCTAACGGAATAGCTAG---   1577
                     |..|.||.||.||          .|||| |.||||   |||.|.|||   
BPUM_0575___y   1460 GTGCGCCGCACAATCAATCTGTTGGAGA-TTCTAA---AATTGATAGGAC   1505

BSNT_00855      1578 -TCA--------------TAA--------CAGCCGC--------AACTTA   1596
                      |||              |||        ||||.||        |||||.
BPUM_0575___y   1506 TTCACAGAATAACCCTATTAAGGGGGATGCAGCGGCGAAAAAAGAACTTG   1555

BSNT_00855      1597 AAACGAAATCCTCAA-------ACTCTATCGAAAGAACAA---------G   1630
                     ||| ||||.|.||||       .|||||       |.|||         |
BPUM_0575___y   1556 AAA-GAAAGCGTCAATTAGCAGCCTCTA-------ATCAATTGGCGGAGG   1597

BSNT_00855      1631 AAAAGCAAAAACAA-AAGGAAGCCTTTGCAAATG------CAAAA---GA   1670
                     |||| ||||.|.|| |..||.||   |.||||||      |.|||   ||
BPUM_0575___y   1598 AAAA-CAAAGATAATACAGATGC---TTCAAATGTTATGCCGAAAGTGGA   1643

BSNT_00855      1671 T---------AATAAACAGCAATCCCATTTA-GACAGAT----TGAGAAA   1706
                     |         |.|.||||        |.||| .|.||||    |||.|.|
BPUM_0575___y   1644 TGTTGAAAGAAGTGAACA--------ACTTACTAAAGATCAACTGAAAGA   1685

BSNT_00855      1707 AGACGG-------GATA-AACT-CTCC------TATGCTGAAA---GATG   1738
                     .||.||       .||| ||.| ||.|      |||||.||||   ||||
BPUM_0575___y   1686 GGAAGGTGACAGTAATACAAGTGCTTCAAATGTTATGCCGAAAGTGGATG   1735

BSNT_00855      1739 CTTTGAATGAAG------------------------GAAATGAGGA----   1760
                       |||||.||||                        |||| |||||    
BPUM_0575___y   1736 --TTGAAAGAAGTGAACAGCTTGCTAAAGATCAACTGAAA-GAGGAAGGT   1782

BSNT_00855      1761 ---------------------TTTAT-CCAAACGAGCACCTATCTTGCAG   1788
                                          .|.|| |||||.|.|    .||.|||   
BPUM_0575___y   1783 GACAGTAATAGTGCTTCGAATGTCATGCCAAAAGTG----GATGTTG---   1825

BSNT_00855      1789 GATAAAAAGGA-TGAATCAGCTAG--AACAGATCAA---AAAGAATATGT   1832
                          ||||.| |||| |||||.|  || |||||||   ||||||.|.|.
BPUM_0575___y   1826 -----AAAGAAGTGAA-CAGCTTGCTAA-AGATCAACTGAAAGAAGAAGG   1868

BSNT_00855      1833 TGA-------ACA---GCTTCTTAAACAGCCAGATAATC-----------   1861
                     |||       |||   ||||||  |||     |.||.||           
BPUM_0575___y   1869 TGACAGTAATACAAGTGCTTCT--AAC-----GTTATTCCTAAAGTTGAT   1911

BSNT_00855      1862 ------AGAAACAAA-------CTGACGATGCATCATTACAACTTGAAGA   1898
                           |||||..||       ||.|.|||         |||||..||||
BPUM_0575___y   1912 GTAGAGAGAAATGAACAGCTTGCTAAAGAT---------CAACTGAAAGA   1952

BSNT_00855      1899 AGAA------------------ACTACTTCTAATCGAGCACCAGTCTTAC   1930
                     ||||                  .||.||||.|||     .|||.||.|| 
BPUM_0575___y   1953 AGAAGGCGACAATAATACAAATGCTGCTTCAAAT-----GCCATTCCTA-   1996

BSNT_00855      1931 AAGAGAGTG-AGAAAGAAACAGAACGTACAGACCAA---AAGGCATATGT   1976
                     |||.|..|| |||.||||       ||   ||.|||   ||.|.|.||.|
BPUM_0575___y   1997 AAGTGGATGTAGAGAGAA-------GT---GATCAAATTAAAGAACATAT   2036

BSNT_00855      1977 TCATGAAG--GACAAAACCAGAATACTGAAACTGAA-----AAACA----   2015
                     |...||||  ||.||.|||  ||||.|    |.|||     .||||    
BPUM_0575___y   2037 TGCCGAAGAAGAAAAGACC--AATAGT----CCGAAGGGTTCAACATCAA   2080

BSNT_00855      2016 -TCATGACTTTGAAGTTCAGAAAGATGATTCTGTTTCAAAGAGTGAGCCA   2064
                      ||||||..||||.|||  ||||||                ||.||.|  
BPUM_0575___y   2081 TTCATGAGGTTGATGTT--GAAAGA----------------AGCGATC--   2110

BSNT_00855      2065 GTAGCACAAGAGAAGACA--GCAGAAATCAAAAG--ATCAGACCAAAAAG   2110
                                 |||.||  .|.||||  |||.|  |.||||..||||..
BPUM_0575___y   2111 ------------AAGGCATTTCTGAAA--AAACGTTAACAGAGGAAAATA   2146

BSNT_00855      2111 TCATGACG-AATCAA---TCTGAACCGCAGCTCGGCTTTGAAAGTCCT--   2154
                     |||    | ||||||   ||||                ||  ||||||  
BPUM_0575___y   2147 TCA----GTAATCAAAATTCTG----------------TG--AGTCCTGT   2174

BSNT_00855      2155 --CAATCTACAAAAGTAGAAAATCAGTCTATTGCCAA-TAACGAACGTAA   2201
                       ||| .|||.||.||||                ||| .||.||||    
BPUM_0575___y   2175 TCCAA-ATACTAACGTAG----------------CAAGAAATGAAC----   2203

BSNT_00855      2202 AATCAGACCATCTGAACCAGCAAAAGTTCATTCAGATGGTATTCGTGTTG   2251
                     ||  ||||.|||.||   ||.||||||...|.||..||   |||      
BPUM_0575___y   2204 AA--AGACAATCAGA---AGAAAAAGTAAGTGCATCTG---TTC------   2239

BSNT_00855      2252 AGGAAAAACAGGCTGTTGCCCCTGCTGAAAGTAAGACTGTATCAAG----   2297
                       .|||||                ||||||.|.|.||.|  |.|||    
BPUM_0575___y   2240 --CAAAAA----------------CTGAAAATGAAACAG--TTAAGACGT   2269

BSNT_00855      2298 -AGAAAAACAGCCTTCATCACAAAACATTAAACGGACTGAACAAAGTGTT   2346
                      |||.|.|||      |.|| |||||  ||            ||||.|||
BPUM_0575___y   2270 CAGATACACA------AGCA-AAAAC--TA------------AAAGAGTT   2298

BSNT_00855      2347 AATACATTTGACCAA-------GTGTCTTTGAATGAAATTGCA--AGACG   2387
                     |      ||.|.|||       .|||     ||  ||||||.|  ||   
BPUM_0575___y   2299 A------TTCAGCAACCCAAACATGT-----AA--AAATTGAATTAG---   2332

BSNT_00855      2388 CTCTTCATCAAAAGTAGAAGA-TCGACTGAG----AAGGGACGAG-----   2427
                           ||||.|  ||| ||| |||.|..||    ||.||.||||     
BPUM_0575___y   2333 ------ATCAGA--TAG-AGAGTCGTCAAAGCAAAAATGGTCGAGGTGAC   2373

BSNT_00855      2428 AGAAAAACGTTATAA   2442
                     |||      |.||.|
BPUM_0575___y   2374 AGA------TCATGA   2382


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