Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00855 and BPUM_0575
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00855.1.24716.seq
# -bsequence dna-align/BPUM_0575___yddG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00855-BPUM_0575___yddG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00855-BPUM_0575___yddG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00855
# 2: BPUM_0575___yddG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2865
# Identity: 1502/2865 (52.4%)
# Similarity: 1502/2865 (52.4%)
# Gaps: 906/2865 (31.6%)
# Score: 3388.0
#
#
#=======================================
BSNT_00855 1 ATGAAGAA---AAAAAGAATTCTAATTGTGTCGGCTATCGTGTTGCTGTT 47
|||||||| |||...|||..|||.|.|.|..|||.|.|||.||.||.|
BPUM_0575___y 1 ATGAAGAAGAGAAACTTAATAATAACTTTCTTAGCTCTAGTGATGTTGGT 50
BSNT_00855 48 TTTAACTGTCGCTTCAGCTGTAACAGTATTTTCGGCTGAT---------G 88
|| ||| |||||||..|..|||..|||||| |
BPUM_0575___y 51 TT---------CTT---CTGTAACTTTGGTTTTTGCTGATGATAAAGAGG 88
BSNT_00855 89 GAGATACNACGACACAGCCAAAAGTCGAAAAAGCTGGCGGCGTGGA-ATT 137
||||.|. |||....|.||.||..|.|||||.|.|||.||.||.|| .||
BPUM_0575___y 89 GAGACAAGACGGTTAAACCTAAGATTGAAAAGGTTGGTGGTGTTGATCTT 138
BSNT_00855 138 GAAGGTGAAAAG--GTTTCCTATCTCA-CGTTATCAAGCGAATAATGAAG 184
||| |.||| ||||.|.||...| |.|||||||||..|.|||.|||
BPUM_0575___y 139 GAA----ATAAGTCGTTTTCCATTGGAGCATTATCAAGCTCACAATCAAG 184
BSNT_00855 185 CATCTGACGATTTAATCAAGGGGGCGTTTGTTGGACTGACAAACGTCACT 234
|....||||...|.||.||.||.||..|||||...|||.|.||.||.|
BPUM_0575___y 185 CGGAGGACGGAATGATAAAAGGCGCTATTGTTTCTCTGTCCAATGTAA-- 232
BSNT_00855 235 TTTTCTTTTGC-AGG---------AAACATTGTCCGTGTGGTTGATGCGG 274
||| ||| ||..|||||.|.|||.||||||..||
BPUM_0575___y 233 --------TGCTAGGTACGACACAAATAATTGTTCTTGTTGTTGATAAGG 274
BSNT_00855 275 GAATGGATATTTTGTATAACTTGC--AACCAATTGACGAGTTT-GCAAAT 321
.||||||| ||.|.|||.| .||| |||||||..|..|.||| || .|.
BPUM_0575___y 275 CAATGGAT-TTGTTTATGA-GTGCTGAACCAATAAATAACTTTAGC-GAC 321
BSNT_00855 322 TCTATTACAAATGTCTCTAA-------AACA--GTTTATAAAACACTGAA 362
.|||||||.|..|||||||| .||| |||| |||| |||
BPUM_0575___y 322 GCTATTACGAGCGTCTCTAAGGATATGTACAATGTTT-TAAA-----GAA 365
BSNT_00855 363 AAAGAATTTCGGTGAA--GCTTTATTTATTT-TCACATG-TGCCTATGTT 408
| |.|||.||.||| ..|||.|.||||| |.|.|.| |.||||
BPUM_0575___y 366 A---AGTTTTGGAGAAATAATTTTTGTATTTCTGATAGGCTTCCTA---- 408
BSNT_00855 409 GTCTACCTGTTCTGTGTAAGAGGTAGCATAAAAGAAGCAATGCGACGGAG 458
|||||.||.||.|.|.|||||||.|...|.||.||.|..|||.|.||
BPUM_0575___y 409 GTCTATCTATTTTTTATAAGAGGCAATTTTAAGGAGGGTATGAGGCG--- 455
BSNT_00855 459 TATTCTATTTATTT----GTGTCATGGTGATCGGTGGGCTTTGGATGTCA 504
.|||..|||.||| .|||||||.|..|.|.||||||.||| ||.|
BPUM_0575___y 456 -TTTCGCTTTGTTTTTCCTTGTCATGATTGTGGCTGGGCTATGG--GTAA 502
BSNT_00855 505 --AACGCTGGTTATTACATGAAAGCGTTG--------AATGCCTTGTCTG 544
||.||.||.|||| |.|||| |||||.||||||.
BPUM_0575___y 503 ATAAAGCGGGATATT--------GGGTTGAATCTCTTAATGCTTTGTCTA 544
BSNT_00855 545 TAGAAGCGCAAGGAAAGCTTTTAACTGCGGGAAATGGATTGGTTG----G 590
|.||.|.||||||.||.|||.|.||.|..||||||..|||||||| .
BPUM_0575___y 545 TTGAGGGGCAAGGCAAACTTATTACAGTTGGAAATAAATTGGTTGACTCC 594
BSNT_00855 591 TATTGTGCGTGATGAAGGCAATTTTGCAGACAGTTCT-------GGGAT- 632
|.||.|| ||.|| .|.|||..|||| .||||
BPUM_0575___y 595 TTTTCTG---------GGAAA----ACCGACTCTTCTTTGAGTATGGATG 631
BSNT_00855 633 ---TGAAAAA-GGAAAAGAAATGGAAGGCACAGTTGCGGTTATGCGTAAT 678
||||||| ||..|||||.|..||||.|||...||||||.|..|.|||
BPUM_0575___y 632 ATGTGAAAAAGGGGCAAGAACTCAAAGGAACAACAGCGGTTTTAAGAAAT 681
BSNT_00855 679 CTTTACTTTGA--CATTGCTTTGATGAAG-CCTTTTTTAATTGTGAATTT 725
.|||||||||| || ||.|||| .||| ||.|.|||..||...||||.
BPUM_0575___y 682 TTTTACTTTGATGCA--GCGTTGA-AAAGTCCATATTTGGTTACTAATTA 728
BSNT_00855 726 TGATGAAACAAGCGAAAAGAAAATCAATGAGAA----AGATACAGATAAA 771
||.|....|||..|||||.||||| |.|||.|| ||||..|| ||
BPUM_0575___y 729 TGGTACGCCAAATGAAAAAAAAAT-ATTGAAAAAAGGAGATGGAG---AA 774
BSNT_00855 772 GGCGGACTTAATCGTATAGATAAACTGCTTTCTTATAAGCT--------- 812
||.||.|||.||||.|||||||..||||||||||.|||.||
BPUM_0575___y 775 GGTGGTCTTGATCGAATAGATACGCTGCTTTCTTTTAAACTGAACAGTGA 824
BSNT_00855 813 --TTCAGAGGATGGAGAAAAAGA----TAAAAAAGATTATATAAAAGAAA 856
.|||.|| .|.|||||||| ||..||.||| |||.||
BPUM_0575___y 825 GGGTCAAAG---TGCGAAAAAGAAATTTATTAACGAT-------AAGGAA 864
BSNT_00855 857 CTGAAATTGATGAATATAAAAATGAATCTAT----GACTTCTGGAAATGT 902
.|.||| ||||||||||||.|...||| || ||.|| ||
BPUM_0575___y 865 GTCAAA-----GAATATAAAAATCAGAGTATTGCAGA-----GGGAA-GT 903
BSNT_00855 903 GTTTAATCA-------GCTTGGAGAATCTTTTA-----TTGCTGTGGTCG 940
.||||..|| ||| |.||.|||| |||||| |
BPUM_0575___y 904 ATTTACGCACAATTAGGCT-----ATTCATTTATAGGCTTGCTG-----G 943
BSNT_00855 941 CTTCTATTGTTATTGGAATCCCATT-TTTGGCACTA---GCGTTTTTTAA 986
||.|.|||..|.||||..|.||||| ||| ||| .|.|||.||||
BPUM_0575___y 944 CTGCCATTTCTCTTGGTGTACCATTCTTT----CTAATTCCTTTTCTTAA 989
BSNT_00855 987 TTTCTTGCTTCAAGTTGTTG--CTTTAGTCATTGTCTT-TTTCGTACCAT 1033
|||||||.|||||.||.||| ||| |..||||.||| |||| |.|||.
BPUM_0575___y 990 TTTCTTGATTCAAATTATTGTACTT--GCGATTGCCTTGTTTC-TTCCAA 1036
BSNT_00855 1034 TCGCTTTCATATTAGCGTATGTTCCCCAATTAGCTTACTCTGGATTTGTC 1083
|.||.|||||..|..|.||.||||||||.||.|||||....|||||.||.
BPUM_0575___y 1037 TGGCGTTCATTCTTTCCTACGTTCCCCAGTTTGCTTATAGCGGATTCGTG 1086
BSNT_00855 1084 ACTCTTGGACGTTTGGGGAGTG-----TTTATCT---ACTGAAAGCAATG 1125
.|.||.||| .||| || |||||.| | |||||||.|||
BPUM_0575___y 1087 TCGCTAGGA------AGGA-TGCTTGCTTTATTTGTGA-TGAAAGCTATG 1128
BSNT_00855 1126 -TTAGGTATTATTGTTCTG---TTTGTGTACGTGACATGTTTTATCGTTG 1171
|.|..| |||||.|| |||||.||.| ||..||.|.||.||
BPUM_0575___y 1129 CTCACAT----TTGTTTTGATATTTGTTTATG---CAATTTGTGTCATT- 1170
BSNT_00855 1172 ACAAGTTAATACC--TC------CAAACGGTTTCGGAATGTATCTTTTGA 1213
|||| .|||.||| || |||| |||.||.|||||..||||.|
BPUM_0575___y 1171 ACAA-ATAAAACCATTCCGCCAACAAA---TTTAGGGATGTACTTTTTAA 1216
BSNT_00855 1214 ATGTTGCTGTCCTTGCCT-------CAATT-TTGTGGATTGGT--TTTC- 1252
||||.||.| || ||||| || ||||.| ||||
BPUM_0575___y 1217 ATGTGGCAG-------CTATATCAGCAATTCTT----ATTGTTTCTTTCT 1255
BSNT_00855 1253 ----ACAAGAGGGATGCTATTATCAAGTTTGTGACTGCTGGAAAAGTAGT 1298
|| |.|||...||||||||.||||||||||||||.||||
BPUM_0575___y 1256 TGAAAC----GTGATAAGATTATCAAATTTGTGACTGCTGGTAAAG---- 1297
BSNT_00855 1299 TTCA----GTTGATAATAATATGATGGAAAACATGAGACAAAACA--TTG 1342
|||| ||.|||..|||..|..|.|||||.|..|| |||||| |.|
BPUM_0575___y 1298 TTCAATCTGTGGATGCTAACCTTCTTGAAAATACAAG--AAAACAGGTAG 1345
BSNT_00855 1343 TTCAGCCTGCTTGGGAACAAGCAAAGAAAATAGGTGGAGTATGGGGTAAC 1392
|.||||||.|.||||||...|| |||||.||.| |||| |.||||
BPUM_0575___y 1346 TACAGCCTTCATGGGAAGGTGC---GAAAAAAGTT--AGTA-GTGGTA-- 1387
BSNT_00855 1393 GGAGGCGGCGTATTTACTGACTTTACAAAGCATTTTGGGGGAAGAAAAGA 1442
||..|||.| ||||.||.|.|
BPUM_0575___y 1388 -------------TTGGTGAAT-----------------GGAAAAAGAAA 1407
BSNT_00855 1443 CGGTTCGAATGCTGATGGCGTAACTGGTGCTCCAAGTGGTGGCGG--CAA 1490
|| |||||..|.||.||.|.|| ||.| |||
BPUM_0575___y 1408 CG----------TGATGCTGCAAATGCTTCT----------GCCGAACAA 1437
BSNT_00855 1491 TTCACCGAGTGGGGCTGCTATGGGATATGATAATACTCACGCCATTTCAA 1540
| ||.|||||.||.|||| ||| ||
BPUM_0575___y 1438 T----------------CTTTGGGAGATAATAA-----ACG-------AA 1459
BSNT_00855 1541 GAACTCCACAAAA----------AGAGACTGCTAACGGAATAGCTAG--- 1577
|..|.||.||.|| .|||| |.|||| |||.|.|||
BPUM_0575___y 1460 GTGCGCCGCACAATCAATCTGTTGGAGA-TTCTAA---AATTGATAGGAC 1505
BSNT_00855 1578 -TCA--------------TAA--------CAGCCGC--------AACTTA 1596
||| ||| ||||.|| |||||.
BPUM_0575___y 1506 TTCACAGAATAACCCTATTAAGGGGGATGCAGCGGCGAAAAAAGAACTTG 1555
BSNT_00855 1597 AAACGAAATCCTCAA-------ACTCTATCGAAAGAACAA---------G 1630
||| ||||.|.|||| .||||| |.||| |
BPUM_0575___y 1556 AAA-GAAAGCGTCAATTAGCAGCCTCTA-------ATCAATTGGCGGAGG 1597
BSNT_00855 1631 AAAAGCAAAAACAA-AAGGAAGCCTTTGCAAATG------CAAAA---GA 1670
|||| ||||.|.|| |..||.|| |.|||||| |.||| ||
BPUM_0575___y 1598 AAAA-CAAAGATAATACAGATGC---TTCAAATGTTATGCCGAAAGTGGA 1643
BSNT_00855 1671 T---------AATAAACAGCAATCCCATTTA-GACAGAT----TGAGAAA 1706
| |.|.|||| |.||| .|.|||| |||.|.|
BPUM_0575___y 1644 TGTTGAAAGAAGTGAACA--------ACTTACTAAAGATCAACTGAAAGA 1685
BSNT_00855 1707 AGACGG-------GATA-AACT-CTCC------TATGCTGAAA---GATG 1738
.||.|| .||| ||.| ||.| |||||.|||| ||||
BPUM_0575___y 1686 GGAAGGTGACAGTAATACAAGTGCTTCAAATGTTATGCCGAAAGTGGATG 1735
BSNT_00855 1739 CTTTGAATGAAG------------------------GAAATGAGGA---- 1760
|||||.|||| |||| |||||
BPUM_0575___y 1736 --TTGAAAGAAGTGAACAGCTTGCTAAAGATCAACTGAAA-GAGGAAGGT 1782
BSNT_00855 1761 ---------------------TTTAT-CCAAACGAGCACCTATCTTGCAG 1788
.|.|| |||||.|.| .||.|||
BPUM_0575___y 1783 GACAGTAATAGTGCTTCGAATGTCATGCCAAAAGTG----GATGTTG--- 1825
BSNT_00855 1789 GATAAAAAGGA-TGAATCAGCTAG--AACAGATCAA---AAAGAATATGT 1832
||||.| |||| |||||.| || ||||||| ||||||.|.|.
BPUM_0575___y 1826 -----AAAGAAGTGAA-CAGCTTGCTAA-AGATCAACTGAAAGAAGAAGG 1868
BSNT_00855 1833 TGA-------ACA---GCTTCTTAAACAGCCAGATAATC----------- 1861
||| ||| |||||| ||| |.||.||
BPUM_0575___y 1869 TGACAGTAATACAAGTGCTTCT--AAC-----GTTATTCCTAAAGTTGAT 1911
BSNT_00855 1862 ------AGAAACAAA-------CTGACGATGCATCATTACAACTTGAAGA 1898
|||||..|| ||.|.||| |||||..||||
BPUM_0575___y 1912 GTAGAGAGAAATGAACAGCTTGCTAAAGAT---------CAACTGAAAGA 1952
BSNT_00855 1899 AGAA------------------ACTACTTCTAATCGAGCACCAGTCTTAC 1930
|||| .||.||||.||| .|||.||.||
BPUM_0575___y 1953 AGAAGGCGACAATAATACAAATGCTGCTTCAAAT-----GCCATTCCTA- 1996
BSNT_00855 1931 AAGAGAGTG-AGAAAGAAACAGAACGTACAGACCAA---AAGGCATATGT 1976
|||.|..|| |||.|||| || ||.||| ||.|.|.||.|
BPUM_0575___y 1997 AAGTGGATGTAGAGAGAA-------GT---GATCAAATTAAAGAACATAT 2036
BSNT_00855 1977 TCATGAAG--GACAAAACCAGAATACTGAAACTGAA-----AAACA---- 2015
|...|||| ||.||.||| ||||.| |.||| .||||
BPUM_0575___y 2037 TGCCGAAGAAGAAAAGACC--AATAGT----CCGAAGGGTTCAACATCAA 2080
BSNT_00855 2016 -TCATGACTTTGAAGTTCAGAAAGATGATTCTGTTTCAAAGAGTGAGCCA 2064
||||||..||||.||| |||||| ||.||.|
BPUM_0575___y 2081 TTCATGAGGTTGATGTT--GAAAGA----------------AGCGATC-- 2110
BSNT_00855 2065 GTAGCACAAGAGAAGACA--GCAGAAATCAAAAG--ATCAGACCAAAAAG 2110
|||.|| .|.|||| |||.| |.||||..||||..
BPUM_0575___y 2111 ------------AAGGCATTTCTGAAA--AAACGTTAACAGAGGAAAATA 2146
BSNT_00855 2111 TCATGACG-AATCAA---TCTGAACCGCAGCTCGGCTTTGAAAGTCCT-- 2154
||| | |||||| |||| || ||||||
BPUM_0575___y 2147 TCA----GTAATCAAAATTCTG----------------TG--AGTCCTGT 2174
BSNT_00855 2155 --CAATCTACAAAAGTAGAAAATCAGTCTATTGCCAA-TAACGAACGTAA 2201
||| .|||.||.|||| ||| .||.||||
BPUM_0575___y 2175 TCCAA-ATACTAACGTAG----------------CAAGAAATGAAC---- 2203
BSNT_00855 2202 AATCAGACCATCTGAACCAGCAAAAGTTCATTCAGATGGTATTCGTGTTG 2251
|| ||||.|||.|| ||.||||||...|.||..|| |||
BPUM_0575___y 2204 AA--AGACAATCAGA---AGAAAAAGTAAGTGCATCTG---TTC------ 2239
BSNT_00855 2252 AGGAAAAACAGGCTGTTGCCCCTGCTGAAAGTAAGACTGTATCAAG---- 2297
.||||| ||||||.|.|.||.| |.|||
BPUM_0575___y 2240 --CAAAAA----------------CTGAAAATGAAACAG--TTAAGACGT 2269
BSNT_00855 2298 -AGAAAAACAGCCTTCATCACAAAACATTAAACGGACTGAACAAAGTGTT 2346
|||.|.||| |.|| ||||| || ||||.|||
BPUM_0575___y 2270 CAGATACACA------AGCA-AAAAC--TA------------AAAGAGTT 2298
BSNT_00855 2347 AATACATTTGACCAA-------GTGTCTTTGAATGAAATTGCA--AGACG 2387
| ||.|.||| .||| || ||||||.| ||
BPUM_0575___y 2299 A------TTCAGCAACCCAAACATGT-----AA--AAATTGAATTAG--- 2332
BSNT_00855 2388 CTCTTCATCAAAAGTAGAAGA-TCGACTGAG----AAGGGACGAG----- 2427
||||.| ||| ||| |||.|..|| ||.||.||||
BPUM_0575___y 2333 ------ATCAGA--TAG-AGAGTCGTCAAAGCAAAAATGGTCGAGGTGAC 2373
BSNT_00855 2428 AGAAAAACGTTATAA 2442
||| |.||.|
BPUM_0575___y 2374 AGA------TCATGA 2382
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