Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00850 and BPUM_0574
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00850.1.24716.seq
# -bsequence dna-align/BPUM_0574___yddE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00850-BPUM_0574___yddE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00850-BPUM_0574___yddE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00850
# 2: BPUM_0574___yddE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2549
# Identity: 892/2549 (35.0%)
# Similarity: 892/2549 (35.0%)
# Gaps: 1381/2549 (54.2%)
# Score: 2672.0
#
#
#=======================================
BSNT_00850 0 -------------------------------------------------- 0
BPUM_0574___y 1 TTGATTTTGACGAGATCCGGTGATGTTTGGGCGTATTATCGGATCAAGAG 50
BSNT_00850 1 -------AT------GCAAAAT-AAAGAAAAAGTTGAATCGTATAAAA-- 34
|| .|||||| ||||.||.| ||||| |.|||.||
BPUM_0574___y 51 TAGTTCTATTCCCTCTCAAAATCAAAGTAAGA-TTGAA--GAATACAAGG 97
BSNT_00850 35 AGAAGTGGCAGCATC--TTTTTGAAGAAATTACATCTTATGAGGATTTTC 82
|.||.||| .|.|| |||.||||||.||||||...|||||.|||||||
BPUM_0574___y 98 ATAAATGG--ACTTCGTTTTATGAAGATATTACAGAGTATGAAGATTTTC 145
BSNT_00850 83 ACTTGATGATGTATCCAAGTGAGTATGAATTAGAAAAACGA--TTTAAGG 130
|||||||||||||.|| |.||||||| ||| ||.||||
BPUM_0574___y 146 ACTTGATGATGTACCC------GAATGAATT-------CGATCTTGAAGG 182
BSNT_00850 131 A--TTTA--------GAAACA-GATAT---TGCGGCAGATGCAATGGATG 166
| |||| ||||.| ||||| ||.| |||||..|.||.|
BPUM_0574___y 183 ACGTTTAAATGTATTGAAAAAGGATATACATGAG---GATGCTTTTGACG 229
BSNT_00850 167 TGGCACGTTACTACAATG-AAGAAACGGTAAGGCTGT--TAGAACAGCGA 213
||||....||||| .||| |||||||.||.|| ||| |.||.|||||.
BPUM_0574___y 230 TGGCTTCATACTA-TATGCAAGAAACAGTTAG--TGTAATGGATCAGCGT 276
BSNT_00850 214 TTAGGAAGGCTGA-CAAAGTATGACTTCA-TATTAGGT-----GTAAAAC 256
|||||.||..||| ||||..| ||.|||| |||| ||| ||.||||
BPUM_0574___y 277 TTAGGGAGATTGACCAAACCA-GATTTCATTATT-GGTATTAAGTTAAAC 324
BSNT_00850 257 TGAAAAGCAGTCTTGTAAATATTAGTGTCGAACTTAAAGACAATATATTA 306
|||.|| |||.|||.|||...||.|||..|.||||||||..||.|.
BPUM_0574___y 325 ---AAAACA--CTTCTAAGTATGGATGCCGATATGAAAGACAACCTAGTT 369
BSNT_00850 307 TCTTTTTTCAATACAGCGACTGATACAGTCGTGAAAATGCTCGGGTGGGA 356
||..|.||..|||||||.|||||||||||.||.||.|||.|.||||||||
BPUM_0574___y 370 TCAATGTTTGATACAGCTACTGATACAGTAGTCAACATGTTGGGGTGGGA 419
BSNT_00850 357 ACA--AAATGTTTCCACCTCT---TTTTTTGAAAAATATGAGGAAGTCGA 401
||| |||| |.||||| ||||||.|.||||||...|||.|.||
BPUM_0574___y 420 ACAAGAAAT-----CTCCTCTGAATTTTTTAAGAAATATATAGAAATTGA 464
BSNT_00850 402 AGAAACACTAGCGAA-------TATCATGGCTTCTGTTCGCGGAGAACGG 444
|| |..|||.|..|| ||..|.|| |.||.||.|||| |
BPUM_0574___y 465 AG-ATGACTTGGCAAGTACAGTTACAACGG----TATTTGCTGAGA---G 506
BSNT_00850 445 CTTTCA-GAAACAGAAATGACATACATTAACCGTTATCACTTTGTACGTG 493
.||..| ||||..|||.|||.|||.|||||.||||||||||||||..|.|
BPUM_0574___y 507 ATTGAAGGAAAGTGAACTGAAATATATTAATCGTTATCACTTTGTGAGAG 556
BSNT_00850 494 GATTAAAGCACCAAACGAATGAAGAAAGTGAGATAAAGGATGTTCGCTCT 543
|..|..|.|||.|...|.|||||||||||.|||....||||.|||..||.
BPUM_0574___y 557 GTCTGTATCACGATGTGGATGAAGAAAGTCAGAATGGGGATATTCATTCA 606
BSNT_00850 544 ATTACAAACACGATCATAGACCCCACTGACCCAT--CAG--TNTT----G 585
|||||||||||..|.|||||||| |.|.|| ||| | || |
BPUM_0574___y 607 ATTACAAACACTGTTATAGACCC-----AACAATTCCAGGTTCTTTAAAG 651
BSNT_00850 586 CATTTGCAT-AGTGANCAAGATGAAGGCTATTCAGCTTTTGTCGTGATTG 634
| ||| | ||.|| |||||||||||||||..|.|||||||.||..|||
BPUM_0574___y 652 C--TTG--TCAGCGATCAAGATGAAGGCTATATATCTTTTGTTGTTGTTG 697
BSNT_00850 635 ACGAATTTCTTCACAATAT-GTCGGAA-AGTGATTTGTTTTATGAAGCGC 682
|.||.|.|.||.|.||||| ||| || |||||||||||||.|||||..|
BPUM_0574___y 698 ATGAGTATTTTGATAATATGGTC--AACAGTGATTTGTTTTTTGAAGTTC 745
BSNT_00850 683 AGTCTCTTCCCTTCCCTGTTGAAGTTCAGATGAAAATTCAAACG--GAAT 730
|..|.||.||.||.|||||.||||||.|.||.||| .||||.| |||.
BPUM_0574___y 746 AAGCACTACCTTTTCCTGTAGAAGTTGATATTAAA--GCAAAAGTTGAAG 793
BSNT_00850 731 CAAAGTCCATTACCAAGCCTGCCCTCAACCTCAAAAGACAGCAATTGAAA 780
.|||....||.||.|||.||||..|.||..|||||...||.|||.|.||.
BPUM_0574___y 794 GAAAAGGAATGACAAAGGCTGCTTTGAATATCAAACATCAACAACTAAAG 843
BSNT_00850 781 GAAGAACAAAAAGAGCAACAAAGCACAGGCGATCG-------AAGTGATG 823
|||||.|||||.|| ||||||.||.| ||| |||||||
BPUM_0574___y 844 GAAGAGCAAAATGA-----AAAGCATAGTC--TCGGTGACGAAAGTGAT- 885
BSNT_00850 824 TTTCCACTGTCACAAGTGCCACAATGATAAG-GCAT-------------- 858
|.|||| |||||||.||| ||||
BPUM_0574___y 886 ------CAGTCA--------ACAATGACAAGTGCATTTCTCGTAAAGGAC 921
BSNT_00850 859 TTACAAGATGAAATAAAGAAAGAAGATGTGCATGTGATGAACTGGCTGTC 908
||||||.|..||||.|||||||||||.|||..|.|.||.||||||||..|
BPUM_0574___y 922 TTACAAAACAAAATTAAGAAAGAAGAAGTGTCTTTAATCAACTGGCTTGC 971
BSNT_00850 909 GGTGATAGTCGTTCATGGAAAGACAAAAAAAGAGTG---TGTGGGAAAAG 955
|||..|.||.|||.||||||..|..|||||.||.|| | ||.|||
BPUM_0574___y 972 GGTTGTGGTTGTTGATGGAAGAAGCAAAAAGGAATGCACT----GAGAAG 1017
BSNT_00850 956 CAAC----GATTGTCAAAAGGCATTTAAAAGGCGCTGGCATTACTTGTCG 1001
..|| |.||||| ||.||..|||||||.||.||.||||..||..|
BPUM_0574___y 1018 GCACGTCTGGTTGTC---AGACACCTAAAAGGAGCAGGAATTAAATGCAG 1064
BSNT_00850 1002 GCTTCCGGTGGCTGATCAACTGAACCTTTTTTATAAAATGCTTCCTGGTG 1051
|.||||..|.|||||||||.||...||.|||||||||||||||||||.|.
BPUM_0574___y 1065 GATTCCTATTGCTGATCAATTGTCTCTATTTTATAAAATGCTTCCTGCTC 1114
BSNT_00850 1052 AAAAGTTAGACATAACTGATAAGAACTGGATTCAAAAAACAACGCAAGAC 1101
|||||.|.||..|.|..||.||.|||||||||||||||||.||.|||.|.
BPUM_0574___y 1115 AAAAGCTTGATCTTATGGACAAAAACTGGATTCAAAAAACGACACAAAAT 1164
BSNT_00850 1102 GGTGTGGCTGAAAGTCTGTTT----GCTGTTAACTCTGATATTGGTTCGA 1147
||..|.|||||| ||||| |.||||.|.|||..|.|||||||.|
BPUM_0574___y 1165 GGGCTTGCTGAA----TGTTTACTAGGTGTTGATTCTTTTGTTGGTTCAA 1210
BSNT_00850 1148 AAATCGGGTTCTTTCTCGGTTGGGTTGATCGTTTCCAAGAGCACACCGAC 1197
|.||.||.||||||.|.||.||||..|||.|.||..|..|.||.||.|||
BPUM_0574___y 1211 AGATTGGCTTCTTTTTAGGATGGGGAGATAGATTTGATAAACATACTGAC 1260
BSNT_00850 1198 TTAGAAAGTGCCATTATGTCCAGCCGTGATTTTGT--TTTATTCCACCCT 1245
||||||||.||.|||...||.||.||||||||||| ||||| ||.||.
BPUM_0574___y 1261 TTAGAAAGCGCTATTCGATCAAGTCGTGATTTTGTTCTTTAT--CATCCG 1308
BSNT_00850 1246 TTCTTAGCG--------AATTAG--------------------------- 1260
||||||||| |||||.
BPUM_0574___y 1309 TTCTTAGCGAACCAACAAATTAAAGGCTCTAAAACCCGATCACCACATTG 1358
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1359 TTTAATCACAGGTGATACGGGGAACGGAAAGTCTTTCCTTGCGAAGCTAC 1408
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1409 TTTTTCAATATATTTCGTTTATGGATGTCAAAGCTCTATATATTGATCCT 1458
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1459 AAAAAGGAAATGAGGAAGTGGATCACAAAAATTATTAACAATCCACAGAC 1508
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1509 ACGTAAAGACTTCCCACTATATATCAATCATCTGGAGAAGTACCACTTTA 1558
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1559 TAACGCTGGATCACGAGAAAAAAGAAAACTGGGGTGCATTAGACCCTGTA 1608
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1609 TCATTTATGCCAGCAAGTAAAGCCAAAGATTTAATAGAGGTCATCTTTGA 1658
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1659 ACAAATTTATAACTTTAAAGACAAGGATACTATAAGTACTGCTTTTTTAA 1708
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1709 GGGCGATTTCAAATGTTCTTGAAAGAAAAGAACGTGGTGAGCAAGTTGGA 1758
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1759 TCACTCCACATTATTTATGAAATGCAGCAGCACAAAAATGAGATTGTGAG 1808
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1809 AGAAGCAGGAGACAATCTTTTTGAATCTGTTAAAGACTCAATCATGAAAT 1858
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1859 TACTTATTCATGACGGTTCGAATCCTTCCTTATCATTAACAGAGAGAATG 1908
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1909 ACGATTTTAGAAATTGAGAACATGGACTTGCCGGAATTCGGTGAAAGAAT 1958
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 1959 TGAGAATTTCACGAAGTCACAAATGAAGTCTAGTGCGGTCATGTTTGCAG 2008
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2009 TCGGTAAGTTTTGCGAATTGTTCGGGATGAATGCAGATGAAAAAACAGCT 2058
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2059 GAGTTCATAGACGAAGCATGGATATTTACAGCTAGTCCTCAAGGTCGAAA 2108
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2109 AGTTGAGCGTCAAATGCGAAGAATTGGACGTTCTTATAATAATGCTGAAT 2158
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2159 TCTTTATCTCACAATCAACAAAGGATGCTTTACATGATGATGACAAAGGA 2208
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2209 AACTTTGGTGTCGCATTTGCATTCGATGAACCAAGTGAAAGGGAAGATGT 2258
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2259 TTTGAAATGGATGAATCTTGAGCCAAGTGAAGAAAATCAAAAGATGCTTG 2308
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2309 GGTCAATGTTTCAAGGTCAATGCCTGTTTAAAGATATTTACGGGCGTACC 2358
BSNT_00850 1260 -------------------------------------------------- 1260
BPUM_0574___y 2359 TCTAAAATCTCAATTGAATGCCTGTTTGAAGAGTGGATGGGTGCTTTCGA 2408
BSNT_00850 1260 ------------------------------------------------- 1260
BPUM_0574___y 2409 GACCATCAATAAAAGTGAAGTGGCATATGCTGAAGAGATGTATTTATAA 2457
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