Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01557 and BPUM_0557

See Amino acid alignment / Visit BSNT_01557 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_01557.1.24716.seq
#    -bsequence dna-align/BPUM_0557___yddA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01557-BPUM_0557___yddA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01557-BPUM_0557___yddA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01557
# 2: BPUM_0557___yddA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 337
# Identity:     115/337 (34.1%)
# Similarity:   115/337 (34.1%)
# Gaps:         185/337 (54.9%)
# Score: 309.5
# 
#
#=======================================

BSNT_01557         0 --------------------------------------------------      0
                                                                       
BPUM_0557___y      1 ATGAGCCAATGGAAAGGGTTAGATCATAGACTTTTTAATTTGGGTTTTAT     50

BSNT_01557         1 -------------------------------------------------A      1
                                                                      .
BPUM_0557___y     51 GGTTGGTGTTCCTTCTAAGGTTTATGTAAGACAGATCAGTCGTGAGTGGT    100

BSNT_01557         2 TGTTGATTGTCGAAGGAGAAAGAGTAAAAGGATTTGCTGAATATCGTTAC     51
                     |.||||||||.||.||||||.|..|||||||.|.|.|.|||||.|||||.
BPUM_0557___y    101 TTTTGATTGTGGAGGGAGAACGTATAAAAGGTTATTCAGAATACCGTTAT    150

BSNT_01557        52 ACATTCTACAAGACAAGGTATTTGCCGGACGGTCGGATGACTAG------     95
                     .||||.||||||||.|..|.|.||...||.||..|.|||||.||      
BPUM_0557___y    151 TCATTTTACAAGACGAAATTTATGGATGATGGAAGAATGACCAGTACAAA    200

BSNT_01557        96 -------CT---TAAAAGT------------TTATATGGAGAATCAAAGC    123
                            ||   |||||||            .|||||    |||.||   
BPUM_0557___y    201 GGTATTCCTTGATAAAAGTAGTGTTCGGCAAGTATAT----AATAAA---    243

BSNT_01557       124 ATAAGAAGGGTGTTACATCGTGTAGCATCCTTTTTATCTTTCTTAGAAAG    173
                              ||||||.|||     .||||..||.|       ||.|||| 
BPUM_0557___y    244 ---------GTGTTAAATC-----ACATCAATTAT-------TTGGAAA-    271

BSNT_01557       174 AATGAAACAAATTGAAAAGAAGGAGAGTGGAGCATAA    210
                         ||||   ||.|                      
BPUM_0557___y    272 ----AAAC---TTAA----------------------    279


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