Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00834 and BPUM_0552

See Amino acid alignment / Visit BSNT_00834 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:35
# Commandline: needle
#    -asequence dna-align/BSNT_00834.1.24716.seq
#    -bsequence dna-align/BPUM_0552.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00834-BPUM_0552.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00834-BPUM_0552.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00834
# 2: BPUM_0552
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 310
# Identity:     161/310 (51.9%)
# Similarity:   161/310 (51.9%)
# Gaps:          86/310 (27.7%)
# Score: 409.0
# 
#
#=======================================

BSNT_00834         1 TTGTTACAAAGGTCCAAAATCTCAAACGGGGTGAT--TTTTATAAACATT     48
                                                      ||  |||||.||     
BPUM_0552          1 ---------------------------------ATGGTTTTAGAA-----     12

BSNT_00834        49 GATATAACAAACTCGT-TTATGAAAGAAGCTGTTCCTTTAGCCAGACAAA     97
                     ||||..|.|||    | |.||||||.|.|||||..|.|||||.|.|||..
BPUM_0552         13 GATACCAAAAA----TGTGATGAAAAAGGCTGTATCATTAGCAAAACAGC     58

BSNT_00834        98 TGGAAGGTGATTGGATAGCACGAATGAAAATTGCTCTGAATTCAGTCATC    147
                     |.||.|||.||||||.|||..|||||||.||.||.||.|||..|||...|
BPUM_0552         59 TTGAGGGTAATTGGACAGCGAGAATGAAGATGGCACTTAATAAAGTGTAC    108

BSNT_00834       148 ATAAATCATTATTTAAACCTTCCCTTAACAATTGA----AAATGTTAATG    193
                     |||.|.|||||||||     ||.|  |.|.|||||    |.|.||.|.||
BPUM_0552        109 ATAGAGCATTATTTA-----TCAC--AGCCATTGACGCGAGAAGTAATTG    151

BSNT_00834       194 AA---TTACTGCGAAAAGGTGTTTCATATCGCAGGAT-ATGTAAGCATTA    239
                     ||   ||.||.|.||||||..|.||||.|||..|.|| |.| ||.|||||
BPUM_0552        152 AAAGGTTGCTACTAAAAGGGATGTCATTTCGACGAATCAAG-AAACATTA    200

BSNT_00834       240 TGGCATTGGAAGAAAAGACATTGAAAAGCTGC------GGC--AATCATC    281
                     |....|.||||...||||.|||     .||.|      .||  |||.|  
BPUM_0552        201 TAATGTCGGAATGCAAGAAATT-----TCTTCTCTTCTCGCTAAATGA--    243

BSNT_00834       282 CATAGTGTGA    291
                               
BPUM_0552        243 ----------    243


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