Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05082 and BPUM_0550
See
Amino acid alignment /
Visit
BSNT_05082 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_05082.1.24716.seq
# -bsequence dna-align/BPUM_0550.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05082-BPUM_0550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05082-BPUM_0550.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05082
# 2: BPUM_0550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 238/468 (50.9%)
# Similarity: 238/468 (50.9%)
# Gaps: 150/468 (32.1%)
# Score: 501.0
#
#
#=======================================
BSNT_05082 1 ATGGA-AAGTAAGAAAATTGGACATGCCGTTAAACGT-------CTGAGA 42
.|||| ||.|.|| |.||||| |||..| ||.|||
BPUM_0550 1 GTGGATAACTTAG----TCGGACA-------AAAAATAAAGAAACTAAGA 39
BSNT_05082 43 ACCGAAAAGAAAAAG---AC---------TGTGGATGAGGCAGCTAAGGA 80
| ||.|.|||||| || |||.|..|| |
BPUM_0550 40 A---AACAAAAAAAGTATACTCAAAAATATGTTGCCGA-----------A 75
BSNT_05082 81 AA--TCGGAATTTCTCAGAGTTATTTATCAAGAATAGAAA----ACAA-T 123
|| |.||.|||.|..|.|||||||||||.|.|.|.|||| |||| .
BPUM_0550 76 AATTTAGGTATTACAGACAGTTATTTATCTAAACTTGAAAAAGGACAACC 125
BSNT_05082 124 AC--TCAAGTGCCTTCGTTGAAGGTTATTGAGAAAATTGCTGATTACTTT 171
|| ||||.|.|.||..|..|| |||||.|||||.|..|||
BPUM_0550 126 ACCTTCAATTACATTACTCAAA----------AAAATGGCTGACTTTTTT 165
BSNT_05082 172 AATGTTCATAAATCATATTTATTTTT---TGATGAAGAAAGCTTGGATAG 218
.||||..||.||||.|||||.|||.| .|||||.||| ||..|.|.
BPUM_0550 166 GATGTAGATCAATCTTATTTCTTTATCAAGGATGATGAA---TTAAAAAA 212
BSNT_05082 219 CTTTACTGACCCGGA--GAAAAA-----GTTACTCGCACAAAAAAGCATT 261
.||.|.||| || |||||| |.||.||| ||||||..||
BPUM_0550 213 TTTCAATGA----GACCGAAAAAGAACTGATATTCG----AAAAAGATTT 254
BSNT_05082 262 A-CAGTCGACGATCTAAAA---AAACTCAATATAGTGCACGAGAACGGTA 307
| ||.|.||..|..||||| |||.|||||||..| ||..|||
BPUM_0550 255 ATCATTAGAAAACATAAAAAACAAATTCAATATCTT-------AAAAGTA 297
BSNT_05082 308 G-----CA--AAATAACAGAAGAAGAGTTACAAATAGTGATTCAACACTT 350
| || ||||..|.||.||.|| || ||.|||.|.|
BPUM_0550 298 GATGATCAAGAAATTTCTGATGATGA---AC---------TTAAACTCAT 335
BSNT_05082 351 G---AAAGAGTTAAGGAAATTAAAG-------------GAAAGTTATATG 384
| .|||..||| |||| ||||
BPUM_0550 336 GCTCGAAGTCTTA--------AAAGCCTATCGGGTTTCGAAA-------- 369
BSNT_05082 385 AACGATAAGGA--CTAA- 399
||.||||..|| ||.|
BPUM_0550 370 AATGATATTGATTCTTAG 387
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.