Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01088 and BPUM_0546
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_01088.1.24716.seq
# -bsequence dna-align/BPUM_0546___yeaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01088-BPUM_0546___yeaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01088-BPUM_0546___yeaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01088
# 2: BPUM_0546___yeaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity: 736/1428 (51.5%)
# Similarity: 736/1428 (51.5%)
# Gaps: 468/1428 (32.8%)
# Score: 1685.5
#
#
#=======================================
BSNT_01088 1 ATGAATAAGAAAT---GGCAATGGCTCGT------------ATATGGTT- 34
|.||||| |.|| |||| .|||||||
BPUM_0546___y 1 ------ATGAAATTAGGTCA-----TCGTTTCGCTTTTTCATTATGGTTA 39
BSNT_01088 35 -------GGAAGCTGATTATATTAACTTTATTGACGGCTGCTGTTTTTTC 77
.||.|||.|||||..|.||| ||.||.|||||||.
BPUM_0546___y 40 CGGGTGATGATGCTCATTATTCTCACT---------GCGGCAGTTTTTTG 80
BSNT_01088 78 TTATGCGATGTTTCAGGGCGGCTTTGTCAGCTGGTTTTTGTTTTACACGT 127
||||||.|||||||||||.||.|||||.||.|||||..|.|||||..|.|
BPUM_0546___y 81 TTATGCCATGTTTCAGGGAGGGTTTGTGAGTTGGTTCCTTTTTTATGCAT 130
BSNT_01088 128 TTCTCCCTTTTGTCTTGTATGCCGGGCTGTTGGCCTTATATCCGCTCCGT 177
||.|.||.|.||..||||||||...|||||| |.|||| |||
BPUM_0546___y 131 TTTTACCATATGCGTTGTATGCTTTGCTGTT---------TGCGCT-CGT 170
BSNT_01088 178 TCTTTTCAGGCTTCAAGGCAAATGGA---TAAAACACAA-----TTGCAT 219
.|...|.||..|...||..|||.||| ||.|||| || |||.|.
BPUM_0546___y 171 GCCGCTGAGAGTGACAGCGAAAAGGACTTTACAACA-AACCCGCTTGAAG 219
BSNT_01088 220 GCGGGGGACAGGCTGGGCGTAACGGTTACGCTGAGAAGAAAGCTG----- 264
|||||.|||..||||..||| |.||..||| ||..||||.|
BPUM_0546___y 220 GCGGGAGACGTGCTGTCCGT-----TGACCTTGA-AATCAAGCGGACAAA 263
BSNT_01088 265 -CCATTTCCCCTGAT--GTATA--TGGTGATTGAAGATTG--CCTGCCAG 307
|||||||| || ||.|| |..|||||||.|| || ||| ||||
BPUM_0546___y 264 TCCATTTCC----ATACGTTTACGTCTTGATTGAGGA-TGATCCT-CCAG 307
BSNT_01088 308 A-AGGTATCGAGTCATT---------AAATCGAGACGGAGCCGCGGCCAA 347
| | |...||||| ||||.||.|.|.|| |||
BPUM_0546___y 308 ACA-----CCTTTCATTTAAAGGAACAAATTGAAATGAAG-------CAA 345
BSNT_01088 348 ACGGCTCGTTTTTCCTTGGTTT----AAACGGAGCATGACG-ATGTCGTA 392
| |..|.|||||||||||| ||||| ||.|| .|.||.||
BPUM_0546___y 346 A----TGCTGTTTCCTTGGTTTCGGAAAACG-----TGGCGTTTTTCCTA 386
BSNT_01088 393 TGAATTAGCTCGGGTACCGCGCGGAGAGCATCACTTTCATTCTGTCAG-G 441
|.||||...|...||...||||||.||.||||| |.|||||| |
BPUM_0546___y 387 TCAATTGAATGATGTCATGCGCGGGGAACATCA-------TTTGTCAGCG 429
BSNT_01088 442 GTGCG------AACCGGGGATGTTCTTGGCTT----GATTGAAAAAACTA 481
||.|| |||.||||||.|..||||.|| || ||||.||.|
BPUM_0546___y 430 GTTCGAATCAAAACGGGGGATATGTTTGGTTTTGTGGA--GAAAGAAGT- 476
BSNT_01088 482 CATTTTTTGAGCTGGATGATACC-------------CTGTTTGTTTATCC 518
.||.||.|| |||.||||||||||
BPUM_0546___y 477 --------------CATCATCCCGTTAGAAAAAAAGCTGCTTGTTTATCC 512
BSNT_01088 519 ----AT------TCTATCAGCGTT---TTTCCT--ATCAGGTGAATGA-- 551
|| ||| |||| ||| |.|.|| .||| ||||||||
BPUM_0546___y 513 GAAAATGCTCGATCT-TCAG-GTTGAGTCTGCTGAGTCA-GTGAATGAAA 559
BSNT_01088 552 ---GAGGCATCAGGAAGACGGTGTAAGCGGTTCTTCTCCT-----ATTCA 593
|||||| ||||||||| .|||.| |.|.|
BPUM_0546___y 560 ATGGAGGCA---------------AAGCGGTTC-ACTCTTGGTTAAATGA 593
BSNT_01088 594 TCAGCACCATTCCTCAGTCGCAGCAAGTGTGCGGAATTATCAGCCGGGAG 643
.|.|..|||| ||..||.||.||||..||.|.||.||||..||||
BPUM_0546___y 594 ACCGACCCAT------GTGACAACAGGTGTAAGGGAATACCAGCAAGGAG 637
BSNT_01088 644 ACCGGTTTG-CTGCGTTAGATTGGAAGACTTCTGCACGGCGGAGCCAGCT 692
||||.|||| ||| |.|.||.||||||||..|.||..|..|..|||||||
BPUM_0546___y 638 ACCGTTTTGCCTG-GGTGGACTGGAAGACGACAGCTAGAAGAGGCCAGCT 686
BSNT_01088 693 GATGACGAAGGAATTTGAGCCTTCTCGCAGCAAA-----AATCT----GT 733
||||||||||||||||||.| .|.|.|||| .|||| ||
BPUM_0546___y 687 GATGACGAAGGAATTTGAAC-----AGAATCAAACAAAGGATCTTGTCGT 731
BSNT_01088 734 TTCTGCTGATGGACCGTTTTTCCTCTGA---CGCATTCGAAGA-GGTCGT 779
||.|||||| ||||.|...||| .|||||.| ||| .|||||
BPUM_0546___y 732 TTTTGCTGA-------TTTTACAGATGAAGCGGCATTTG-AGACCGTCGT 773
BSNT_01088 780 TTCAGTGACAGCTTCGATTCTTTATTCTGTTTTAAAAAACGGCG---CGG 826
|||..|.||||||||..||||..|.||.|...|.|||||.||.| ||
BPUM_0546___y 774 TTCTATTACAGCTTCAGTTCTCCAATCGGCAGTGAAAAAAGGAGTTCCG- 822
BSNT_01088 827 GCGCTGGCCTGGCTTCC---------ATCGGGAAGGAAAAAAACAT---T 864
||.|||||.| ||| ||| ||||| |
BPUM_0546___y 823 --GCAGGCCTTG--TCCCACTTGGTGATC------------AACATGTCT 856
BSNT_01088 865 TTCCCTATTCAGGAAGGGGATCA---------GCATTTTAAGCACATGCT 905
||| .||.|||||| .|||||..||.||.||||
BPUM_0546___y 857 TTC----------GAGTGGATCAAGGAGAGTCTCATTTGCAGGACTTGCT 896
BSNT_01088 906 TCGGCATTTAGCCATCGCTCATTGTGATGCGGCAGACCCGATAAGCCGAT 955
|.....||||.|.| ||.|||.||| |.|| |..|
BPUM_0546___y 897 TTATTTTTTAACAA----------TGGTGCAGCA----CCAT----CCTT 928
BSNT_01088 956 AT---GCACGGGAAGAGCTGGGAAAGCCATCTGTTCG------------- 989
.| ||||..||| .|.||||| .||||
BPUM_0546___y 929 CTCGCGCACTTGAA-----TGTAAAGC-----TTTCGCAGCGAGTGAGTA 968
BSNT_01088 990 CCAA---GCTGATCAAGTTGTTGTCACGGGACAGTTAACGGAAGA--TAT 1034
|||| ||||...||..|||.||.|||||.||..||...||||| | |
BPUM_0546___y 969 CCAATACGCTGGAAAATATGTCGTTACGGGTCATCTACATGAAGAGCT-T 1017
BSNT_01088 1035 GCTGCA---CC----------TCG---CAGAAA----------------- 1051
|||| | || ||| ||||||
BPUM_0546___y 1018 GCTG-AGAGCCTTTTTGTAAATCGAAACAGAAAGAACATCACTGTTCTTT 1066
BSNT_01088 1052 TAG-GAGGCG-GCCGGGTTACGG--TGATAC-TGGCAAAAGAGAAAGATG 1096
||| ||.|.| |||| ||| .||||| .|.|||||||.|||.| |
BPUM_0546___y 1067 TAGTGAAGAGAGCCG-----CGGATCGATACACGACAAAAGAAAAACA-G 1110
BSNT_01088 1097 CT----GAGCTCTCTCAAGCTGAA---------AATGC-CATGA------ 1126
|| || |..|||||| ||||| ||.||
BPUM_0546___y 1111 CTTGTAGA-------CCGGCTGAAGGCATCGGGAATGCGCACGACCGTTT 1153
BSNT_01088 1127 ---TTGAA---CGCATG-ATGAAACGCCAAATCAGAGTTCGGGTCATGAG 1169
||||| ||..|| |.|||| .||.|..|| |||.|
BPUM_0546___y 1154 TATTTGAAGACCGGCTGCACGAAA---GAACTGTGA-----GGTGA---- 1191
BSNT_01088 1170 GGGCGGGCGAGTTTCGCGTGTTGTTTAG 1197
BPUM_0546___y 1191 ---------------------------- 1191
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