Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01045 and BPUM_0533
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_01045___ydiL.1.24716.seq
# -bsequence dna-align/BPUM_0533___ydiL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01045___ydiL-BPUM_0533___ydiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01045___ydiL-BPUM_0533___ydiL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01045___ydiL
# 2: BPUM_0533___ydiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity: 508/805 (63.1%)
# Similarity: 508/805 (63.1%)
# Gaps: 140/805 (17.4%)
# Score: 1538.0
#
#
#=======================================
BSNT_01045___ 1 TTGAGAAAACAGTATTGGTTTATTATTTTGACATATATCATCATGCAGTT 50
||||.||||||.|||||||..||.||.||.||.|||||..|..|||||.|
BPUM_0533___y 1 TTGAAAAAACAATATTGGTACATCATCTTAACGTATATATTGGTGCAGCT 50
BSNT_01045___ 51 TTCCGCATTAATCGCGATTCCCT---TGTT-AT--TTAAATTCGGTTATG 94
||| .||||||||.| |||| || |.|||| |||||.|
BPUM_0533___y 51 TTC---------TGCGATTCCTTATGTGTTCATCATGAAAT--GGTTAGG 89
BSNT_01045___ 95 C------------CGGAGGACAGCCTA-CAGA------TGAAAATATGT- 124
| |.||.|||| |.| |||| | |||.|||
BPUM_0533___y 90 CTACATTCAGACACCGATGACA--CAAGCAGAGCTCTCT---AATTTGTC 134
BSNT_01045___ 125 ---TGCATGCACAAGGATTATGGTCCGTTATCAGCTTTATCGCCTGTCTC 171
|.||||.||||..|||| |.|.|..|.||.|.||.|||
BPUM_0533___y 135 AGGTACATGGACAATCATTA-GTTTCTGTGTCGGATTAATC--------- 174
BSNT_01045___ 172 GTTGTTGTTCTGCTCATTCTGAGAACCGTTCCGAAAGAAACGCTGCGAAA 221
.||.|||||||||||||..|.||.||.||.||||...|.||.|||||
BPUM_0533___y 175 ---ATTATTCTGCTCATTCTTCGGACTGTGCCAAAAGCTTCACTTCGAAA 221
BSNT_01045___ 222 CGGACAGAAGGAC-----TCAATCGGACTTTCTATCCTTTGGGCGATAGC 266
.||||.|| |||.||||.....|.|||.|||||...||.|.
BPUM_0533___y 222 -----TGAAGCACCGGCTTCAGTCGGCGCGGCAATCGTTTGGATCATTGT 266
BSNT_01045___ 267 CGGTTT-TTTCATTGCCCTTTTCTCTCAAGGAATAGCAGGCTCTATTGAA 315
|||||| |||| ||.||||.||..|.|||..|||.||.||..|.||||||
BPUM_0533___y 267 CGGTTTCTTTC-TTTCCCTCTTTGCACAATCAATTGCGGGGGCGATTGAA 315
BSNT_01045___ 316 TATTATGTTTTTGGCATCGGAAGAGAATCAGAAAATACACA--------- 356
.|.||||..||||||||.||..|||||||.||||||||.||
BPUM_0533___y 316 CAATATGCATTTGGCATTGGCCGAGAATCTGAAAATACTCAAAACATCTT 365
BSNT_01045___ 357 AGCGATTCTGGATGTCATTCAGGCAGTCCC---GCTCATGATTATCGTTT 403
|.|.|||.||||| |||||.|| |||..|| |||||
BPUM_0533___y 366 ATCCATTATGGAT---------GCAGTTCCATGGCTTGTG---ATCGT-- 401
BSNT_01045___ 404 CTTCCATCG------TCGGGCCTATATTAGAAGAAATCATCTTCAGAAAA 447
||||| |.||.||.||||||||.||||||||.||..|||||
BPUM_0533___y 402 ----CATCGCCCTGATTGGACCGATATTAGAGGAAATCATTTTTCGAAAA 447
BSNT_01045___ 448 ATCATTTTCGGCGCGCTGTACGAAAAAACGAATTTCTTTTTCGCAGGACT 497
|||||.||.||.|.|.|.||.||||||||||||||.||..|.|.||.|||
BPUM_0533___y 448 ATCATCTTTGGTGTGGTTTATGAAAAAACGAATTTTTTCATTGGAGCACT 497
BSNT_01045___ 498 GATCAGCTCGGTTATCTTCGGTATTGTTCACGCTGATTTGAAGCATCTCC 547
..||||.||.||..|.||||.|..|||.|||..||||||....|||.||.
BPUM_0533___y 498 TGTCAGTTCAGTGGTTTTCGCTGCTGTACACAATGATTTCCCACATATCT 547
BSNT_01045___ 548 TTCTATATACAGCAATGGGCTTTACCTTTGCCTTTTTATATGCGAGAACA 597
|.||.|||||.||||||||||||||||||||||||||||||||||.||||
BPUM_0533___y 548 TGCTCTATACCGCAATGGGCTTTACCTTTGCCTTTTTATATGCGAAAACA 597
BSNT_01045___ 598 AAACGGAT----------ATGGGTGCCGATTTTCGCCCATTTAATGATGA 637
|||||.|| ||.|||||..||.|.| ||||||
BPUM_0533___y 598 AAACGAATCATTGTTCCAATCGGTGCTCATATGC-------TAATGA--- 637
BSNT_01045___ 638 ATACATTCG-TCGTCA---TCATGCAGCTTGAGCCTGTTCG--TAATTAC 681
|.||| ||||.| |..|||||.|||||||.||..| .|||.|
BPUM_0533___y 638 ----ACTCGCTCGTTATTCTTGTGCAGATTGAGCCAGTAAGAAAAATGA- 682
BSNT_01045___ 682 CTTGAACAGCAGAGCACACA-AATGCAATTGATTATTGGAGGATTATTTT 730
|||||.|.|| |.|.||.| |||||||.|||||||||||||.||.||.|
BPUM_0533___y 683 -TTGAAGAACA-ATCTCAAACAATGCAAATGATTATTGGAGGCTTTTTCT 730
BSNT_01045___ 731 TATGA 735
.||||
BPUM_0533___y 731 CATGA 735
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