Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01043 and BPUM_0530

See Amino acid alignment / Visit BSNT_01043 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:41
# Commandline: needle
#    -asequence dna-align/BSNT_01043___tatCY.1.24716.seq
#    -bsequence dna-align/BPUM_0530___tatCY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01043___tatCY-BPUM_0530___tatCY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01043___tatCY-BPUM_0530___tatCY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01043___tatCY
# 2: BPUM_0530___tatCY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     541/787 (68.7%)
# Similarity:   541/787 (68.7%)
# Gaps:          53/787 ( 6.7%)
# Score: 1749.5
# 
#
#=======================================

BSNT_01043___      1 ---------ATGAAAGTGAATCAAATGTCGCTGCTGGAGCATATTGCTGA     41
                              |||||.||.||..|.|||.||||..||||||||||||..||
BPUM_0530___t      1 ATGAGCTTCATGAATGTCAAAGATATGCCGCTTATGGAGCATATTGTGGA     50

BSNT_01043___     42 GCTTCGAAAACGGTTGCTGATTGTAGCGCTGGCGTTTGTCGTTTTCTTTA     91
                     .||.||||||||.||..||.|..|.|||.|   |||..|.|||..|||||
BPUM_0530___t     51 ACTGCGAAAACGTTTAGTGGTCATTGCGAT---GTTCTTTGTTGCCTTTA     97

BSNT_01043___     92 ---TTGCTGGATTTTTTTTAGCAAAGCCGATTATTGTGTATCTGCAAGAA    138
                        |.||.||.||||||.|.||.||||||.|.|||||||||.|.|||.|.
BPUM_0530___t     98 TGGTGGCAGGTTTTTTTCTCGCTAAGCCGGTCATTGTGTATTTACAAAAT    147

BSNT_01043___    139 ACAGATGAAGCGAAGCA--GCTTACGCTTAACGCGTTTAACCTGACAGAC    186
                     ||.|||||||||  |||  .||.|||||.|||||||||||.||.|||||.
BPUM_0530___t    148 ACGGATGAAGCG--GCAACACTGACGCTGAACGCGTTTAAGCTCACAGAT    195

BSNT_01043___    187 CCGCTTTATGTGTTTATGCAGTTTGCGTTTATCATCGGCATAGTCCTGAC    236
                     ||.||.||.||||||||||||||.||.|||.||||.|...|.||..||||
BPUM_0530___t    196 CCTCTGTACGTGTTTATGCAGTTCGCATTTGTCATTGCTTTGGTTTTGAC    245

BSNT_01043___    237 CTCGCCAGTTATTCTTTATCAGCTTTGGGCTTTTGTGAGCCCGGGTCTCT    286
                     .|..||.||.|||.|.||||||||.|||||.|||||||||||.||..|.|
BPUM_0530___t    246 GTGTCCCGTGATTTTGTATCAGCTATGGGCGTTTGTGAGCCCTGGCTTAT    295

BSNT_01043___    287 ATGAGAAAGAGCGCAAAGTAACGCTCAGC-TACATTCCGAT--CTCTATT    333
                     ||||.|||||..|.||.||.||.|| .|| ||.||||||||  |.||..|
BPUM_0530___t    296 ATGATAAAGAAAGAAAGGTGACACT-TGCTTATATTCCGATTGCACTGCT    344

BSNT_01043___    334 TTGCTGTTTTT-AGCGGGCTTAT--CTTTTTCATATTATATTTTATTTCC    380
                     ||  |.||||| |||||   |.|  ||||.||.||||.||||||.|||||
BPUM_0530___t    345 TT--TATTTTTAAGCGG---TGTGGCTTTCTCTTATTTTATTTTGTTTCC    389

BSNT_01043___    381 TTTTGTTGTTGATTTTATGAAGCGGATCTCTCAGGACTTGAATGTCAATC    430
                     .|||||.|||||||||||||..|||||.||..|.||.||.|||||..|.|
BPUM_0530___t    390 GTTTGTCGTTGATTTTATGATACGGATGTCGAATGATTTAAATGTAGAGC    439

BSNT_01043___    431 AGGTGATCGGAATTAATGAATATTTT-CATTTTCTTCTGCAGCTGACGAT    479
                     |.||.||.||.|||.||||.|||||| || |||||..|||||.|.||..|
BPUM_0530___t    440 AAGTCATTGGGATTCATGAGTATTTTACA-TTTCTGATGCAGTTAACACT    488

BSNT_01043___    480 TCCGTTTGGACTGCTGTTCCAAATGCCGGTCATCCTTATGTTTTTGACCA    529
                     |||.|||||..|..||||.||.|||||.||..|..|.||||||.|.||.|
BPUM_0530___t    489 TCCATTTGGCTTTTTGTTTCAGATGCCCGTTGTGTTGATGTTTCTCACAA    538

BSNT_01043___    530 GGCTCGGAATTGTGACACCGATGTTCTTGGCGAAAATCAGAAAGTATGCG    579
                     |.||.||.||..|.|||||||||||.||..|.|||||..|.||||||||.
BPUM_0530___t    539 GACTTGGCATCATCACACCGATGTTTTTATCAAAAATACGGAAGTATGCC    588

BSNT_01043___    580 TATTTTACGCTGCTGGTGATCGCAGCCCTGATTACACCGCCTGAGCTTCT    629
                     ||||||...||.||.||.||.||.||.||||||||||||||.|||.|..|
BPUM_0530___t    589 TATTTTGTCCTCCTTGTCATTGCCGCACTGATTACACCGCCAGAGATCGT    638

BSNT_01043___    630 GTCCCATATGATGGTCACAGTCCCGCTTTTGATTTTATATGAAATCAGTA    679
                     .|||||..|.|||||.||..|.|||.|..|..|.||.||.|||.|.||||
BPUM_0530___t    639 TTCCCACCTCATGGTTACTTTGCCGATGCTCGTATTGTACGAAGTGAGTA    688

BSNT_01043___    680 TTCTGATATCGAAGGCCGCCTATCGGAAAGCGCAGAAAAGCAGTG-CAGC    728
                     ||.|.||.||||..|...|||||||.|||..||||.||| |||.| |||.
BPUM_0530___t    689 TTGTCATTTCGAGAGTGACCTATCGCAAAATGCAGCAAA-CAGAGACAGG    737

BSNT_01043___    729 CG---------ATCAGGACGTGTCTTCTGTGCAATAA    756
                     .|         ||.|.||.||.||         ||||
BPUM_0530___t    738 GGAGAAAGAAAATGATGATGTCTC---------ATAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01043 and BPUM_0530

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
