Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01037 and BPUM_0526
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_01037___ydiF.1.24716.seq
# -bsequence dna-align/BPUM_0526___ydiF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01037___ydiF-BPUM_0526___ydiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01037___ydiF-BPUM_0526___ydiF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01037___ydiF
# 2: BPUM_0526___ydiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity: 1392/2010 (69.3%)
# Similarity: 1392/2010 (69.3%)
# Gaps: 168/2010 ( 8.4%)
# Score: 4525.0
#
#
#=======================================
BSNT_01037___ 1 ATGATGATCTTACAAATTAATCAGCTGTCCAAATCGTTTGGTGCTGATAC 50
||||||||..|||||.|.||||||||||||||||||||||||||||||||
BPUM_0526___y 1 ATGATGATTCTACAAGTGAATCAGCTGTCCAAATCGTTTGGTGCTGATAC 50
BSNT_01037___ 51 TATTTTAAACAATATAAAGCTGGAAGTCAGAAATC--GTGATCGCATCGC 98
..||||||..||||||||..||||||| ||||.| |.|||||.||.||
BPUM_0526___y 51 CGTTTTAACGAATATAAAATTGGAAGT--GAAAGCAAGGGATCGGATTGC 98
BSNT_01037___ 99 CATTGTAGGAAGAAATGGCGCCGGAAAATCCACGCTCCTTAAAATTATCG 148
|||||||||..|.||.|||||.||.||||||||.||..|.|||||.||.|
BPUM_0526___y 99 CATTGTAGGTCGTAACGGCGCAGGCAAATCCACCCTTTTGAAAATCATTG 148
BSNT_01037___ 149 CAGGCCAGCTTTCGTATGAGAAGGGCGAAATTATTAAACCGAAAGA--TA 196
|.||.||..|.||.||.|||.|.||.||.||.||.||||||||||| ||
BPUM_0526___y 149 CCGGTCAATTGTCTTACGAGCAAGGTGAGATCATCAAACCGAAAGACCTA 198
BSNT_01037___ 197 TTACAATGGGATATCTCGCCCAGCATACTGGCTTGGATTCTAAGCTTACC 246
| |.||.||.|||.|.||.||||||||.|...||...||||..|.|||.
BPUM_0526___y 199 T--CGATCGGCTATTTAGCACAGCATACCGATGTGACGTCTACACGTACG 246
BSNT_01037___ 247 ATAAAAGAAGAGCTGCTGACTGTTTTTGACCACTTAAAAGCAATGGAAAA 296
.|||||||.||..|..|..|.||||||||.||.||||||..|||||||.|
BPUM_0526___y 247 TTAAAAGACGAATTATTATCGGTTTTTGATCATTTAAAAAAAATGGAACA 296
BSNT_01037___ 297 GGAAATGCGGGCTATGGAAGAAAAAATGG------CGGCAGCTGCCCCG- 339
.||.|||.|..|.||.||.||.||||||| |..|||.|| |||
BPUM_0526___y 297 AGAGATGAGAACCATCGAGGAGAAAATGGCTTCTTCCACAGGTG--CCGA 344
BSNT_01037___ 340 GGTGAATTAGAAAGCATCATGAAAACCTACGACCGCCTTCAGCAGGAATT 389
|.||.||| .|.|.|||||||||||||||.|.||.|||||||||||
BPUM_0526___y 345 GCTGGATT-----CCCTTATGAAAACCTACGACAGACTACAGCAGGAATT 389
BSNT_01037___ 390 CAAAGATAAAGGCGGCTATCAATATGAAGCGGATGTTAGATCTGTGCTGC 439
.||||||.||||||||||||||||.|||||.||.||..|.||..|.||.|
BPUM_0526___y 390 TAAAGATCAAGGCGGCTATCAATACGAAGCAGACGTCCGCTCCATTCTTC 439
BSNT_01037___ 440 ATGGTCTCGGCTTCAGCCATTTTGACGATTCTACACAGGTTCAAAGCCTC 489
||||.||||||||.||.||.|||||..||...|||...||||||..|.|.
BPUM_0526___y 440 ATGGACTCGGCTTTAGTCACTTTGAAAATGAGACAACCGTTCAATCCTTA 489
BSNT_01037___ 490 AGCGGAGGCCAGAAAACAAGACTGGCTTTAGGTAAGCTTCTGTTAA---- 535
||.||.||.||||||||..|.||.||..|.||.|||||..|.||||
BPUM_0526___y 490 AGTGGTGGTCAGAAAACCCGTCTAGCGCTTGGAAAGCTCTTATTAATGAA 539
BSNT_01037___ 536 --CACAGC-CTGATTTGCTCATTCTCGATGAGCCGACAAACCATCTGGAT 582
||||.| || |.|||||.||.||||||||.||||||.|.|||
BPUM_0526___y 540 ACCACAACTCT-------TAATTCTGGACGAGCCGACCAACCATTTAGAT 582
BSNT_01037___ 583 ATTGATACGCTTA-CCTGGCTTGAGCATTTTTTGCAAGGCTATTCAGGCG 631
|||||||| |||| |.|||||.|||||.|.|||||||...|||.||||||
BPUM_0526___y 583 ATTGATAC-CTTATCATGGCTGGAGCAGTATTTGCAAAATTATACAGGCG 631
BSNT_01037___ 632 CCATCCTCATCGTATCGCATGACCGCTACTTTTTGGACAAAGTAGTAAAC 681
|.||.||.|||||.||.|||||.||.|||||.||.||||||||.||.|||
BPUM_0526___y 632 CTATTCTGATCGTGTCCCATGATCGATACTTCTTAGACAAAGTGGTGAAC 681
BSNT_01037___ 682 CAGGTATACGAGGTATCAAGAGCAGAAAGCAAAAAGTAT-CACGGCAACT 730
||.|||||.||.||.||||||.|.|..|..|||||||.| || |||||||
BPUM_0526___y 682 CATGTATATGAAGTTTCAAGAACGGCTATGAAAAAGTTTGCA-GGCAACT 730
BSNT_01037___ 731 ACAGCGCTTATCTCGATCAAAAAGCCGCGCA--------GTATGAAAAAG 772
|.||....|||||.||||..|||||.|.||| || |
BPUM_0526___y 731 ATAGTAAGTATCTTGATCTGAAAGCTGAGCAACTAGAGCGT--------G 772
BSNT_01037___ 773 ATCTGAAAATGTATGAAAAGCAGCAGGACGAAATTGCAAAGCTGCAGGAC 822
||.||||..|.||.|||||||||||.||.|||||..|||||||.||.||.
BPUM_0526___y 773 ATATGAAGCTTTACGAAAAGCAGCAAGAAGAAATCTCAAAGCTTCAAGAT 822
BSNT_01037___ 823 TTCGTAGACCGAAATCTGGCGAGAGCCTCTACCACCAAAAGGGCGCAAAG 872
||||||||.||.|||||.||.||||||||.||||| ||||.||||..||
BPUM_0526___y 823 TTCGTAGATCGCAATCTAGCAAGAGCCTCGACCAC--AAAGCGCGCCCAG 870
BSNT_01037___ 873 CCGCAGA---AAGCAGCTGGAGCGAATGGAAGTCATGTCA---AAACCGC 916
.||||| ||.||||||||.||.||||| ||.| |.| ||.||..
BPUM_0526___y 871 -AGCAGACGCAAACAGCTGGAACGGATGGA--TCGT-TTAGATAAGCCAT 916
BSNT_01037___ 917 TTGGCGATGAAAAATCCGCAAACTTTCATTTTGATATTACAAAACAGAGC 966
|.||.|||||||||||||||||||||||||||||||||||.|.|||.|||
BPUM_0526___y 917 TAGGTGATGAAAAATCCGCAAACTTTCATTTTGATATTACGAGACAAAGC 966
BSNT_01037___ 967 GGAAATGAAGTCCTTCGTGTTCATGATCTC-ACAATCAGCTATG----AA 1011
||.|||||.||.||....||.||||||||| |||.|| |.|||| ||
BPUM_0526___y 967 GGCAATGACGTGCTGAAGGTACATGATCTCGACATTC-GTTATGATGAAA 1015
BSNT_01037___ 1012 AACCAGCCGCCGCTTTTAACAGAAGTGTCATTCAT----GCTCACAAGAG 1057
||..| ||||||.||.| .|.||.||||| |.|||.|.|.|
BPUM_0526___y 1016 AAATA----CCGCTTCTATC----CTCTCTTTCATTTCAGATCAAACGCG 1057
BSNT_01037___ 1058 GAGAAAGCGCAGCGCTTGTCGGCCCTAACGGAATTGGTAAATCGACATTG 1107
..||.||||..||.||..|.||.|||||.||.||.||.|||||.||..|.
BPUM_0526___y 1058 AGGATAGCGTGGCACTCATTGGTCCTAATGGGATCGGGAAATCAACCCTT 1107
BSNT_01037___ 1108 CTGAAAACATTAATAGACACCCTAAAACCAGATCAAGGAACG--ATCTCA 1155
.|.|||||.||||...||||..||||.||.|...|||| || |||.|.
BPUM_0526___y 1108 TTAAAAACGTTAACGAACACATTAAAGCCTGCAAAAGG--CGACATCACC 1155
BSNT_01037___ 1156 TACGGCTCAAATGTCAGTGTCGGCTATTATGATCAGGAACAGGCAGAGCT 1205
|..||.||..||||||...|.|||||.|||||.||.|||||.||..|.||
BPUM_0526___y 1156 TTTGGATCTCATGTCACCATTGGCTACTATGACCAAGAACAAGCCAAACT 1205
BSNT_01037___ 1206 GACTTCCTCTAAACGTGTCCTTGATGAGCTGTGGGACGAGTACCCCGGGC 1255
|||.|||||.|||...||.||..|||||||.|||||.||.||.| |
BPUM_0526___y 1206 GACATCCTCCAAAAAAGTGCTCAATGAGCTTTGGGATGACTATC-----C 1250
BSNT_01037___ 1256 TCCCA-----GAAAAAGAAATCAGAACGTGTCTCGGAAATTTCTTATTCT 1300
||.|| ||||||||.||..|.||.|||.|.||.||.|||.|.||.|
BPUM_0526___y 1251 TCACATGAATGAAAAAGACATTCGGACATGTTTAGGGAACTTCCTCTTTT 1300
BSNT_01037___ 1301 CCGGAGATGATGTGCTGAAA-CCAGTTCATTCACTGAGCGGAGGCGAAAA 1349
||||.||.||.|| ||.||| ||.||||||.||.|.|||||.||.|||||
BPUM_0526___y 1301 CCGGTGACGACGT-CTTAAAGCCCGTTCATGCATTAAGCGGTGGAGAAAA 1349
BSNT_01037___ 1350 AGCAAGATTGGCTCTAGCTAAGCTGATGCTTCAAAAAGCCAACTTTCTCA 1399
|||..|..|.||.||.||.|||||||||||.|||||||||||.||.||.|
BPUM_0526___y 1350 AGCGCGCCTTGCCCTGGCAAAGCTGATGCTCCAAAAAGCCAATTTCCTGA 1399
BSNT_01037___ 1400 TCCTTGATGAACCGACTAACCATCTGGATTTAGACAGCAAAGAAGTTCTC 1449
|.|||||||||||.||.||||||.||||.|||||.||.||.|||.||.|.
BPUM_0526___y 1400 TACTTGATGAACCTACGAACCATTTGGACTTAGATAGTAAGGAAATTTTA 1449
BSNT_01037___ 1450 GAAAACGCGCTGATTGATTATCCAGGCACACTGTTATTTGTCTCACATGA 1499
|||||.|||||.|||||||||||.||.||..|.|||||||||||.|||||
BPUM_0526___y 1450 GAAAATGCGCTCATTGATTATCCGGGAACTATCTTATTTGTCTCGCATGA 1499
BSNT_01037___ 1500 CAGATATTTTATTAACAGAATCGCCACAAGAGTATTGGAGCTTT---CTT 1546
|.|.||||||||.|||.|..|.||.||.|.||||||.|||||.| ||.
BPUM_0526___y 1500 CCGTTATTTTATCAACCGCCTAGCAACGAAAGTATTCGAGCTGTCACCTA 1549
BSNT_01037___ 1547 CA-AGCCATATAGAGGAGTATCTGGGAGATTACGATTATTATAC----AG 1591
|| |..|| ||| ||||||||.||.||.||.||.||.||| | |.
BPUM_0526___y 1550 CAGAAACA---AGA-GAGTATCTCGGTGACTATGACTACTAT-CTTGAAA 1594
BSNT_01037___ 1592 AGAAAAA--AACA--GAGCAGCTTGA----ATTGGAGAAAATAAATCAGC 1633
|||||.| |||| .|| ||||||| |||..|||||||.|..| ||
BPUM_0526___y 1595 AGAAAGATGAACAATTAG-AGCTTGAGGCGATTCAAGAAAATGAGGC-GC 1642
BSNT_01037___ 1634 ---AAGAAGAAACTGAAAAAACGCCAGCTACTGTGAAGTCTGACTCCAAA 1680
||.||.||.|.|.||| ||||| .|||| ||..||||
BPUM_0526___y 1643 TTAAAAAACAAGCAGCAAA---GCCAG-----TTGAA-----ACAGCAAA 1679
BSNT_01037___ 1681 -CGTTCCTACGAGGAAGAAAAAGAATGGAAAAAGAAAGAGCGCCAACGAC 1729
|.|||.||.|..||||||||||||...|||||||||||..|.|||...|
BPUM_0526___y 1680 GCTTTCTTATGCAGAAGAAAAAGAACTAAAAAAGAAAGAAAGACAAAAGC 1729
BSNT_01037___ 1730 TCCGTCGGATTGAAGAAATTGAAACCACCG--TTCAAACCATTGAGGAGA 1777
..|||.|.||.||.||||||||| .|.|| ||...|.||||||.|.||
BPUM_0526___y 1730 AGCGTAGAATCGAGGAAATTGAA--GAACGGATTGCTATCATTGAAGCGA 1777
BSNT_01037___ 1778 ACATCAGCCGCAATGATGAATTGCTATGTGACCCTGAAGTCTA----TCA 1823
|..|..|...||||||.||..|.||||||||.|||| ||| |||
BPUM_0526___y 1778 AGCTTGGTGACAATGAAGAGCTTCTATGTGATCCTG----CTATTTTTCA 1823
BSNT_01037___ 1824 GGATCATGAAAAAGTACAAGCTATCCATGCAGACAATGAGAAGCTCA--- 1870
.|||||.||.||.||.|||...||.||...|||.|||||.| ||
BPUM_0526___y 1824 AGATCACGAGAAGGTCCAAAACATTCAAATAGAAAATGATA----CATTT 1869
BSNT_01037___ 1871 -ATCAGGAGCTGGAATCTCTTTTGTCCGAATGGGAAGAACTATCCACAGA 1919
||||.|||||.|||||.|||||..|.||.||||||||.||||||
BPUM_0526___y 1870 CATCAAGAGCTCGAATCCCTTTTCGCAGAGTGGGAAGAGCTATCC----- 1914
BSNT_01037___ 1920 AGAAGATTAA 1929
|||..||||
BPUM_0526___y 1915 -GAATCTTAA 1923
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