Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01032 and BPUM_0523
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01032___ydiC.1.24716.seq
# -bsequence dna-align/BPUM_0523___ydiC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01032___ydiC-BPUM_0523___ydiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01032___ydiC-BPUM_0523___ydiC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01032___ydiC
# 2: BPUM_0523___ydiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity: 467/765 (61.0%)
# Similarity: 467/765 (61.0%)
# Gaps: 150/765 (19.6%)
# Score: 1392.5
#
#
#=======================================
BSNT_01032___ 1 ATGACAATATTAGCAATTGATACATCAAATTATACATTGGGCATTGCGCT 50
.||||.|||.|.|||||||||||.|||||..|||||.|.||.|||||.||
BPUM_0523___y 1 TTGACCATACTGGCAATTGATACGTCAAACCATACACTAGGAATTGCCCT 50
BSNT_01032___ 51 -------GCTTCGAGAAGACACTGTTATAGCAGAATACATTACATATTTG 93
|.||| ||..||.||.|..|||...|||||.|||||.
BPUM_0523___y 51 TGTCAAAGATTC-------CATAGTGATTGGTGAAAGTATTACGTATTTA 93
BSNT_01032___ 94 AAAAAGAACCACTCTGTAAGAGCGATGCCTGCTGTTCATTCATTGCTGAA 143
|||||||||||.||.||..||||||||||..|||||.|..|||||.||||
BPUM_0523___y 94 AAAAAGAACCATTCCGTCCGAGCGATGCCGACTGTTGAGGCATTGATGAA 143
BSNT_01032___ 144 TGATTGTGATATGGCACCGCAG-GACCTTTCTAAAATTGTCGTTGCAAAA 192
.||.||||.|.|.||.|| .|| ||.||...|||||||||.||.||||||
BPUM_0523___y 144 AGAATGTGGTGTAGCGCC-AAGTGAACTAAGTAAAATTGTTGTAGCAAAA 192
BSNT_01032___ 193 GGCCCAGGTTCATACACAGGAGTAAGAATAGGTGTGACGTTGGCCAAAAC 242
||.||.|||||.|||||.||.||..||||.||||||||..|.||.|||||
BPUM_0523___y 193 GGACCTGGTTCCTACACTGGCGTTCGAATCGGTGTGACCATTGCAAAAAC 242
BSNT_01032___ 243 ACTTGCCTG------GTCTTTAGACATTCCAATAAGTGCTGTATCAAGTC 286
|||.||.|| |||| ||.||.|||...|||||.||.|||.
BPUM_0523___y 243 ACTCGCATGGACGCTGTCT------ATCCCGATATCGGCTGTTTCGAGTT 286
BSNT_01032___ 287 TTGAGACGCTTGCGGCAAATGGCCGGCATTTTGACGGTCTGATCAGCCCA 336
|.||.||.||||||||||||||.|...|.|||||.||...||||...|||
BPUM_0523___y 287 TGGAAACACTTGCGGCAAATGGTCAATACTTTGATGGATGGATCTCACCA 336
BSNT_01032___ 337 ATCTTTGATGCTAGACGGGGACAGGTGTACACAGG------TCTGTATCA 380
.|.||||||||.|||.|.|||||.||.||.||.|| |.|||.|.|
BPUM_0523___y 337 CTATTTGATGCGAGAAGAGGACAAGTTTATACTGGGCTATATATGTTTGA 386
BSNT_01032___ 381 ATAT--AAAAAT----GGGCTTTTAGAGCAAGTTGTTCCAGATCAAAATG 424
|.|| |||||| | |||.||| .|.|||.||||||.
BPUM_0523___y 387 AGATGGAAAAATCCAAG-------AGATCAA-----ACAAGACCAAAATA 424
BSNT_01032___ 425 TGATGCTGGCAGATTGGCT---GGAGATGCTAAAAGA----AAAGGGGCG 467
|..||||..|.|||||||| .|||.|| .|||||| ||||
BPUM_0523___y 425 TCTTGCTCACGGATTGGCTTCATGAGCTG-AAAAAGACAGGAAAG----- 468
BSNT_01032___ 468 TCCTGTTTTGTTTTTAGGTCACGACACTTCTATTCACAAGCAGATGATAA 517
|||||..|.|||.|.|| |.
BPUM_0523___y 469 -CCTGTCCTATTTCTTGG------------------------------AC 487
BSNT_01032___ 518 AGGATGT---TCTT--AGAACAAAAGGATT-----CATT------GGAAC 551
||||||| |||| .||| .|.||.||| |||| |.|||
BPUM_0523___y 488 AGGATGTGCATCTTCATGAA-GAGAGCATTCGCTCCATTTTAGGAGAAAC 536
BSNT_01032___ 552 TGCTG----CCCAG-----------CATAACCCGCGTCCTTCAGAA---T 583
.|||| |.||| ||||||||..|.||||| || |
BPUM_0523___y 537 GGCTGTGATCGCAGAGGGAGCTTTTCATAACCCAAGACCTTC--AATGCT 584
BSNT_01032___ 584 TGGCTTTTCTCGGGA-AGGAAAAGGAA-------GCAGCTGATGTTCATG 625
||.||||| |.|||| || | ||||..|||||.|||.
BPUM_0523___y 585 TGCCTTTT-TAGGGACAG--------ATCGTCCTGCAGAGGATGTCCATC 625
BSNT_01032___ 626 GGCTTGTCCCGGATTACTTGCGGCTGGCAGAAGCTGAAGCGAAATGGATT 675
.||||||.||..|.||..|.||..||||||||||.||||.|||||||.||
BPUM_0523___y 626 AGCTTGTACCTAACTATATTCGTATGGCAGAAGCGGAAGTGAAATGGCTT 675
BSNT_01032___ 676 GAAAGTCAAAAGTAG 690
|||.|.|||||.||.
BPUM_0523___y 676 GAAGGACAAAAATAA 690
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