Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00042 and BPUM_0519
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00042___yaaL.1.24716.seq
# -bsequence dna-align/BPUM_0519___yaaL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00042___yaaL-BPUM_0519___yaaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00042___yaaL-BPUM_0519___yaaL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00042___yaaL
# 2: BPUM_0519___yaaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 232
# Identity: 173/232 (74.6%)
# Similarity: 173/232 (74.6%)
# Gaps: 14/232 ( 6.0%)
# Score: 622.5
#
#
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BSNT_00042___ 1 ATGGGTTTTCTTCGCAAGAAAA-CATTAAGAAGAGAGTTTGATGAAAAAC 49
||||||||||||||| |||||| ||.|..|||.|||.||.|||||.|||.
BPUM_0519___y 1 ATGGGTTTTCTTCGC-AGAAAATCAATTCGAAAAGAATTCGATGAGAAAT 49
BSNT_00042___ 50 TAACCGAGCAGCTTTTTAAGCAAAAGGAAGAGTGGAACAGGCAAAAAAAG 99
|||...|.|||||||||||||||||||||||.||||||||.|||||||||
BPUM_0519___y 50 TAATTCAACAGCTTTTTAAGCAAAAGGAAGAATGGAACAGACAAAAAAAG 99
BSNT_00042___ 100 CTGGTCGAAAAAAGCTTAGAACCGTCTGCTGAAGTGTTATACGAACTGAA 149
||.||||.|||.|||.|.||.||.||..|.||..|..|||.|||| |.||
BPUM_0519___y 100 CTTGTCGCAAATAGCGTTGAGCCTTCACCGGACATTCTATTCGAA-TTAA 148
BSNT_00042___ 150 AG-TAGCTGAAGCGAAGTATTTTTTTTACTTAAGGGAAGCGAAGCAGCGA 198
|| |.|||.||||||||||.|||||.||..||||.||||||||..||.||
BPUM_0519___y 149 AGCTTGCTCAAGCGAAGTACTTTTTCTATCTAAGAGAAGCGAAAAAGAGA 198
BSNT_00042___ 199 AATTTA-----AAAATCAGCCGGTGGAAGTAA 225
|||||| ||| ||.|.||.|..||
BPUM_0519___y 199 AATTTACGTTTAAA--CAACTGGAGATAG--- 225
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