Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00039 and BPUM_0516
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00039___dnaX.1.24716.seq
# -bsequence dna-align/BPUM_0516___dnaX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00039___dnaX-BPUM_0516___dnaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00039___dnaX-BPUM_0516___dnaX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00039___dnaX
# 2: BPUM_0516___dnaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1784
# Identity: 1250/1784 (70.1%)
# Similarity: 1250/1784 (70.1%)
# Gaps: 163/1784 ( 9.1%)
# Score: 4304.5
#
#
#=======================================
BSNT_00039___ 1 GTGAGTTACCAAGCTTTATATCGAGTATTCAGGCCTCAGCGCTTTGAAGA 50
||||||||.||||||||.||||||||.|||||.|||||....|||||.||
BPUM_0516___d 1 GTGAGTTATCAAGCTTTGTATCGAGTGTTCAGACCTCAAGTTTTTGAGGA 50
BSNT_00039___ 51 TGTGGTCGGACAAGAACACATTACAAAAACGCTGCAAAATGCCCTTTTGC 100
|||.||.||||||||||||||.|||||||||.||||||||||||||||||
BPUM_0516___d 51 TGTTGTTGGACAAGAACACATCACAAAAACGTTGCAAAATGCCCTTTTGC 100
BSNT_00039___ 101 AAAAAAAGTTTTCTCACGCCTATCTGTTTTCCGGGCCAAGAGGAACCGGA 150
|.||.|||||||||||.||.||..|.|||||.||.||.||||||||.||.
BPUM_0516___d 101 AGAAGAAGTTTTCTCATGCTTACTTATTTTCAGGTCCTAGAGGAACAGGT 150
BSNT_00039___ 151 AAAACCAGTGCAGCCAAAATATTTGCTAAGGCTGTCAACTGTGAACATGC 200
|||||.|||||.||.|||||.|||||.|||||.||.|||||||||.|..|
BPUM_0516___d 151 AAAACAAGTGCTGCTAAAATCTTTGCGAAGGCAGTGAACTGTGAAAAGTC 200
BSNT_00039___ 201 TCCTGTTGA-TGAGCCATGCAACGAATGTGCGGCCTGTAAAGGGATAACA 249
.|||| ||| |||.||.||.||.|||||||..||.|||||||||||.|||
BPUM_0516___d 201 ACCTG-TGAGTGAACCTTGTAATGAATGTGATGCTTGTAAAGGGATTACA 249
BSNT_00039___ 250 AACGGGTCAATATCCGATGTCATAGAAATTGACGCCGCTTCTAATAACGG 299
|||||.|||||.||.|||||.||.|||||.||.||.||.||.||.|||||
BPUM_0516___d 250 AACGGCTCAATTTCAGATGTGATCGAAATAGATGCTGCCTCAAACAACGG 299
BSNT_00039___ 300 TGTTGATGAGATTCGTGACATTCGCGATAAAGTGAAGTTTGCCCCATCGG 349
.||.|||||.||.|||||.||.||.|||||||||||.|||||.||.||||
BPUM_0516___d 300 GGTAGATGAAATCCGTGATATACGTGATAAAGTGAAATTTGCTCCTTCGG 349
BSNT_00039___ 350 CCGTCACATATAAGGTATATATCATAGATGAGGTGCATATGCTTTCTATC 399
|.||.|||||||||||.|||||.||||||||.||.||||||||.||||||
BPUM_0516___d 350 CTGTTACATATAAGGTTTATATTATAGATGAAGTACATATGCTCTCTATC 399
BSNT_00039___ 400 GGCGCTTTTAATGCATTACTAAAAACATTAGAAGAGCCGCCTGAGCATTG 449
||.||.||||||||..|.||.|||||.|||||.||||||||||..|||||
BPUM_0516___d 400 GGGGCGTTTAATGCCCTTCTTAAAACGTTAGAGGAGCCGCCTGCTCATTG 449
BSNT_00039___ 450 TATCTTCATATTAGCAACAACTGAACCGCACAAAATTCCTTTAACCATTA 499
||||||.||.|||||.||.||.||.||.||.||.||||||.|.||.||.|
BPUM_0516___d 450 TATCTTTATTTTAGCTACCACAGAGCCTCATAAGATTCCTCTTACGATCA 499
BSNT_00039___ 500 TCTCTAGATGTCAGCGTTTTGACTTTAAACGAATTACCTCCCAAGCGATT 549
|.|||.|.||||||.|.|||||.|||||||||||.||..|..|||..|||
BPUM_0516___d 500 TATCTCGTTGTCAGAGATTTGATTTTAAACGAATCACGACAAAAGATATT 549
BSNT_00039___ 550 GTAGGGCGCATGAATAAAATTGTTGATGCTGAACAG-CTGCAAGTGGAGG 598
||.||..|.|||.|.||||||||.|||||.||| || ||..|.||..|.|
BPUM_0516___d 550 GTTGGAAGAATGCAGAAAATTGTAGATGCAGAA-AGCCTAAATGTACAAG 598
BSNT_00039___ 599 AAGGATCGCTGGATATCATCGCGAGTGCTGCAGACGGAGGGATGAGGGAT 648
|.||.|||||.||.||.|||||.|||||.||.||.||.||.|||.|.|||
BPUM_0516___d 599 AGGGCTCGCTCGAGATTATCGCTAGTGCAGCTGATGGCGGTATGCGTGAT 648
BSNT_00039___ 649 GCCCTGAGCCTTCTT-GATCAGGCCATATCATTCAGCGGCGATATCCTGA 697
||..|.|||| |||| |||||.|||||.||.||.||.||.||....||||
BPUM_0516___d 649 GCATTAAGCC-TCTTAGATCAAGCCATTTCGTTTAGTGGTGAGCAACTGA 697
BSNT_00039___ 698 AAGTCGAAGATGCGCTTTTAATTACGGGTGCTGTTTCT---CAATT-ATA 743
.|.|.||.||||||||..|.|||||.||.||||||||| ||||| ||
BPUM_0516___d 698 CAATTGATGATGCGCTGCTCATTACAGGAGCTGTTTCTCAGCAATTCAT- 746
BSNT_00039___ 744 TA-TCGGGAAGCTTGCACAATCCCTGCA-----TGATAAAAACGTTTCTG 787
|| || ||.|.||..|| ||| ||||.||||..||.|.|
BPUM_0516___d 747 TAGTC----AGTTAGCCGAA-----GCAATTTTTGATCAAAATATTGCCG 787
BSNT_00039___ 788 ACGCACTGGAAACATTAAATGAATTGCTTCAGCAAGGAAAAGATCCAGCT 837
..||..|.||.||.|||||||||||.||||||||.||.||||||.|.|||
BPUM_0516___d 788 TGGCGTTAGATACCTTAAATGAATTACTTCAGCAGGGGAAAGATGCTGCT 837
BSNT_00039___ 838 AAGCTGATAGAAGATATGATTTTCTATTTCAGGGACATGCTGCTGTACAA 887
||..|.|||||.||.||||||||.||.||.||.||.||||||||.||.||
BPUM_0516___d 838 AAATTAATAGAGGACATGATTTTTTACTTTAGAGATATGCTGCTTTATAA 887
BSNT_00039___ 888 AACAGCCCCTGGCTTAGAGGGAGTGCTTGAGAAAGTAAAAGTCGATGAAA 937
||||||.||.|...|.||.||.||.|||||.||.|||||.||||||||||
BPUM_0516___d 888 AACAGCACCAGATCTGGAAGGGGTCCTTGAAAAGGTAAAGGTCGATGAAA 937
BSNT_00039___ 938 CGTTC----------CGGAAACTAAGTGA-ACAAATTCCGGCTCAGGCCC 976
..||| ||||...| |||| || ||||....|
BPUM_0516___d 938 ATTTCGTGACGCTTTCGGATCGT--GTGACAC---------CTCAATTTC 976
BSNT_00039___ 977 TATATGAAATGATTGATATTCTGAACAAGAGCCATCAGGAAATGAAATGG 1026
|||||||||..|||||..|.|||||.||.||.||.||.||||||||.|||
BPUM_0516___d 977 TATATGAAACAATTGAAGTGCTGAATAAAAGTCACCAAGAAATGAAGTGG 1026
BSNT_00039___ 1027 ACAAATCATCCGCGTATCTTTTTCGAAGTGGCCGTTGTGAAGATTTGCCA 1076
||.||||||||..|.||.||.||.||.||.||.|||||.|||.|.||.||
BPUM_0516___d 1027 ACGAATCATCCAAGGATTTTCTTTGAGGTAGCTGTTGTCAAGCTATGTCA 1076
BSNT_00039___ 1077 ---AAC--CT-------CACA---TCAATCTGCT---GCTGATCTCCCGG 1108
||| || |||| ||| |||| ||||||.|..||
BPUM_0516___d 1077 GGCAACGGCTGGAATACCACAAGCTCA---TGCTAACGCTGATTTAACG- 1122
BSNT_00039___ 1109 AAGTGGATATGCTGATGAAAAAAAT--CCAGCAGCTCGAACAGGAAGTAG 1156
|.|||.|.|.|.||||| .||| |.|.||||||||..||.
BPUM_0516___d 1123 --------ACGCTAACGGATAAAATAGACAG--GTTGGAACAGGAGCTAT 1162
BSNT_00039___ 1157 AGCGGCTCAAAACAACGGG-------------CAT----AAAAGCAGCTG 1189
...||.|||||.|...||| ||| ||.|.| ||.
BPUM_0516___d 1163 CTAGGATCAAAGCTGAGGGTGTGCCAATGTCTCATTCTCAACATC--CTC 1210
BSNT_00039___ 1190 CGGAAAGCCCGAAAAAAGAAGCGCCGCGTGTGCCAAAGGGCGGGAAATCC 1239
..||| |||||.|||||.||.|| .||| .||.|.
BPUM_0516___d 1211 AAGAA------AAAAAGGAAGCACCTCG---ACCA---------CAAACG 1242
BSNT_00039___ 1240 AATTACAAA------------GCGCCAGTAGGCAGAATTCATGAGATTTT 1277
|.|.||||| ||.||.||.|||.|||||||.||||||.|
BPUM_0516___d 1243 AGTAACAAAAATGGATATCGTGCACCTGTCGGCCGAATTCACGAGATTCT 1292
BSNT_00039___ 1278 GAAGGAAGCCACAAGACCGGATCTTGATCTGCTCAGAAA-------CAGT 1320
.||.|||||.|.|.|.||.||..|.|| |.||| ||..
BPUM_0516___d 1293 AAAAGAAGCAAAACGTCCAGAGTTAGA-------AAAAATTAAAGGCAAA 1335
BSNT_00039___ 1321 TGGGGCAAGCTTCTTGCTCATCTCAAACAGCAAAACAAAGTATCGCATGC 1370
|||||..|.||.|||||.||..|.||||||||.||.||.||.||.||.||
BPUM_0516___d 1336 TGGGGAGAACTCCTTGCCCACTTGAAACAGCAGAATAAGGTGTCTCACGC 1385
BSNT_00039___ 1371 CGCTTTGCTGAATGACAGTGAACCTGTGGCTGCCGGATCGGC------GG 1414
.||..|..|.|..||.||||||||.||.|||| |||| .|
BPUM_0516___d 1386 TGCACTATTAACGGATAGTGAACCAGTTGCTG------CGGCTACTCATG 1429
BSNT_00039___ 1415 CATTTGTTCTGAAATTCAAATATGAAATTCATTGTAAAATGGTTGCTGAG 1464
|.||||||.|.||||||||.|.||||||.||||||||||||||||||||.
BPUM_0516___d 1430 CCTTTGTTTTAAAATTCAAGTTTGAAATACATTGTAAAATGGTTGCTGAA 1479
BSNT_00039___ 1465 GATAACAACGGAGTCCGGACTAATCTTGAGCAGATTTTAGAATCGATGCT 1514
|||||.|.|||.||.||.|||||||||||||||.|..||||.||.|||.|
BPUM_0516___d 1480 GATAAAAGCGGTGTTCGAACTAATCTTGAGCAGCTACTAGAGTCTATGTT 1529
BSNT_00039___ 1515 CGGAAAAAGAATGGATTTGATTGGCGTTCCAGAAGCACAATGGGGTAAAA 1564
.||.||||||.||||.||..||||||||||.||.||.|||||||||||||
BPUM_0516___d 1530 AGGGAAAAGAGTGGAATTAGTTGGCGTTCCTGACGCTCAATGGGGTAAAA 1579
BSNT_00039___ 1565 TAAGAGAAGAATTTTTAGAAGATCATCAGC---AGGAAAATGAAG--GAT 1609
|||||||||||||||||..||||||||||| |.|||.|.|.|| |.|
BPUM_0516___d 1580 TAAGAGAAGAATTTTTAAGAGATCATCAGCCAGATGAACAGGCAGATGGT 1629
BSNT_00039___ 1610 CAAATGA-ACCGGCTGAAGAAGACCCGCTTATTGCCGAAGCGAAAAAGCT 1658
||...|| .||.||||||||.||.||..|.|||||.|||||.||.|||.|
BPUM_0516___d 1630 CAGGGGACTCCTGCTGAAGAGGATCCATTGATTGCAGAAGCAAAGAAGTT 1679
BSNT_00039___ 1659 TGTTGGAGCGGATTTAATTGAAATAAAAGACTAA 1692
.||.|||.|.||||||||||||||.|||||.|||
BPUM_0516___d 1680 AGTAGGAACCGATTTAATTGAAATTAAAGATTAA 1713
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