Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00035 and BPUM_0514
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00035___yaaI.1.24716.seq
# -bsequence dna-align/BPUM_0514___yaaI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00035___yaaI-BPUM_0514___yaaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00035___yaaI-BPUM_0514___yaaI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00035___yaaI
# 2: BPUM_0514___yaaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 589
# Identity: 394/589 (66.9%)
# Similarity: 394/589 (66.9%)
# Gaps: 77/589 (13.1%)
# Score: 1206.0
#
#
#=======================================
BSNT_00035___ 1 TTGTCCAAAGCA-GATACAGCCCTTCTCATTGTAGACATGATCAATAATT 49
||| |.|||||| .|.|..||.||.||.|||.|.||||||||.|||||||
BPUM_0514___y 1 TTG-CAAAAGCACCAAAAGGCACTGCTGATTATTGACATGATTAATAATT 49
BSNT_00035___ 50 TTGAATTCGATATGGGAGAAACCCTCGCTAAAAAAACAGAAAAAATCGTT 99
||||.||.||.||||||.|....||||||.|.||||||||..|||| ..
BPUM_0514___y 50 TTGACTTTGAAATGGGACATGTACTCGCTGATAAAACAGAGCAAAT--GA 97
BSNT_00035___ 100 CC--TCATATTTTA--TCATTAAAGGAGCACG----CGAGACAAAATGAA 141
|| |.|.|||||| || ||||| ||.||.| |.|| .|||||
BPUM_0514___y 98 CCAATAAGATTTTAGCTC-TTAAA-GATCATGCTTTCAAG-GAAAAT--- 141
BSNT_00035___ 142 TGGCCGATTATTTACATCAATGATCATTATGGACTTTGGCAAGCTGACAT 191
||||||||.||.||.|||||.||.||.|||||.||.|||.|.|||||.||
BPUM_0514___y 142 TGGCCGATCATCTATATCAACGACCACTATGGTCTCTGGAAGGCTGATAT 191
BSNT_00035___ 192 TAAAAACATTCAGC--------AAGAATGCACAAATGAAAGAAGCAAGGA 233
|.| ||| ||..|||||.|||.||.||||||...|.
BPUM_0514___y 192 TCA--------AGCTGTGATGGAAACATGCAAAAACGAGAGAAGCTCCGC 233
BSNT_00035___ 234 TATCATCACA-AAGATAGCTC---CGAAAGATGCTGATTATTTTTTAATC 279
||| .|.|.| ||.||.||.| |.||||| |||||||||.|||||.
BPUM_0514___y 234 TAT-TTTAGAGAAAATGGCACCATCAAAAGA---TGATTATTTCTTAATT 279
BSNT_00035___ 280 AAACCGAAACATTCCGCTTTCTACGAAACTGCACTTCACACCCTTCTT-A 328
||||||||.|||||.||.|||||.|..||||||.|..|.||.| |||| |
BPUM_0514___y 280 AAACCGAAGCATTCTGCCTTCTATGGTACTGCATTAGAGACAC-TCTTAA 328
BSNT_00035___ 329 CTGAGTTGCAGGTG----AGACAT-ATTATCTTAACAGGTATAGCCGGCA 373
.|||.|| ||||| |||||| ||| ||.||.||.||.||.||.|
BPUM_0514___y 329 ATGAATT--AGGTGTACAAGACATCATT---TTGACCGGAATTGCAGGAA 373
BSNT_00035___ 374 ATATATGTGTGCTGTTTACTGCTAATGACGCTTATATGAGGGAATACAGC 423
|.||.||.||.||.||.|||||.||||||||.||.|||.|.|||||||.|
BPUM_0514___y 374 ACATTTGCGTTCTATTCACTGCAAATGACGCATACATGCGAGAATACAAC 423
BSNT_00035___ 424 ATCACGATTCCTAAGGACTGTATCGCGTCAAACAGTGACGA---AGATAA 470
.|.|...|.|||||.||.||||||||.||||| |||||| |||.||
BPUM_0514___y 424 TTAATTGTACCTAAAGATTGTATCGCATCAAA---TGACGACAGAGACAA 470
BSNT_00035___ 471 CGAATTCGCCTTAACTATGATGGAGAATGTTCTTTTCGCAGAAATTACGA 520
|||||..||.|||||.||||||||.||.|||||..|.|||.||||.||.|
BPUM_0514___y 471 CGAATATGCTTTAACGATGATGGAAAACGTTCTACTTGCAAAAATCACCA 520
BSNT_00035___ 521 CGG---AAGA----ACAAATTACAGAAAAATAA------ 546
|.| |||| ||.||| |||||..||
BPUM_0514___y 521 CTGCTAAAGAGATCACGAAT----GAAAATCAAACATGA 555
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