Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00032 and BPUM_0512
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00032___dgk.1.24716.seq
# -bsequence dna-align/BPUM_0512___dgk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00032___dgk-BPUM_0512___dgk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00032___dgk-BPUM_0512___dgk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00032___dgk
# 2: BPUM_0512___dgk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 429/677 (63.4%)
# Similarity: 429/677 (63.4%)
# Gaps: 106/677 (15.7%)
# Score: 1305.5
#
#
#=======================================
BSNT_00032___ 1 ATGAATACAGCCCCTTTTATTGCAATAGAAGGTCCTATCGGGGCAGGAAA 50
|||.||.|.|||||||||||||||.|.|||||.||.||.||.||.|||||
BPUM_0512___d 1 ATGTATCCTGCCCCTTTTATTGCAGTGGAAGGCCCAATTGGAGCCGGAAA 50
BSNT_00032___ 51 AACAACTCTCGCAACGATGCTCTCACAAGAATTCGGATTCCCTATGATCA 100
|||||||.|.||.||.|||||..|..|.|||||...|||.|||.|..|.|
BPUM_0512___d 51 AACAACTTTGGCTACAATGCTTGCGAAGGAATTTCAATTTCCTTTAGTAA 100
BSNT_00032___ 101 ATGAGATTGTAGAGGATAACCCGTACCTTGATAAGTTTTATGACAATATA 150
|.|||||||||||.||.||.||.|.|.|.|||||.||||||||..||||.
BPUM_0512___d 101 AAGAGATTGTAGAAGAAAATCCATTCTTAGATAAATTTTATGAAGATATG 150
BSNT_00032___ 151 GAGGAATGGAGCTTCCAGCTCGAGATGTTTTTTCTTTGTCACAGATACAA 200
||..||||||||||.|||||.||||||||.|||.|.||..|..|.|.|||
BPUM_0512___d 151 GAACAATGGAGCTTTCAGCTTGAGATGTTCTTTTTATGCAATCGGTTCAA 200
BSNT_00032___ 201 ACAGCTTGAA--GACACCAGTGATCACTTTTTAAAA--AAGGGA------ 240
||||.|.||| ||..|.|| |||| |.|.||
BPUM_0512___d 201 ACAGTTAGAATCGATTCAAG------------AAAACTATGTGAATCATC 238
BSNT_00032___ 241 --CAGCC---TGTAATAGCTGATTATCATATTTATAAAAATGTGATTTTT 285
||||| |||.| |||||||||||.|.|||||||||.||||.|||
BPUM_0512___d 239 AGCAGCCGATTGTCA---CTGATTATCATGTATATAAAAATATGATATTT 285
BSNT_00032___ 286 GCGGAACGCACCTTGTCTCCACATCAGCTGGAAAAATACAAAAAGATATA 335
||.|||.|.||.||.||...|.|.||..||||.|||||||.||||||.||
BPUM_0512___d 286 GCAGAAAGAACATTATCGAAAAAGCACATGGACAAATACAGAAAGATCTA 335
BSNT_00032___ 336 TCACCTGCTAACGGATGATCTGCCAAAGCCGAATTTCATCATTTACATAA 385
||||.|||||||.||||||||.||.||.||.|||..||||||.||.||||
BPUM_0512___d 336 TCACTTGCTAACAGATGATCTTCCTAAACCCAATGCCATCATCTATATAA 385
BSNT_00032___ 386 AGGCCAGTCTGCCTACATTGCTACACCGCATTGAAAAA---------CGC 426
|.|||||.||.|||||.||.| ||||||.| .|.
BPUM_0512___d 386 AAGCCAGCCTTCCTACCTTAC---------TTGAAAGAATACAGATGAGA 426
BSNT_00032___ 427 GGGCGCCCCTTTGAGAAAAAAATTGAAACTAGC-TATTT-GGAGCAGCTG 474
||.|||.|.|||||..||.|.|||| |.|.||| ||||| ..|.|| ||.
BPUM_0512___d 427 GGACGCTCTTTTGAAGAAGACATTG-ACCCAGCTTATTTAAAAACA-CTC 474
BSNT_00032___ 475 ATTTCAGATTATGAAGTCGCCATCAAGCAGCTGCAGGAAGCAGACCCTGA 524
|||..|||||||||..|.|||||..|.||..| .||.|||| ||||
BPUM_0512___d 475 ATTGAAGATTATGAGCTGGCCATTGAACATTT----AAAACAGA--CTGA 518
BSNT_00032___ 525 AC---------------TTACAGTGTTAACCGTAGATGGTGATTCAAAGG 559
.| |||||.| |.|| |.||| |.||.|| |
BPUM_0512___d 519 CCCAGGGCTTCCTATCATTACAAT-TGAA--GGAGA---TCATACA---G 559
BSNT_00032___ 560 ATTTCGTTT----------TGAATAAGAGCGACTTTGAACGCATTG--CC 597
|.||||||| .||.||..|||.| |||| |.
BPUM_0512___d 560 ACTTCGTTTCCTCACAGCAAGATTACCAGCAA----------ATTGTACA 599
BSNT_00032___ 598 GCCCATGTAAAGGAGCTTATCGTATGA 624
|..|| |||||||||...|..|||||
BPUM_0512___d 600 GAACA--TAAAGGAGCAAGTGCTATGA 624
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