Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00027 and BPUM_0509
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00027___serS.1.24716.seq
# -bsequence dna-align/BPUM_0509___serS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00027___serS-BPUM_0509___serS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00027___serS-BPUM_0509___serS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00027___serS
# 2: BPUM_0509___serS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1341
# Identity: 1007/1341 (75.1%)
# Similarity: 1007/1341 (75.1%)
# Gaps: 72/1341 ( 5.4%)
# Score: 3884.5
#
#
#=======================================
BSNT_00027___ 1 ATGGGGATGAGGGCTCTTTTTATTTTCGACAAATCAATAAAAAAAGGAGT 50
BPUM_0509___s 0 -------------------------------------------------- 0
BSNT_00027___ 51 GTTTCGCATGCTTGATACGAAAATGCTGAGAGCAAATTTTCAAGAAATTA 100
|||||.||||..|||...|||.|..|..|.|||.|..||||.|
BPUM_0509___s 1 -------ATGCTGGATATTAAACAACTGCGCACGGACTTTGATCAAATCA 43
BSNT_00027___ 101 AAGCAAAGCTTGTACACAAAGGCGAAGACTTAACTGATTTTGATAAGTTT 150
|||.|||.||.|.||||...||||||||.|||.|.|||||||||||||||
BPUM_0509___s 44 AAGAAAAACTAGCACACCGTGGCGAAGATTTAGCGGATTTTGATAAGTTT 93
BSNT_00027___ 151 GAGGCGCTGGATGATAGACGAAGAGAGCTTATCGGCAAGGTTGAAGAGTT 200
|..|.|||||||.|.|.|.|||||||.||.|||||.||....||||..||
BPUM_0509___s 94 GGTGAGCTGGATCAAAAAAGAAGAGAACTAATCGGAAAAACAGAAGTATT 143
BSNT_00027___ 201 AAA-AG--GAAAACGAAATGAAGTTTCTCAGCAGGTTGCTGTGCTGAAGC 247
||| || ||| ||||||||||.||.|||||.||.|||||.||.||..
BPUM_0509___s 144 AAAGAGCCGAA---GAAATGAAGTATCACAGCAAGTGGCTGTTCTAAAAA 190
BSNT_00027___ 248 GTGAGAAAAAAGAAGCGGATCACATTATTAAAGAAATGCGTGAAGTCGGC 297
|.||.||.|||||.||.||||||||||||.|||||||||||||.||.||.
BPUM_0509___s 191 GAGAAAAGAAAGACGCCGATCACATTATTCAAGAAATGCGTGAGGTAGGA 240
BSNT_00027___ 298 GAGGAAATTAAAAAGCTTGATGAAGAATTGCGAACAGTGGAAGCTGAGCT 347
||.||.|||||.|||||.|||||.||..|..|||||||.|||| ..||||
BPUM_0509___s 241 GATGAGATTAAGAAGCTGGATGATGAGCTAAGAACAGTAGAAG-AAAGCT 289
BSNT_00027___ 348 TGATACA-ATCCTTCTCTCAATCCCGAATATTCCGCATGAGTCTGTACCT 396
||...|| |||.|..||||.||.||||||||.||||||||..|.|||||.
BPUM_0509___s 290 TGCAGCACATCTTATTCTCTATTCCGAATATCCCGCATGATACGGTACCA 339
BSNT_00027___ 397 GTCGGTGAAACAGAAGACGACAACGTAGAAGTGCGTAAATGGGGTGAAAA 446
||.||.|||||||||||.||||||||.||||||||.||||||||.|||.|
BPUM_0509___s 340 GTTGGGGAAACAGAAGATGACAACGTGGAAGTGCGAAAATGGGGCGAACA 389
BSNT_00027___ 447 GCCTTCATTTGCTTATGAGCCGAAGCCGCACTGGGATATTGCGGATGAGC 496
|||..||||..|||.||||||.|||||.||.|||||..|.||||||||||
BPUM_0509___s 390 GCCGGCATTCTCTTTTGAGCCAAAGCCACATTGGGACGTAGCGGATGAGC 439
BSNT_00027___ 497 TGGGTATTCTGGATTTTGAACGTGCTGCCAAAGTAACAGGAAGCCGTTTC 546
|....|||||.|||||||||||.||.|.||||||.||||||||||||||.
BPUM_0509___s 440 TAAACATTCTCGATTTTGAACGCGCAGGCAAAGTTACAGGAAGCCGTTTT 489
BSNT_00027___ 547 GTGTTCTATAAA-GGCTTAGGTGCTCGTCTGGAGCGTGCGCTTTATAACT 595
||.||.|||||| ||||| ||.||.||..|.|||||.||.||.|||||||
BPUM_0509___s 490 GTTTTTTATAAAGGGCTT-GGCGCACGCTTAGAGCGCGCACTATATAACT 538
BSNT_00027___ 596 TTATGCTTGATCTGCATGTGGATGAGTATAACTACACTGAAGTGATCCCG 645
|||||||.|||.|.||.||.|||||||.|...|..|||||||||.||||.
BPUM_0509___s 539 TTATGCTCGATTTACACGTAGATGAGTTTGGTTTTACTGAAGTGCTCCCA 588
BSNT_00027___ 646 CCATATATGGTAAACCGCGCAAGCATGACGGGAACGGGGCAGCTTCCTAA 695
||.||.|||||.||..|.|||||.|||||.||.||.|||||||||||.||
BPUM_0509___s 589 CCTTACATGGTCAATAGAGCAAGTATGACAGGGACTGGGCAGCTTCCAAA 638
BSNT_00027___ 696 ATTTGAAGAGGATGCATTTAAAATCAGAGAAGAAGATTATTTCTTAATTC 745
|||.|||||||||||.|||||||||.|.|||||||||||||||.|.||||
BPUM_0509___s 639 ATTCGAAGAGGATGCCTTTAAAATCCGTGAAGAAGATTATTTCCTCATTC 688
BSNT_00027___ 746 CAACGGCGGAAGTGCCGATTACAAACATGCATCGCGATGAAATCCTTTCA 795
||||.||.|||||.||.|||||.||||||||.||.||||||||..||..|
BPUM_0509___s 689 CAACAGCCGAAGTACCTATTACCAACATGCACCGTGATGAAATAATTGAA 738
BSNT_00027___ 796 GGTG-ACAGCCTGCCGATCAACTATGCGGCATTCAGTGCTTGCTTCCGTT 844
||.| ||| .|||||.|||||.|||||.|||||||||||||||||..|.|
BPUM_0509___s 739 GGGGAACA-ACTGCCAATCAATTATGCAGCATTCAGTGCTTGCTTTAGAT 787
BSNT_00027___ 845 CTGAAGCTGGTTCAGCAGGACGTGACACACGCGGATTAATTCGTCAGCAC 894
|.||||||||.||.||.||..|.||.|||||.|||.|.||.||||||||.
BPUM_0509___s 788 CAGAAGCTGGATCTGCCGGCAGAGATACACGTGGACTCATCCGTCAGCAT 837
BSNT_00027___ 895 CAATTTAATAAAGTTGAGCTTGTAAAGTTTGTGAAGCCTGAAGATTCTTA 944
||||||||||||||.||||||||.||.|||||.|..||||||||||||||
BPUM_0509___s 838 CAATTTAATAAAGTAGAGCTTGTGAAATTTGTTAGACCTGAAGATTCTTA 887
BSNT_00027___ 945 TGAAGAATTAGAGAAGCTTACAAACCAAGCAGAACGGGTTCTTCAGCTGC 994
|||||||||||||||.||.|||||.|||||||||...||.||.||.||.|
BPUM_0509___s 888 TGAAGAATTAGAGAAACTAACAAATCAAGCAGAAAAAGTCCTACAACTAC 937
BSNT_00027___ 995 TTGAGCTTCCATACCGTGTCATGAGCATGTGTACGGGTGATTTAGGCTTT 1044
|..|.||.||||||||||||||||||||||||||.||.||||||||.||.
BPUM_0509___s 938 TAAACCTACCATACCGTGTCATGAGCATGTGTACCGGAGATTTAGGTTTC 987
BSNT_00027___ 1045 ACGGCTGCGAAAAAATACGATATCGAAGTTTGGATTCCAAGCCAAGACAC 1094
||.|||||||||||||||||.||||||||.||||||||.||||||||.||
BPUM_0509___s 988 ACAGCTGCGAAAAAATACGACATCGAAGTATGGATTCCGAGCCAAGATAC 1037
BSNT_00027___ 1095 ATATCGAGAAATCTCTTCTTGCAGCAACTTCGAAGCGTTCCAGGCGAGAC 1144
.|||||.|||||.|||||||||||.|||||||||||||||||.||.||||
BPUM_0509___s 1038 GTATCGTGAAATTTCTTCTTGCAGTAACTTCGAAGCGTTCCAAGCAAGAC 1087
BSNT_00027___ 1145 GTGCGAATATTCGATTCAGACGTGAAGCGAAAGGCAAGCCTGAGCATGTA 1194
|.||.||.|||||||||.|.|..||..|.||||.||||||.||||||||.
BPUM_0509___s 1088 GCGCAAACATTCGATTCCGTCCAGAGCCTAAAGCCAAGCCAGAGCATGTG 1137
BSNT_00027___ 1195 CACACACTGAACGGTTCAGGACTGGCGGTTGGAAGAACAGTTGCCGCTAT 1244
||||||.|.||.||.||.||..|.||.||.||||||||.||.||.|||||
BPUM_0509___s 1138 CACACATTAAATGGATCTGGTTTAGCAGTAGGAAGAACCGTAGCGGCTAT 1187
BSNT_00027___ 1245 CTTAGAAAATTATCAGCAGGAAGACGGAAGCGTTGTGATTCCGAAAGTGC 1294
.||||||||.|||||.||.||.|||||.|..||..|.|||||..||||.|
BPUM_0509___s 1188 TTTAGAAAACTATCAACAAGAGGACGGCACTGTGATCATTCCTGAAGTAC 1237
BSNT_00027___ 1295 TTCGTCCTTATATGGGGAATAGAGAAGTAATGAAACCGTAA 1335
|.||||||||||||||.||||.||||||||||||| |||
BPUM_0509___s 1238 TGCGTCCTTATATGGGAAATAAAGAAGTAATGAAA---TAA 1275
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