Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00021 and BPUM_0503
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:57
# Commandline: needle
# -asequence dna-align/BSNT_00021___yaaC.1.24716.seq
# -bsequence dna-align/BPUM_0503___yaaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00021___yaaC-BPUM_0503___yaaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00021___yaaC-BPUM_0503___yaaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00021___yaaC
# 2: BPUM_0503___yaaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1073
# Identity: 628/1073 (58.5%)
# Similarity: 628/1073 (58.5%)
# Gaps: 229/1073 (21.3%)
# Score: 1691.5
#
#
#=======================================
BSNT_00021___ 1 ATGACATA--TCATGAGTGGAAAGACTTAGCGCTATTTTACTCCGTTGAA 48
|||| |.| |||.|| |||||.||.|||...|..||||||||..|.|||
BPUM_0503___y 1 ATGA-AAAGTTCAGGA-TGGAAGGATTTAAAACGTTTTTACTCACTCGAA 48
BSNT_00021___ 49 TCAACCCAGAAATTTCTA---GAAAAGGTTTATATCTTAAACG--GTATT 93
.|..||||.||.|||||| .||.| ||||...||||| |.|||
BPUM_0503___y 49 ACTTCCCAAAAGTTTCTATATCAACA-----ATATGAGAAACGGAGCATT 93
BSNT_00021___ 94 GACGATGCGAAAAAAAACTCTTTTAAAAACAGTGAACGGTTTATTTATTT 143
.|.|||||.||..|..|..|.|.|||||||.|||||||||||||||||||
BPUM_0503___y 94 CAAGATGCAAACCAGCAAGCCTATAAAAACTGTGAACGGTTTATTTATTT 143
BSNT_00021___ 144 CTTAAAGCATGCCGAATCGTTTTATAAACAAGCCGCATAT-TCTCCCTTA 192
.||||||||||...|..|.||.|||.||||.||.|| ||| .||||..|.
BPUM_0503___y 144 TTTAAAGCATGGTCATACATTCTATGAACAGGCAGC-TATCGCTCCACTC 192
BSNT_00021___ 193 GAAATCAAACCGATTCTTTTATTTTATGGAATGGCACAGCTTATCAAAGC 242
|||.|.||.||.|||.|.|||||||||||||||||.|||.|..|.||.||
BPUM_0503___y 193 GAACTGAAGCCCATTTTATTATTTTATGGAATGGCTCAGTTGCTAAAGGC 242
BSNT_00021___ 243 ATGCTTAATTACACGTGATCCTCATTATCCAAGCCATACATCAGTACTGG 292
|||.|||.|.|||..|||||||.|.|||||....||.||.||.||..|||
BPUM_0503___y 243 ATGTTTACTGACAGTTGATCCTTACTATCCTTCTCAAACTTCTGTTTTGG 292
BSNT_00021___ 293 CACATGGCGTAACAACAAGAAAACGAAAGAAACAAAATTATTGTTTTAGC 342
||||.||.||||||.|.|||||..|||||||.||..|.||..|||||||.
BPUM_0503___y 293 CACACGGTGTAACATCGAGAAAGAGAAAGAAGCAGCACTACCGTTTTAGT 342
BSNT_00021___ 343 GATGATGAAGTGAAAATACAACGAAATGGACTATGCGTGCATTTTATGAA 392
.|.||||||||||||||.||.|||||||||||||||.|||||.|..|.||
BPUM_0503___y 343 AAAGATGAAGTGAAAATTCAGCGAAATGGACTATGCATGCATGTGTTAAA 392
BSNT_00021___ 393 ACATTTATT---------CGGACAATCGGATATAGTAGATGAACGGTATA 433
.|||.|||| .|||| |.|.||||||.||.|.||
BPUM_0503___y 393 GCATCTATTTCATTTAAATGGAC---------TTGAAGATGAGCGATTTA 433
BSNT_00021___ 434 CCATGAAAAAATTATTAATGGCCATTC-CAGA-ACTTAGCGAT-----AT 476
|.||| |||.|...||.||| .||| ||.| |.||| ||
BPUM_0503___y 434 CGATG--------ATTCACCTCCTTTCAAAGATACCT-GAGATGAGTCAT 474
BSNT_00021___ 477 TTTCT--ACTTTCAGCAGAAAGAA-----CGATTTATGACA------AAA 513
.|||| |.||||| ||||.| | |||| |||
BPUM_0503___y 475 ATTCTGGAGTTTCA----AAAGCAGCCCTC-------GACATTAGTTAAA 513
BSNT_00021___ 514 GTTGAGAAGGATAA--GAACGA-AATTTTTGTACCGGAGGAAG-TAGTAA 559
||.||.||.||.|| |.|.|| .||| .||| |..||.
BPUM_0503___y 514 GTAGAAAAAGACAATGGCATGATGATT------------CAAGATCATAT 551
BSNT_00021___ 560 TCAA-----TTACAAAATGTCTGATTCAAGGTTTGCTGAATACAT---GT 601
||.| |||.||.|||||||.|..|.|.|||..||||||..| ||
BPUM_0503___y 552 TCCATTGCTTTATAACATGTCTGCTGAACGTTTTATTGAATATTTTGAGT 601
BSNT_00021___ 602 CCCATCATTATCAA--TGG--TCTTTTACAAA--------AAAAAATGAA 639
.||| || ||| ||| .|||..|||.| ||||||
BPUM_0503___y 602 TCCA-CA----CAAGTTGGAAACTTAAACAGAGAGAAGCGAAAAAA---- 642
BSNT_00021___ 640 CACGGGCTGCTGTTCGAAATTTCACCACAAGACAAGGAGCCATGGACATC 689
|||..|||.||..|.||.|.|.||||.|| || ||.|
BPUM_0503___y 643 ------CTGGCGTTTGATGTGTCTCTAGAAGAAAA----CC-----CAGC 677
BSNT_00021___ 690 G------AC-CAGCTT-ATTGTTTGACATGGAAAAGAACCAATATTATAT 731
| || ||.||| || |.|||..|.|||..|||.||||..|||||
BPUM_0503___y 678 GTTTGCTACTCATCTTCAT--TATGATTTAGAAGCGAATCAATGGTATAT 725
BSNT_00021___ 732 CCCTTCTCAAA---GGGAGCAATTTCTGAGGCTTCCCGAAATGACAATTC 778
.||.|| || |.||...||||.||.||.||||.||.||.|..|..|
BPUM_0503___y 726 TCCGTC---AACGCGTGATTCATTTTTGGGGATTCCTGAGATCATCAGCC 772
BSNT_00021___ 779 ATTATTTGATT-TTGTACAACGTTGGGATGATTGCAAGGTATGAAACAGA 827
||||.|| ||| .||||.|||.|..|.||||||||..|.|||||||||||
BPUM_0503___y 773 ATTACTT-ATTGATGTATAACCTCAGTATGATTGCCCGCTATGAAACAGA 821
BSNT_00021___ 828 ATGGTGGTATGAGTTATTAACACAGCATATAAGTGATGACTACGT----- 872
|||||||||.||..|..||.|.||..|.||.||||||||.|||||
BPUM_0503___y 822 ATGGTGGTACGAACTGCTATCTCAATACATTAGTGATGATTACGTCATGA 871
BSNT_00021___ 873 ------GTTA-------ATT----------------CAGCA--------G 885
|.|| ||| ||||| |
BPUM_0503___y 872 TCGAACGCTACATGGAGATTGCTGAAGAGAAGTTCCCAGCATATATCATG 921
BSNT_00021___ 886 TTTTTATTAGTAACAGAAAAGAAATTCCCTAAATACGCTTCACAGTTTCT 935
.|..|||||| ||.|.||||.||| |||.|| |||||.|
BPUM_0503___y 922 ATGCTATTAG-AAGAAAAAACAAA------AAAGAC------CAGTTCC- 957
BSNT_00021___ 936 TCTTCATTTTTAA---------- 948
||
BPUM_0503___y 958 -----------AAATGGAACTGA 969
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