Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00417 and BPUM_0501
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00417___gltP.1.24716.seq
# -bsequence dna-align/BPUM_0501.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00417___gltP-BPUM_0501.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00417___gltP-BPUM_0501.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00417___gltP
# 2: BPUM_0501
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1266
# Identity: 936/1266 (73.9%)
# Similarity: 936/1266 (73.9%)
# Gaps: 36/1266 ( 2.8%)
# Score: 3353.0
#
#
#=======================================
BSNT_00417___ 1 TTGAAAAAATTAATCGCGTTTCAAATTTTAATCGCTTTGGCTG-TCGGCG 49
.|||||||.||..||||.||||||||..|.|||||||||| || |.||.|
BPUM_0501 1 ATGAAAAAGTTCGTCGCTTTTCAAATCATGATCGCTTTGG-TGATAGGAG 49
BSNT_00417___ 50 CGGTGATCGGCCACTTTTTTCCTGATTTCGGGATGGCACTGAGGCCTGTC 99
|..|.|||||.||.||.||||||||.|||||||||||.||.|||||..||
BPUM_0501 50 CTCTTATCGGACATTTCTTTCCTGACTTCGGGATGGCCCTCAGGCCAATC 99
BSNT_00417___ 100 GGAGATGGATTTATCCGCCTGATTAAAATGATTGTTGTGCCGATTGTATT 149
||||||||.||.|||||..|||||||||||||.|||||.||.||.||.||
BPUM_0501 100 GGAGATGGGTTCATCCGATTGATTAAAATGATCGTTGTTCCTATCGTTTT 149
BSNT_00417___ 150 TTCTACCATTGTCATTGGAGCCGCAGGAAGCGGAAGCATGAAAAAAATGG 199
.|||||||||||||||||.||.||.||.||.||..|||||||.||.||||
BPUM_0501 150 CTCTACCATTGTCATTGGTGCAGCTGGCAGTGGTGGCATGAAGAAGATGG 199
BSNT_00417___ 200 GCAGCCTCGGCATCAAGACGATCATTTGGTTCGAAGTGATTACAACGTTG 249
|||||||.||..|.|||||||||||||||||.|||||.||.|||||..|.
BPUM_0501 200 GCAGCCTTGGATTAAAGACGATCATTTGGTTTGAAGTCATCACAACCATC 249
BSNT_00417___ 250 GTATTAGGGCTTGGACTTTTATTAGCGAATGTCTTAAAACCAGGTGTCGG 299
||..||||..||||.||.||..|.||.|||||..||||.||.||.||.||
BPUM_0501 250 GTTCTAGGAATTGGGCTATTGCTGGCTAATGTTCTAAAGCCTGGCGTTGG 299
BSNT_00417___ 300 GCTTGACCTCTCCCATTTGGCAAAAAAAGATATTCATGAACTTTCCGGCT 349
.||.|||.||||..|.||.||.||.|||||||||..||||.|....||||
BPUM_0501 300 CCTCGACTTCTCTAAATTAGCTAAGAAAGATATTGGTGAATTAGATGGCT 349
BSNT_00417___ 350 ACACAGACAAAGTTGTTGATTTCAAGCAAATGGTCCTGGATATTATCCCT 399
|.||..|.|||||.||..|.||.||.||||||||.||.|||||.||.||.
BPUM_0501 350 ATACGCAGAAAGTCGTGAACTTTAAACAAATGGTACTCGATATCATTCCA 399
BSNT_00417___ 400 ACAAACATTATTGATGTCATGGC-CAGAAATGATTTGCTTGCCGTTATTT 448
||.||.|||.|.||||||||||| || |||||||||.|||||.||.||||
BPUM_0501 400 ACGAATATTGTGGATGTCATGGCACA-AAATGATTTACTTGCTGTCATTT 448
BSNT_00417___ 449 TCTTCGCCATTTTATTTGGTGTCGCCGC-AGCTGGTATCGGCAAAGCTTC 497
||||||||||.|||||||||||.||||| ||| ||.|||||.||.||.||
BPUM_0501 449 TCTTCGCCATATTATTTGGTGTAGCCGCAAGC-GGCATCGGTAAGGCATC 497
BSNT_00417___ 498 TGAACCAGTAATGAAGTTTTTTGAATCTACCGCTCAGATTATGTTCAAGC 547
.|..||.||..|.|..||.||||||||....||.||.||||||||.||||
BPUM_0501 498 CGCTCCTGTTCTCACCTTCTTTGAATCAGTGGCACAAATTATGTTTAAGC 547
BSNT_00417___ 548 TCACGCAAATCGTCATGGTCACTGCTCCTATCGGCGTGTTAGCCCTGATG 597
|.|||||.||.||||||||.||.||.|||||.||.|||.|.||..|.|||
BPUM_0501 548 TAACGCAGATGGTCATGGTGACAGCACCTATTGGAGTGCTTGCATTAATG 597
BSNT_00417___ 598 GCAGCTTCTGTGGGCCAATATGGCATTG-------AACTCCTCCTCCCTA 640
||.|||||.||.||.||||||||||||| || ||||.|
BPUM_0501 598 GCTGCTTCCGTTGGTCAATATGGCATTGTGTTATTAA-------TCCCAA 640
BSNT_00417___ 641 TGTTTAAGCTGGTTGGCACCGTATTCCTTGGCCTGTTCCTGATCCTCTTT 690
||.|.|||||.||.||.||.|||||..|.||..|.|||.|.||.||||||
BPUM_0501 641 TGATGAAGCTTGTAGGGACTGTATTTTTAGGATTATTCATCATTCTCTTT 690
BSNT_00417___ 691 GTCCTCTTT----CCGCTTGTCGGTCTCATCTTTCAGATTAAGTATTTCG 736
| |||| ||.||.||||..||.|||||.|...||||.||.||||
BPUM_0501 691 G----CTTTGTTCCCTCTAGTCGCACTGATCTTCCGTTTTAACTACTTCG 736
BSNT_00417___ 737 AAGTATTGAAAATGATATGGGATCTGTTTTTAATTGCATTTTCCACCACC 786
||||.||.|||||||||||||||.||||.||..||||.|||||.||.||.
BPUM_0501 737 AAGTGTTAAAAATGATATGGGATTTGTTCTTGGTTGCCTTTTCTACTACA 786
BSNT_00417___ 787 AGCACTGAAACCATTCTCCCTCAGCTGATGGATAGAATGGAGAAATACGG 836
||.||.|||||..|.||.||||||||.|||....||||||||||||||||
BPUM_0501 787 AGTACAGAAACTGTCCTTCCTCAGCTTATGTCACGAATGGAGAAATACGG 836
BSNT_00417___ 837 CTGTCCCAAACGAGTGGTATCATTTGTCGTTCCCTCCGG-CTTGTCATTG 885
||||||.|||.||.|.||.||.||||||.||||.||.|| ||| ||..|.
BPUM_0501 837 CTGTCCGAAAAGAATTGTCTCCTTTGTCATTCCATCTGGTCTT-TCTCTC 885
BSNT_00417___ 886 AACTGTGACGGCTCCAGCTTATATTTATCGGTTTCTTGTATCTTTCTCGC 935
||.|||||.||.|||||.|||||||||||||||||.|||.|.||.||.||
BPUM_0501 886 AATTGTGATGGGTCCAGTTTATATTTATCGGTTTCCTGTGTGTTCCTTGC 935
BSNT_00417___ 936 ACAGGCCTTTCAAGTAGACATGACATTGTCCCAGCAGCTGCTCATGATGC 985
|||.||.|||...||.|||||||..|||||.||||||||..|.|||||||
BPUM_0501 936 ACAAGCGTTTGGTGTCGACATGAGTTTGTCACAGCAGCTTTTGATGATGC 985
BSNT_00417___ 986 TTGTGCTTGTGATGACCAGTAAAGGCATTGCAGCTGTACCCTCAGGATCG 1035
||||.|||||..|.||.||||||||.||||||||.||.||.||.||.||.
BPUM_0501 986 TTGTTCTTGTATTAACGAGTAAAGGGATTGCAGCGGTGCCATCCGGTTCA 1035
BSNT_00417___ 1036 CTTGTAGTTCTTCTGGCGACTGCCAATGCTGTAGGACTGCCGGCTGAAGG 1085
||.||.||||||.||||.||.||..||||.||.||.||.||.||.|||||
BPUM_0501 1036 CTCGTCGTTCTTTTGGCAACCGCACATGCAGTTGGTCTCCCAGCAGAAGG 1085
BSNT_00417___ 1086 CGTTGCCATTATAGCGGGTGTTGACCGCGTCATGGACATGGCGAGAACGG 1135
||||||||||||.||.|||||.||.||..|.|||||.|||||..||||.|
BPUM_0501 1086 CGTTGCCATTATTGCCGGTGTCGATCGAATTATGGATATGGCACGAACAG 1135
BSNT_00417___ 1136 GCGTGAACGTACCGGGACATGCGATCGCCTGTATCGTGGTATCAAAATGG 1185
|.|||||.||.||.||.|||||..|.||.|||||.||.||||||||||||
BPUM_0501 1136 GTGTGAATGTTCCAGGTCATGCCGTTGCGTGTATTGTCGTATCAAAATGG 1185
BSNT_00417___ 1186 GAAAAGGCCTTCCGCCAAAAAGAATGGG--TTTCCGCAAACAG----CCA 1229
||.||.|..||||||.||...|..|||| .||||..||.||| ..|
BPUM_0501 1186 GAGAAAGTATTCCGCGAATCTGCTTGGGAAGTTCCAAAAGCAGGTGAGGA 1235
BSNT_00417___ 1230 AACTGAAAGCATATAG 1245
|||..||.|.||.||.
BPUM_0501 1236 AACAAAAGGGATGTAA 1251
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