Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00944 and BPUM_0487
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00944___ydfN.1.24716.seq
# -bsequence dna-align/BPUM_0487.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00944___ydfN-BPUM_0487.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00944___ydfN-BPUM_0487.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00944___ydfN
# 2: BPUM_0487
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 435/683 (63.7%)
# Similarity: 435/683 (63.7%)
# Gaps: 88/683 (12.9%)
# Score: 1260.5
#
#
#=======================================
BSNT_00944___ 1 ---------------------------------ATG--GCTGAATTT--A 13
||| .||.|.||| |
BPUM_0487 1 GTGCGAAACAACTTTACGAAAAGGGGAAACAAGATGACACTCAGTTTTGA 50
BSNT_00944___ 14 TACAGTTAGTCAATGAAAGACGATCTGCAAGCAATTTTCTTTCAGGTC-- 61
.||| ||.||...|||.||||||||.|||...||||||.| |.|
BPUM_0487 51 AACA-TTGGTACGTGAGAGACGATCCGCATCAAATTTTTT-----GCCTA 94
BSNT_00944___ 62 --ATC-CAATCACAAAAGAAGACCTCAATGAG-ATGTTTGATTTGGTTGC 107
||| |.||..|.|.||||||.||.|| .|| ||.|||||....||...
BPUM_0487 95 ATATCTCGATTTCGAGAGAAGAGCTTAA-CAGCATATTTGAAGAAGTCAA 143
BSNT_00944___ 108 ATTGGCGCCATCGGCTTTTAATTTGCAGCATACAAAATATGTGGCGGTTC 157
|.||||.|||||.||||||||.||.|||||.|||.||||| |||.
BPUM_0487 144 AATGGCACCATCTGCTTTTAACTTACAGCACACACAATAT------GTTG 187
BSNT_00944___ 158 TTGACCA-------GGACGTAAAGGAAAAGCTGAAGCAG--GCCGCAAAT 198
|.|.||| ||.|.|||||.|.||| .||| || |||||...|
BPUM_0487 188 TCGTCCAAACAGAGGGTCTTAAAGAACAAG--TAAG-AGAAGCCGCTTTT 234
BSNT_00944___ 199 GGACAATATAAAGTGGTTAGCTCTTCTGCGGTTCTCTTGGTATTAGGGGA 248
|||||||||||||||..|..|.|.||.||.|...|..|.|||.| ||||
BPUM_0487 235 GGACAATATAAAGTGCATTCCGCCTCAGCAGCAATTATTGTACT--GGGA 282
BSNT_00944___ 249 TAAGC--AGGCATATCAACAAGCGGCTGATATCTATGAAGGTTTAAAGGT 296
.|..| ||||.|||||.|||||||...|.||||||||||||||.|||.|
BPUM_0487 283 GACCCAAAGGCTTATCAGCAAGCGGGGAACATCTATGAAGGTTTGAAGAT 332
BSNT_00944___ 297 ATTGGGGATATTAAATAAGCAAGAGTATGACCACATGGTGCA-AGACACC 345
..|.||.||.|||||||||||..|.||.||..|.||||| || |||.| |
BPUM_0487 333 GCTTGGCATTTTAAATAAGCAGCAATACGAAGAAATGGT-CAGAGAGA-C 380
BSNT_00944___ 346 GTTTCG-TTTTATGAAAACAGGGGAGAACAATTTAAGAGAGATGAGGCGA 394
|.|..| |||||||||||..|.||||...|.|||.|||.|||.|||||.|
BPUM_0487 381 GATGAGCTTTTATGAAAAGCGAGGAGCGGATTTTCAGAAAGAAGAGGCAA 430
BSNT_00944___ 395 TAAGGAATGCTTCACTTTCTGCGATGATGTTTATGCTGAGTGCTAAGGAA 444
|..|.|||||.|||.|.|||||||||.|.||||||||....||.||..|.
BPUM_0487 431 TTCGCAATGCATCATTATCTGCGATGCTATTTATGCTCGCCGCCAAAAAC 480
BSNT_00944___ 445 AAAGGCTGGGATACCTGCCCGATGATCGGCTTTGATGCGGAAGCCGT-AA 493
||.|||||||||||.|||||.||||||||.|||||..|.||.|.|.| ||
BPUM_0487 481 AAGGGCTGGGATACGTGCCCAATGATCGGTTTTGACCCTGATGTCATGAA 530
BSNT_00944___ 494 AACGGATTTTGAACATAGACGACCAATTTGAGGT---TGTCATGATGATT 540
||.|| |.||||||||.|| |.|..|||| ||| |||..|.|||||.
BPUM_0487 531 AAAGG-TGTTGAACATCGA-GTCGGATTT--GGTTCCTGTGTTAATGATC 576
BSNT_00944___ 541 ACGATTGGAAAAGAAAAAACAGAGAGCAGAAGACCGCGCGGCTACCGGAA 590
||..|.||||||||||||..||||||||||..|.||.|.||||||.|.||
BPUM_0487 577 ACACTCGGAAAAGAAAAAGTAGAGAGCAGACAAGCGAGAGGCTACAGAAA 626
BSNT_00944___ 591 GCCTGTGAATGAGTTTGTTGAGTATA--TGTAA 621
.||.||...|||.||.|| |..||| |.|||
BPUM_0487 627 ACCAGTCTCTGAATTCGT--AACATACTTATAA 657
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