Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03866 and BPUM_0475
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03866___blt.1.24716.seq
# -bsequence dna-align/BPUM_0475___blt.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03866___blt-BPUM_0475___blt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03866___blt-BPUM_0475___blt.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03866___blt
# 2: BPUM_0475___blt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1244
# Identity: 846/1244 (68.0%)
# Similarity: 846/1244 (68.0%)
# Gaps: 88/1244 ( 7.1%)
# Score: 2720.0
#
#
#=======================================
BSNT_03866___ 1 ATGAAAAAATCAATAAATGAGCAAAAAACGATATTCATTATACTATTAAG 50
|||.|||||.|.||...||||||||||.|..|..||.||||..|||||||
BPUM_0475___b 1 ATGCAAAAACCGATTCGTGAGCAAAAAGCTGTTCTCGTTATTTTATTAAG 50
BSNT_03866___ 51 CAACATCTTCGTAGCATTTCTTGGTATCGGTTTAATCATTCCAGTTATGC 100
.|||||.||..|.||.|||.|.||.|||||..|.||||||||.||.||||
BPUM_0475___b 51 TAACATATTTATTGCCTTTTTAGGCATCGGCCTTATCATTCCTGTCATGC 100
BSNT_03866___ 101 CTTCTTTTATGAAAATCATGCATTTATCCGGCAGCACAATGGGTTATCTT 150
|.|..||.|||||..|.||||||.||.|.||.||.||.|||||.||.|||
BPUM_0475___b 101 CGTTATTCATGAATGTGATGCATCTAACGGGAAGTACGATGGGATACCTT 150
BSNT_03866___ 151 GTTGCGGCTTTTGCCATTTCTCAGTTAATTACTTCACCTTTTGCAGGTAG 200
||.|||||.|||||..||.|||||.|.|||.|.||||||.|||||||.||
BPUM_0475___b 151 GTGGCGGCGTTTGCTGTTGCTCAGCTCATTGCATCACCTATTGCAGGGAG 200
BSNT_03866___ 201 GTGGGTTGACCGTTTCGGGAGAAAAAAAATGATTAT-TCTCGGGTTGCTT 249
.|||||.|||||.|.|||.|||||....||||||.| || .||..||.||
BPUM_0475___b 201 ATGGGTAGACCGCTACGGAAGAAAGGTTATGATTGTGTC-AGGACTGTTT 249
BSNT_03866___ 250 ATATTCAGTT----TATCTGAGTTGATTTTCGGATTAGGGACCCATGT-- 293
.||| || ||||.||..|..|.|||||..|.|||||.||.||
BPUM_0475___b 250 CTAT----TTGCGCTATCAGAACTCGTCTTCGGTCTTGGGACACACGTGT 295
BSNT_03866___ 294 ---TTCAATATTTTATTTCTCCAGGA-TATTGGGTGGTATAAGTGCGGCT 339
|.|.|||||| |.||.|| |..|.||.|||||.||||||||.
BPUM_0475___b 296 ATGTGCTATATTT------TGCAAGACTGCTAGGCGGTATTAGTGCGGCA 339
BSNT_03866___ 340 TTTATCATGCCCGCGGTAACAGCATATGTAGCTGATATTACAACCCTAAA 389
|||||.|||||.||.||.||.||.|||||.||.|||||.||.|||.|..|
BPUM_0475___b 340 TTTATTATGCCAGCTGTCACTGCTTATGTCGCAGATATCACGACCGTTCA 389
BSNT_03866___ 390 GGAAAGGTCAAAGGCTATGGGGTATGTTTCTGCTGCAATTAGCACCGGCT 439
.|||||.||||||||.|||||.|||||.||.||.||.|||||.|||||||
BPUM_0475___b 390 AGAAAGATCAAAGGCAATGGGATATGTGTCAGCGGCCATTAGTACCGGCT 439
BSNT_03866___ 440 TTATTATTGGGCCTGGTGCGGGAGGATTTATTGCCGGCTTTGGCATTCGC 489
||||||||||.|||||....||.||||||||.||.|..|..|||.|.||.
BPUM_0475___b 440 TTATTATTGGTCCTGGGATTGGCGGATTTATCGCAGAATACGGCGTACGT 489
BSNT_03866___ 490 ATGCCGTTTTTCTTAACCTCCGCCATCGCGTTAATAGCAGCTGTCACTTC 539
.||||.||.|||||..|..|.|..||.|||||.|| |||.|||| ||.
BPUM_0475___b 490 TTGCCATTCTTCTTTGCAGCAGGGATTGCGTTTAT---AGCCGTCA-TTT 535
BSNT_03866___ 540 CGTTT----TTATACTAAAAGAGTCATTGTCGATAGAAGA-------ACG 578
|||.| ||.|.|||||.|||.||||..|.|.|||||| |.|
BPUM_0475___b 536 CGTCTATGCTTTTGCTAAAGGAGCCATTAACAAAAGAAGAGAGAGCGAAG 585
BSNT_03866___ 579 C-----CATCAACTCTCTTCTCATACAAAGGAATCAAATTTCATTAAAGA 623
| .|||||.| .||||||||.|..|||.|||||||
BPUM_0475___b 586 CAGATGGATCAAGT------------GAAGGAATCGACCTTCTTTAAAGA 623
BSNT_03866___ 624 CTTGAAGAGATCCATTCATCCTGTCTATTTGATTGCATTTATTATCGTCT 673
.|||||.|||||.||||||||...||||.|.||.||.||||||||.||.|
BPUM_0475___b 624 TTTGAAAAGATCGATTCATCCAAGCTATCTCATCGCTTTTATTATTGTGT 673
BSNT_03866___ 674 TTGTGATGGCTTTTGGTTTATCAGCTTATGAAACGGTATTCAGCTTGTTT 723
||||..|.||.|||||..|.||.||.||||||||||||||.||..|||||
BPUM_0475___b 674 TTGTTCTCGCATTTGGACTGTCTGCATATGAAACGGTATTTAGTCTGTTT 723
BSNT_03866___ 724 TCTGATCATAAATTTGGCTTCACACCAAAAGATATTGCAGCCATTATCAC 773
.|..|||||||.|||||.||....||||||||||||||.|..|||||.||
BPUM_0475___b 724 ACAAATCATAAGTTTGGATTTGGTCCAAAAGATATTGCGGTGATTATTAC 773
BSNT_03866___ 774 GATTAGTTCCATTGTTGCGGTAGTTATTCAAGTTTTACTATTCGGGAAAT 823
|.|.||.||.|||||.||.||..|.||.|||||..|..|.||.||||||.
BPUM_0475___b 774 GGTCAGCTCGATTGTGGCTGTTATCATCCAAGTGCTGGTGTTTGGGAAAC 823
BSNT_03866___ 824 TGGTCGACAAA----CTTGGAGAGAAAAGAATGATTCAGCTGTGCTTAAT 869
|.|| ||| |||||.||.||||||.|.||||||||.|||||.||
BPUM_0475___b 824 TCGT----AAATGCCCTTGGGGAAAAAAGAGTCATTCAGCTTTGCTTGAT 869
BSNT_03866___ 870 AATTGGTGCGATCTTAGCTTTCGTGTCTACTGTTATGTCAGGATTTTTAA 919
..||||.|||.|..|.|||||.||.||.|||||..|.|||||.|||.|..
BPUM_0475___b 870 CGTTGGAGCGGTGCTCGCTTTTGTTTCAACTGTCGTCTCAGGCTTTATGG 919
BSNT_03866___ 920 CTGTTTTGCTTGTAACTTGTTTTATTTTTCTGGCGTTCGATTTGCTACGT 969
..||..||.||||.||.|||.|.|||||..|.||.||.|||||..|.|||
BPUM_0475___b 920 TAGTCCTGATTGTCACATGTGTCATTTTCTTAGCCTTTGATTTATTGCGT 969
BSNT_03866___ 970 CCCGCCTTAACCGCTCATTTATCCAATATCGCCGGTAACCAGCAGGGTTT 1019
||.||.|||||..|...||||||.||.|||||.||.||.|||||.|||||
BPUM_0475___b 970 CCAGCATTAACGACCTTTTTATCAAAAATCGCTGGCAATCAGCAAGGTTT 1019
BSNT_03866___ 1020 CGTAGCAGGCATGAACTCCACATATACCAGCCTGGGAAATATATTTGGAC 1069
.||.|||||.||||||||.||.||.||.|||||.||.|..||.|||||.|
BPUM_0475___b 1020 TGTCGCAGGGATGAACTCTACCTACACAAGCCTTGGTACGATTTTTGGCC 1069
BSNT_03866___ 1070 CTGCTCTAGGCGGTATACTATTTGATCTTAACATTCATTATCCTTTCCTT 1119
|.||.||.|||||.||..||||.||||..||.||.||.|..||.||.||.
BPUM_0475___b 1070 CAGCCCTTGGCGGAATTTTATTCGATCAAAATATACACTTCCCATTTCTA 1119
BSNT_03866___ 1120 TTTGCAGGTTTCG--TTATGGTTGTCGGCCTT--GGT-----CTTACAAT 1160
||.||||||.|.| |||| ||.|||| .|| ||| ||||
BPUM_0475___b 1120 TTCGCAGGTGTTGTCTTAT--TTCTCGG-ATTAGGGTTAACCCTTA---- 1162
BSNT_03866___ 1161 GGTTTGGAA-AGAAAAAAAGAATGATGCTGCAGCTTTGAATTAA 1203
||||||| .|.||...|||| ||..||||.||.| ||
BPUM_0475___b 1163 --TTTGGAAGGGGAAGGCAGAA-GAGCCTGCGGCAT--AA---- 1197
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