Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03916 and BPUM_0461
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03916___adhA.1.24716.seq
# -bsequence dna-align/BPUM_0461___adhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03916___adhA-BPUM_0461___adhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03916___adhA-BPUM_0461___adhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03916___adhA
# 2: BPUM_0461___adhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 763/1072 (71.2%)
# Similarity: 763/1072 (71.2%)
# Gaps: 44/1072 ( 4.1%)
# Score: 2552.5
#
#
#=======================================
BSNT_03916___ 1 ATGTGT---AATCAAC-ATCAAACCCGTGTATTAAGCGTGTCACATGCAA 46
|||||| |..||.| ||||||| ||.|||||.||.||||||||||
BPUM_0461___a 1 ATGTGTCAGACGCACCAATCAAAC----GTTTTAAGTGTTTCACATGCAA 46
BSNT_03916___ 47 AAGCCAAATTTGAACAAACGACGATTGAGCGAAGAG-GATTACGGCCGCA 95
||||.||.|||||||..||.||.|||||.||||||| |.|| ||.||.||
BPUM_0461___a 47 AAGCGAATTTTGAACGGACAACCATTGAACGAAGAGCGCTT-CGTCCACA 95
BSNT_03916___ 96 CGATGTCTTAATCGATATTAAATTCAGCGGTATTTGCCATTCAGACATTC 145
.|||.|.|||||.||||||.||||.|||||.||.||.||||||||.||.|
BPUM_0461___a 96 TGATATTTTAATTGATATTCAATTTAGCGGGATCTGTCATTCAGATATCC 145
BSNT_03916___ 146 ATAGTGCTTTTGATGAATGGGGCGGTGGCATCTTCCCAATGGTGCCAGGA 195
|.||.||.|||||||||||||||||.||.||.|||||||||||.||.||.
BPUM_0461___a 146 ACAGCGCCTTTGATGAATGGGGCGGCGGTATTTTCCCAATGGTTCCGGGT 195
BSNT_03916___ 196 CATGAAATAGCCGGTGTCGTAACAGCCGTTGGAGCAGAAGTCACCAAATT 245
|||||.||..|.||.||.||..|.||.||.||.|..||.||.||.||.||
BPUM_0461___a 196 CATGAGATTACTGGAGTTGTTTCGGCTGTCGGTGATGATGTGACGAAGTT 245
BSNT_03916___ 246 TGCTG-TCGGGGACCGCGTTGGTGTCGGCTGTTTTGTTGACTCATGCGGA 294
| |.| |.||.|||||.||.||.||.||.||.|||||.||.||.|||||.
BPUM_0461___a 246 T-CAGATTGGAGACCGTGTAGGCGTTGGTTGCTTTGTGGATTCCTGCGGC 294
BSNT_03916___ 295 GAATGCGAATACTGTCTAAACGGAGAGGAACAGTTCTGCACGAAGGGTGT 344
...||.|||||.||.|.|||.|||||.||.||.|..||.|||||.||.||
BPUM_0461___a 295 ACCTGTGAATATTGCCAAAATGGAGACGAGCAATATTGTACGAAAGGAGT 344
BSNT_03916___ 345 TGTTCAAACGTATAACTCAG--TAGACTACGACGGAAACCCCACTTATGG 392
.||.|||||.||||| .|| |.||.||.|||||..|.||.||||||||
BPUM_0461___a 345 CGTCCAAACCTATAA--TAGCATTGATTATGACGGGGAACCAACTTATGG 392
BSNT_03916___ 393 CGGGTACAGCCAAAAAATCGTTGTCACTGACAGA----TTTGTTGTTCGA 438
|||.||.||.||.||.||.||.| ||||||| |||||.||..|.
BPUM_0461___a 393 CGGCTATAGTCAGAAGATTGTCG----TGACAGAGCGTTTTGTCGTCAGC 438
BSNT_03916___ 439 ATCCCAGATCGTTTGGAAA-------TGGATGTTGCCAGTCCGCTGTTGT 481
||.||||||| || |.||||..||.|||||.||..|.|
BPUM_0461___a 439 ATTCCAGATC-------AACTATCCCTTGATGCCGCAAGTCCTCTCCTCT 481
BSNT_03916___ 482 GTGCAGGTATCACAACATATTCTCCGCTGAAACACTGGAATGTTGGCCCG 531
|.||.||.||.||.||.||||||||..|.||.||||||||.|..||||||
BPUM_0461___a 482 GCGCTGGCATTACCACTTATTCTCCATTAAAGCACTGGAAGGCAGGCCCG 531
BSNT_03916___ 532 GGTAAAAAAGTTGCGATTGTAGGCGTGGGTGGCCTTGGACATTTGGCGAT 581
|||||||||||.||.||.||.||..|||||||.||.||.|||.|.||.||
BPUM_0461___a 532 GGTAAAAAAGTCGCCATCGTCGGGATGGGTGGGCTCGGTCATGTAGCCAT 581
BSNT_03916___ 582 TCAATTTGCACATGCGATGGGTGCAGAGGTAACCGTCCTGAGCCGTTCCA 631
||||||.||||.|||..|.||.||.||.||.||.||..|.|||||.||.|
BPUM_0461___a 582 TCAATTCGCACGTGCACTTGGCGCTGAAGTCACGGTATTAAGCCGCTCGA 631
BSNT_03916___ 632 TGAATAAGAAAGAGGAAGCTCTGGAACTCGGTGCAAATCATTACTTTGCA 681
|||||||.|||||.||.||.|||..|.|.||||||||..|.||.|||||.
BPUM_0461___a 632 TGAATAAAAAAGAAGAGGCACTGTCATTTGGTGCAAAAAACTATTTTGCT 681
BSNT_03916___ 682 ACAAGTGACCCAGCCACATTCACTGCATTGGCCGGGCGTTTTGACGTGAT 731
||||||||.||.|..|||||.|...||||.|||||.|..|..|||.|.||
BPUM_0461___a 682 ACAAGTGATCCCGATACATTTAAAACATTAGCCGGTCAATACGACCTCAT 731
BSNT_03916___ 732 CTTAAATACGGTATCGGCAAATCTCGATGTAGATGCCTATTTATCAATGC 781
..|.|||||.||.||.||.|||.||.|||||||.||||||||.||..|.|
BPUM_0461___a 732 TCTCAATACAGTCTCTGCCAATATCAATGTAGACGCCTATTTGTCCTTAC 781
BSNT_03916___ 782 TTCGTATAGACGGGACACTT-GTAAACGTTGGAGCTCCTGCC-AAGCCGG 829
||||..|.||.||.|| ||| ||.||.||.||.||.|| ||| ||.||.|
BPUM_0461___a 782 TTCGCGTGGATGGAAC-CTTAGTGAATGTCGGTGCACC-GCCTAATCCAG 829
BSNT_03916___ 830 A-CACATACAGTGTGTTTTCCCTAATCATGGGGCGCCGCAGCATTGCAGG 878
| || ||.|...||.|||||..||||....||.|||||||||||||||||
BPUM_0461___a 830 ATCA-ATTCCACGTCTTTTCATTAATTTCCGGCCGCCGCAGCATTGCAGG 878
BSNT_03916___ 879 TTCTCTAGTCGGCGGAATTCAAGAAACTCAAGAGATGCTGGATTTCGCAG 928
|||.||.||.|||||.||.||||||||.|||||.|||||.||||||||||
BPUM_0461___a 879 TTCACTCGTTGGCGGCATCCAAGAAACACAAGAAATGCTCGATTTCGCAG 928
BSNT_03916___ 929 CTGAGCATGGCATCGAACCTAAAATCGAAGTCATCGGAGCTGACCAAGTG 978
|||..||....||||.|||..||||.|||||.|||...||..|.|||.|.
BPUM_0461___a 929 CTGCTCACAAGATCGCACCACAAATTGAAGTAATCAACGCAAATCAAATT 978
BSNT_03916___ 979 GACGAAGCATACGAACGTATCCTCCGAAGCGATGTCCGCTATCGATTTGT 1028
||.|||||.||.||||||.|.||...|||.|||||.|..|||||.|||||
BPUM_0461___a 979 GATGAAGCGTATGAACGTGTGCTGAAAAGTGATGTGCTTTATCGGTTTGT 1028
BSNT_03916___ 1029 GATTGATATTTCCACATTGTAA 1050
|||||||||.||.|||||.|.|
BPUM_0461___a 1029 GATTGATATCTCAACATTATGA 1050
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