Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01351 and BPUM_0455
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01351___acoR.1.24716.seq
# -bsequence dna-align/BPUM_0455___acoR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01351___acoR-BPUM_0455___acoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01351___acoR-BPUM_0455___acoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01351___acoR
# 2: BPUM_0455___acoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity: 1197/2038 (58.7%)
# Similarity: 1197/2038 (58.7%)
# Gaps: 410/2038 (20.1%)
# Score: 3001.5
#
#
#=======================================
BSNT_01351___ 1 ATGAATTCG-------GTCCCAAACGATTTGCAAACCTGGAAACGTTTT- 42
||||||.|| || .||||..|.||.||||||||||||
BPUM_0455___a 1 ATGAATCCGCCGCCTTGT-------TATTTAAATACGTGGAAACGTTTTG 43
BSNT_01351___ 43 ---GTGAAAGACGGTGTGCTTGACGA----AGCCCGATTAAGAAAACGGA 85
||||| |||.|||||||..| .|.|.||.||||| ||
BPUM_0455___a 44 TTCGTGAA----GGTTTGCTTGATCAGTCTCGTCTGAATAAGA-----GA 84
BSNT_01351___ 86 -TTGCAGAGTCATGGCATCGCTGCAAAAAAGCTGAGGTCAATCCTTATTT 134
|.|||||.||||||||..|.||.|||.|.||..|.||.|||||.|||||
BPUM_0455___a 85 GTGGCAGAATCATGGCACAGGTGTAAACAGGCAAATGTGAATCCGTATTT 134
BSNT_01351___ 135 AGAAAAAGGCCCGAAGGTTTTACAGCAAACGGAGCTGGATCA-GCAGT-- 181
|||.|||||.|.|..|.|.||| .|||.||| ||.| .||||
BPUM_0455___a 135 AGATAAAGGACAGTCGTTGTTA---GAAAAGGA-----ATTATTCAGTGC 176
BSNT_01351___ 182 -CAAAA----AAACATTCATTCTTCTTGACGACCGCAAAGCCTTACCTCG 226
||||| |||.|||||||.|||.|.|...|.||....||||||.|..
BPUM_0455___a 177 CCAAAAAAAGAAATATTCATTATTCCTAAATGCGGCTCTTCCTTACTTAA 226
BSNT_01351___ 227 AAAAACTGCTGCCTGCCA-TAAAAGAAATGGAAATGATGGCGCTGTTAAT 275
|.|||.| |.|.|.||.| ||||||||...||.|||.||||..|..|.||
BPUM_0455___a 227 ATAAAAT-CAGTCAGCAATTAAAAGAATCTGACATGTTGGCCTTACTCAT 275
BSNT_01351___ 276 TGATTCAGACGGTGTTGT------TTTGGCATTGGACGGCCATTCCCGCG 319
.|||.||||||||..||| |.||||| |||.| ||..
BPUM_0455___a 276 CGATGCAGACGGTTATGTGCTAAGTCTGGCA--GGAAG--------CGAA 315
BSNT_01351___ 320 CGCTCTAT----GAAGCCAAACGCATCAACTTTGTCGAAGGGGCATGCTG 365
.|..|.|| |||||.|.|.|.||.||.|||.|.||.||..|..||||
BPUM_0455___a 316 AGAACGATGGTGGAAGCAAGAAGAATTAATTTTATGGAGGGTTCGCGCTG 365
BSNT_01351___ 366 GACGGAAACGGCTGTCGGAACAAATGCGATTGGCACGGCACTCCACATTA 415
|||.|||||||.|||.||.|||||||||||.||.|||||||||..|||..
BPUM_0455___a 366 GACCGAAACGGATGTAGGGACAAATGCGATCGGAACGGCACTCGTCATCG 415
BSNT_01351___ 416 GCGAGCCGGTTGCGATACAA-GGATCAGAGCATTACTCCATTGCTTCCCA 464
|.||..||||..|||| ||| |||.|.|||||||..||.|||||.||.||
BPUM_0455___a 416 GAGAAGCGGTGACGAT-CAACGGAACGGAGCATTTTTCTATTGCCTCTCA 464
BSNT_01351___ 465 TCTTTGGAACTGTTCAGCCGCTCCGATTCACCATGAGGATGG--CAGCCT 512
||.|||||..||||||||.|||||.||||...|||..||.|| ||..|.
BPUM_0455___a 465 TCATTGGAGTTGTTCAGCTGCTCCAATTCGTGATGCAGACGGTACAATCA 514
BSNT_01351___ 513 TGCGGGTGTGATTGACATATCGTGTCCGGCGG----CAGGCGCTCATCCT 558
| .||.|||||||||||.||.|||..|.||| ||.| ||.|||
BPUM_0455___a 515 T--AGGGGTGATTGACATCTCCTGTATGACGGATAACAAG----CACCCT 558
BSNT_01351___ 559 CATATGCTCGGTATTGCCACTGCGATCGCCTATGCAGCTGAACGGG---- 604
..||||||.||.||.||..|..||.|.||.||||| .|.||.|
BPUM_0455___a 559 TTTATGCTTGGAATGGCTTCAACGGTTGCTTATGC----CATCGAGAGAG 604
BSNT_01351___ 605 ------AACTCGCAGC-TAAAAGCCGTGAGAAAGAGCTCGAGCTGATCAG 647
||.|| |||| .||||| |.|||||| |.||||||||||.
BPUM_0455___a 605 ACATTCAAGTC-CAGCAAAAAAG--GAGAGAAA----TGGAGCTGATCAC 647
BSNT_01351___ 648 CCGTTTTGGAGAGAGGGCTGCATCCAGTGTG------------CCG-ATG 684
.|.|| |.||.|| .||| ||| ||| ||
BPUM_0455___a 648 TCATT----------GTCTCCA-GCAG-GTGGAAGCAGGCAAACCGTAT- 684
BSNT_01351___ 685 GTGCTATGCAATACCAAGCAGCACATCATCAGTGCGAGCATACCGATTCG 734
|||.|.||.|||...||..||||.||..|...|||.||||...|||||.|
BPUM_0455___a 685 GTGGTCTGTAATGAAAAAAAGCAAATTGTTTCTGCCAGCAGGTCGATTAG 734
BSNT_01351___ 735 A-ACCTCAATACCGGATTGGCAGGGCCGGCACCTGTATG----------- 772
| ||| ||||..||| ||..|||||
BPUM_0455___a 735 AGACC---------GATTTTCAG-------ACTGGTATGGAATGGATGTC 768
BSNT_01351___ 773 ----AGCTGAAGGAACGGGGCTACTCA------ATC--GAAAAAGCTG-T 809
.|||.|||||.| |.||| ||| |..|||||.| |
BPUM_0455___a 769 GAGCGGCTTAAGGATC------ATTCATTTGTTATCCGGGGAAAGCAGAT 812
BSNT_01351___ 810 CA--CCATAGGAG-ATGGCGGCA-----CTTGTT------TTTATCTTTC 845
|| |.||..||| |.|.|||.| ||.|.| |||..||||
BPUM_0455___a 813 CATTCGATCAGAGCAAGACGGGAAGGTGCTAGGTATATCCTTTTCCTTT- 861
BSNT_01351___ 846 GGAACA---AAAGAAAAAGAAGGT----GTTTCGAT----TCAAT----- 879
|||.| |..||||||..|..| ||||| || |||||
BPUM_0455___a 862 -GAAGAAGCAGCGAAAAATGACATCACCGTTTC-ATTTGCTCAATTTCCC 909
BSNT_01351___ 880 --GGAGTGATCGGGCA-AAG--CGGCCGATCGCAAGCGATGCT------G 918
||| |||.||.| ||| .|| .||..|||..||..|| |
BPUM_0455___a 910 GGGGA---ATCAGGAACAAGTAAGG--TATTTCAACAGACACTTAGTCAG 954
BSNT_01351___ 919 ATGAACCTTGAACGTGCAGCTGC---GGCAGATGCAACGGTC-------T 958
||||| ||| |||.|| ..||||||| || |
BPUM_0455___a 955 ATGAA----GAA-----AGCGGCACAAACAGATGC-----TCATGTATAT 990
BSNT_01351___ 959 GTTTGTCGGGCGAAACTGGTACGGGAAAGGAAGTCGCGGCTCGCGCGCTT 1008
.|||| |||.|||||.||.||.||.||||||.|.||.|||.|.||..||
BPUM_0455___a 991 ATTTG--GGGAGAAACAGGGACAGGGAAGGAACTTGCCGCTAGAGCCATT 1038
BSNT_01351___ 1009 CA-TGAGAACAGTGAGAGACGGCACGGTCCGTTTATTGCTGTCAATTGCG 1057
|| |..| .||||||.||.|...|.||.||||||||||||||.|||||||
BPUM_0455___a 1039 CACTCCG-CCAGTGAAAGGCATAAAGGGCCGTTTATTGCTGTTAATTGCG 1087
BSNT_01351___ 1058 GAGCGATTCCGTCTGA---TTTGATTGAAAGCGAACTATTCGGATATGCA 1104
||||.|||| |||| ..||.|.|||||.||.||.||.||.||||..
BPUM_0455___a 1088 GAGCCATTC---CTGAAAGCCTGTTAGAAAGTGAGCTGTTTGGCTATGTT 1134
BSNT_01351___ 1105 GAGGGCGCTTTTACGGGAGCGAAACGAAATGGCTATAAAGGCGCCTTTCA 1154
||.||.||||||||.||.||||||||..|.||...||||||....|||.|
BPUM_0455___a 1135 GAAGGGGCTTTTACAGGGGCGAAACGTCACGGAGCTAAAGGGAAATTTGA 1184
BSNT_01351___ 1155 AAAAGCGAATCAAGGCACATTATTTTTAGATGAAATCGGAGAAATTTCCC 1204
|.||||..||.||||.||..|.|||.||||||||||.||.|||| ||||
BPUM_0455___a 1185 ACAAGCCCATAAAGGAACGCTCTTTCTAGATGAAATAGGTGAAA--TCCC 1232
BSNT_01351___ 1205 ACT---CGATGCAGGTTGCGCTTTTACGGGTGCTTCAGGAA--------C 1243
| | |||||||.||.||||||.|.||||||.|..|.||| |
BPUM_0455___a 1233 A-TATGCGATGCAAGTAGCGCTTCTTCGGGTGATAGAAGAAAGGGCAGTC 1281
BSNT_01351___ 1244 GCAAGATAACGCCAATCGGCGGGACGAAAGAAATTCCGGTTGATA-TCAG 1292
| ||.||| ||||||||||..|.|||||.||..|.|||| ||.|
BPUM_0455___a 1282 G-----TACCGC---TCGGCGGGACACACGAAATCCCTTTGGATATTCGG 1323
BSNT_01351___ 1293 AGTTATTGCCGCCACACATTGTGATTTACGCGAGC--TTGCCGAAAACGG 1340
| ||||..|.||.||.||..||.||.|.|.|||.| |||..|.|| ||
BPUM_0455___a 1324 A-TTATCACAGCGACTCACCGTAATATGCACGAACTATTGAAGGAA--GG 1370
BSNT_01351___ 1341 AAAAATCAGAGAGGACTTGTTTTACCGTCTTCATGTCTATCCAATTGAAC 1390
||||||..||||||||||||.|||.|||||||||||||||||.| |.|||
BPUM_0455___a 1371 AAAAATACGAGAGGACTTGTATTATCGTCTTCATGTCTATCCGA-TCAAC 1419
BSNT_01351___ 1391 -TCCCTCC-ATTACGCGATCGCACCGAGGATATCCCGG----ACCTCTTT 1434
||||.|| .||| |.||..|.|..||.||.||.|..| |..||.||
BPUM_0455___a 1420 ATCCCGCCGCTTA-GAGAAAGAAAAGAAGACATTCATGATTTATATCGTT 1468
BSNT_01351___ 1435 GAGCACTACAAACAGAAGAATCATTGG---CCAGGCGAACTTCCT---TC 1478
|.|||.||.|.|||.|.||.||| .|| ||| .||||| ||
BPUM_0455___a 1469 ----ATTACCAAAAAAAGCACCACTGGAATGCA-GCG--TTTCCTGAATC 1511
BSNT_01351___ 1479 TGATTTTT---GTAATGTGCTGAAGCAATGGAAGTGGCCGGGGAATATCC 1525
|||||| |.||| ||.||.|.|...|.|||||.||.||.||.|
BPUM_0455___a 1512 --ATTTTTTCAGAAAT----TGCAGGAGTATCACTGGCCAGGTAACATAC 1555
BSNT_01351___ 1526 GTGAGCTGTTTAATGTGTTTGAACGTCT-----TTCTATCAGATTTCCGG 1570
|.|||||.|||||..|||||||||.|.| |||| .||||||.
BPUM_0455___a 1556 GAGAGCTTTTTAACCTGTTTGAACATTTAAGGGTTCT-----CTTTCCGA 1600
BSNT_01351___ 1571 ACGGCCGGCT-GAGGGA----TGAACCGCTACCCGCTT---TACTGGAAG 1612
|.|| | ||.||| ||||.|||.|...|||| ||.|.| ||
BPUM_0455___a 1601 ATGG-----TGGATGGATTGGTGAATCGCAATATGCTTCAGTATTAG-AG 1644
BSNT_01351___ 1613 CCGCTGGATTGCCGGCCAGCTCTGCAGAAAAAAAGCCG--GCT---GCTG 1657
.||.|.||| .|.|||||||.| ||| .||.
BPUM_0455___a 1645 TCGATTGAT-----------------CATAAAAAGCAGAAGCTTCATCTA 1677
BSNT_01351___ 1658 CCGGCGT-------------------GCTTACCTTTCGTGAGCAAATCCA 1688
.|||.|| .||.||.||..|.||.|..||.||
BPUM_0455___a 1678 GCGGAGTATACGAAGACTCCAAAAGAACTCACATTCAGGGAACGTATTCA 1727
BSNT_01351___ 1689 AAAGGATATGATGATCAAAGCGCTTGAATCAGCAAAAGGAAACGTC---- 1734
||||.|.|...||.|..|.||.| ||.|| ||||.||||.|||
BPUM_0455___a 1728 AAAGCAAACAGTGGTAGACGCAC-TGCAT----AAAACGAAAGGTCATGT 1772
BSNT_01351___ 1735 -TCTCAAGCCGCAA--AAATCAGCGGGA-TCCCCCGAAGCACTTTCTACA 1780
||..||||.||.| ..|||| ||| |.||..||||.|||||.||.|
BPUM_0455___a 1773 GTCAGAAGCAGCGAGGCTATCA---GGAGTGCCAAGAAGTACTTTTTATA 1819
BSNT_01351___ 1781 AACGCCTGAAAAAATTCAACTTGTCCGCTGAATCATAA 1818
|..|..|||.|||.|| ||..||| ||.|||
BPUM_0455___a 1820 AGTGGATGAGAAAGTT-------TCATCTG--TCTTAA 1848
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