Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01351 and BPUM_0455

See Amino acid alignment / Visit BSNT_01351 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:57
# Commandline: needle
#    -asequence dna-align/BSNT_01351___acoR.1.24716.seq
#    -bsequence dna-align/BPUM_0455___acoR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01351___acoR-BPUM_0455___acoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01351___acoR-BPUM_0455___acoR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01351___acoR
# 2: BPUM_0455___acoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2038
# Identity:    1197/2038 (58.7%)
# Similarity:  1197/2038 (58.7%)
# Gaps:         410/2038 (20.1%)
# Score: 3001.5
# 
#
#=======================================

BSNT_01351___      1 ATGAATTCG-------GTCCCAAACGATTTGCAAACCTGGAAACGTTTT-     42
                     ||||||.||       ||       .||||..|.||.|||||||||||| 
BPUM_0455___a      1 ATGAATCCGCCGCCTTGT-------TATTTAAATACGTGGAAACGTTTTG     43

BSNT_01351___     43 ---GTGAAAGACGGTGTGCTTGACGA----AGCCCGATTAAGAAAACGGA     85
                        |||||    |||.|||||||..|    .|.|.||.|||||     ||
BPUM_0455___a     44 TTCGTGAA----GGTTTGCTTGATCAGTCTCGTCTGAATAAGA-----GA     84

BSNT_01351___     86 -TTGCAGAGTCATGGCATCGCTGCAAAAAAGCTGAGGTCAATCCTTATTT    134
                      |.|||||.||||||||..|.||.|||.|.||..|.||.|||||.|||||
BPUM_0455___a     85 GTGGCAGAATCATGGCACAGGTGTAAACAGGCAAATGTGAATCCGTATTT    134

BSNT_01351___    135 AGAAAAAGGCCCGAAGGTTTTACAGCAAACGGAGCTGGATCA-GCAGT--    181
                     |||.|||||.|.|..|.|.|||   .|||.|||     ||.| .||||  
BPUM_0455___a    135 AGATAAAGGACAGTCGTTGTTA---GAAAAGGA-----ATTATTCAGTGC    176

BSNT_01351___    182 -CAAAA----AAACATTCATTCTTCTTGACGACCGCAAAGCCTTACCTCG    226
                      |||||    |||.|||||||.|||.|.|...|.||....||||||.|..
BPUM_0455___a    177 CCAAAAAAAGAAATATTCATTATTCCTAAATGCGGCTCTTCCTTACTTAA    226

BSNT_01351___    227 AAAAACTGCTGCCTGCCA-TAAAAGAAATGGAAATGATGGCGCTGTTAAT    275
                     |.|||.| |.|.|.||.| ||||||||...||.|||.||||..|..|.||
BPUM_0455___a    227 ATAAAAT-CAGTCAGCAATTAAAAGAATCTGACATGTTGGCCTTACTCAT    275

BSNT_01351___    276 TGATTCAGACGGTGTTGT------TTTGGCATTGGACGGCCATTCCCGCG    319
                     .|||.||||||||..|||      |.|||||  |||.|        ||..
BPUM_0455___a    276 CGATGCAGACGGTTATGTGCTAAGTCTGGCA--GGAAG--------CGAA    315

BSNT_01351___    320 CGCTCTAT----GAAGCCAAACGCATCAACTTTGTCGAAGGGGCATGCTG    365
                     .|..|.||    |||||.|.|.|.||.||.|||.|.||.||..|..||||
BPUM_0455___a    316 AGAACGATGGTGGAAGCAAGAAGAATTAATTTTATGGAGGGTTCGCGCTG    365

BSNT_01351___    366 GACGGAAACGGCTGTCGGAACAAATGCGATTGGCACGGCACTCCACATTA    415
                     |||.|||||||.|||.||.|||||||||||.||.|||||||||..|||..
BPUM_0455___a    366 GACCGAAACGGATGTAGGGACAAATGCGATCGGAACGGCACTCGTCATCG    415

BSNT_01351___    416 GCGAGCCGGTTGCGATACAA-GGATCAGAGCATTACTCCATTGCTTCCCA    464
                     |.||..||||..|||| ||| |||.|.|||||||..||.|||||.||.||
BPUM_0455___a    416 GAGAAGCGGTGACGAT-CAACGGAACGGAGCATTTTTCTATTGCCTCTCA    464

BSNT_01351___    465 TCTTTGGAACTGTTCAGCCGCTCCGATTCACCATGAGGATGG--CAGCCT    512
                     ||.|||||..||||||||.|||||.||||...|||..||.||  ||..|.
BPUM_0455___a    465 TCATTGGAGTTGTTCAGCTGCTCCAATTCGTGATGCAGACGGTACAATCA    514

BSNT_01351___    513 TGCGGGTGTGATTGACATATCGTGTCCGGCGG----CAGGCGCTCATCCT    558
                     |  .||.|||||||||||.||.|||..|.|||    ||.|    ||.|||
BPUM_0455___a    515 T--AGGGGTGATTGACATCTCCTGTATGACGGATAACAAG----CACCCT    558

BSNT_01351___    559 CATATGCTCGGTATTGCCACTGCGATCGCCTATGCAGCTGAACGGG----    604
                     ..||||||.||.||.||..|..||.|.||.|||||    .|.||.|    
BPUM_0455___a    559 TTTATGCTTGGAATGGCTTCAACGGTTGCTTATGC----CATCGAGAGAG    604

BSNT_01351___    605 ------AACTCGCAGC-TAAAAGCCGTGAGAAAGAGCTCGAGCTGATCAG    647
                           ||.|| |||| .|||||  |.||||||    |.||||||||||.
BPUM_0455___a    605 ACATTCAAGTC-CAGCAAAAAAG--GAGAGAAA----TGGAGCTGATCAC    647

BSNT_01351___    648 CCGTTTTGGAGAGAGGGCTGCATCCAGTGTG------------CCG-ATG    684
                     .|.||          |.||.|| .||| |||            ||| || 
BPUM_0455___a    648 TCATT----------GTCTCCA-GCAG-GTGGAAGCAGGCAAACCGTAT-    684

BSNT_01351___    685 GTGCTATGCAATACCAAGCAGCACATCATCAGTGCGAGCATACCGATTCG    734
                     |||.|.||.|||...||..||||.||..|...|||.||||...|||||.|
BPUM_0455___a    685 GTGGTCTGTAATGAAAAAAAGCAAATTGTTTCTGCCAGCAGGTCGATTAG    734

BSNT_01351___    735 A-ACCTCAATACCGGATTGGCAGGGCCGGCACCTGTATG-----------    772
                     | |||         ||||..|||       ||..|||||           
BPUM_0455___a    735 AGACC---------GATTTTCAG-------ACTGGTATGGAATGGATGTC    768

BSNT_01351___    773 ----AGCTGAAGGAACGGGGCTACTCA------ATC--GAAAAAGCTG-T    809
                         .|||.|||||.|      |.|||      |||  |..|||||.| |
BPUM_0455___a    769 GAGCGGCTTAAGGATC------ATTCATTTGTTATCCGGGGAAAGCAGAT    812

BSNT_01351___    810 CA--CCATAGGAG-ATGGCGGCA-----CTTGTT------TTTATCTTTC    845
                     ||  |.||..||| |.|.|||.|     ||.|.|      |||..|||| 
BPUM_0455___a    813 CATTCGATCAGAGCAAGACGGGAAGGTGCTAGGTATATCCTTTTCCTTT-    861

BSNT_01351___    846 GGAACA---AAAGAAAAAGAAGGT----GTTTCGAT----TCAAT-----    879
                      |||.|   |..||||||..|..|    ||||| ||    |||||     
BPUM_0455___a    862 -GAAGAAGCAGCGAAAAATGACATCACCGTTTC-ATTTGCTCAATTTCCC    909

BSNT_01351___    880 --GGAGTGATCGGGCA-AAG--CGGCCGATCGCAAGCGATGCT------G    918
                       |||   |||.||.| |||  .||  .||..|||..||..||      |
BPUM_0455___a    910 GGGGA---ATCAGGAACAAGTAAGG--TATTTCAACAGACACTTAGTCAG    954

BSNT_01351___    919 ATGAACCTTGAACGTGCAGCTGC---GGCAGATGCAACGGTC-------T    958
                     |||||    |||     |||.||   ..|||||||     ||       |
BPUM_0455___a    955 ATGAA----GAA-----AGCGGCACAAACAGATGC-----TCATGTATAT    990

BSNT_01351___    959 GTTTGTCGGGCGAAACTGGTACGGGAAAGGAAGTCGCGGCTCGCGCGCTT   1008
                     .||||  |||.|||||.||.||.||.||||||.|.||.|||.|.||..||
BPUM_0455___a    991 ATTTG--GGGAGAAACAGGGACAGGGAAGGAACTTGCCGCTAGAGCCATT   1038

BSNT_01351___   1009 CA-TGAGAACAGTGAGAGACGGCACGGTCCGTTTATTGCTGTCAATTGCG   1057
                     || |..| .||||||.||.|...|.||.||||||||||||||.|||||||
BPUM_0455___a   1039 CACTCCG-CCAGTGAAAGGCATAAAGGGCCGTTTATTGCTGTTAATTGCG   1087

BSNT_01351___   1058 GAGCGATTCCGTCTGA---TTTGATTGAAAGCGAACTATTCGGATATGCA   1104
                     ||||.||||   ||||   ..||.|.|||||.||.||.||.||.||||..
BPUM_0455___a   1088 GAGCCATTC---CTGAAAGCCTGTTAGAAAGTGAGCTGTTTGGCTATGTT   1134

BSNT_01351___   1105 GAGGGCGCTTTTACGGGAGCGAAACGAAATGGCTATAAAGGCGCCTTTCA   1154
                     ||.||.||||||||.||.||||||||..|.||...||||||....|||.|
BPUM_0455___a   1135 GAAGGGGCTTTTACAGGGGCGAAACGTCACGGAGCTAAAGGGAAATTTGA   1184

BSNT_01351___   1155 AAAAGCGAATCAAGGCACATTATTTTTAGATGAAATCGGAGAAATTTCCC   1204
                     |.||||..||.||||.||..|.|||.||||||||||.||.||||  ||||
BPUM_0455___a   1185 ACAAGCCCATAAAGGAACGCTCTTTCTAGATGAAATAGGTGAAA--TCCC   1232

BSNT_01351___   1205 ACT---CGATGCAGGTTGCGCTTTTACGGGTGCTTCAGGAA--------C   1243
                     | |   |||||||.||.||||||.|.||||||.|..|.|||        |
BPUM_0455___a   1233 A-TATGCGATGCAAGTAGCGCTTCTTCGGGTGATAGAAGAAAGGGCAGTC   1281

BSNT_01351___   1244 GCAAGATAACGCCAATCGGCGGGACGAAAGAAATTCCGGTTGATA-TCAG   1292
                     |     ||.|||   ||||||||||..|.|||||.||..|.|||| ||.|
BPUM_0455___a   1282 G-----TACCGC---TCGGCGGGACACACGAAATCCCTTTGGATATTCGG   1323

BSNT_01351___   1293 AGTTATTGCCGCCACACATTGTGATTTACGCGAGC--TTGCCGAAAACGG   1340
                     | ||||..|.||.||.||..||.||.|.|.|||.|  |||..|.||  ||
BPUM_0455___a   1324 A-TTATCACAGCGACTCACCGTAATATGCACGAACTATTGAAGGAA--GG   1370

BSNT_01351___   1341 AAAAATCAGAGAGGACTTGTTTTACCGTCTTCATGTCTATCCAATTGAAC   1390
                     ||||||..||||||||||||.|||.|||||||||||||||||.| |.|||
BPUM_0455___a   1371 AAAAATACGAGAGGACTTGTATTATCGTCTTCATGTCTATCCGA-TCAAC   1419

BSNT_01351___   1391 -TCCCTCC-ATTACGCGATCGCACCGAGGATATCCCGG----ACCTCTTT   1434
                      ||||.|| .||| |.||..|.|..||.||.||.|..|    |..||.||
BPUM_0455___a   1420 ATCCCGCCGCTTA-GAGAAAGAAAAGAAGACATTCATGATTTATATCGTT   1468

BSNT_01351___   1435 GAGCACTACAAACAGAAGAATCATTGG---CCAGGCGAACTTCCT---TC   1478
                         |.|||.||.|.|||.|.||.|||   .|| |||  .|||||   ||
BPUM_0455___a   1469 ----ATTACCAAAAAAAGCACCACTGGAATGCA-GCG--TTTCCTGAATC   1511

BSNT_01351___   1479 TGATTTTT---GTAATGTGCTGAAGCAATGGAAGTGGCCGGGGAATATCC   1525
                       ||||||   |.|||    ||.||.|.|...|.|||||.||.||.||.|
BPUM_0455___a   1512 --ATTTTTTCAGAAAT----TGCAGGAGTATCACTGGCCAGGTAACATAC   1555

BSNT_01351___   1526 GTGAGCTGTTTAATGTGTTTGAACGTCT-----TTCTATCAGATTTCCGG   1570
                     |.|||||.|||||..|||||||||.|.|     ||||     .||||||.
BPUM_0455___a   1556 GAGAGCTTTTTAACCTGTTTGAACATTTAAGGGTTCT-----CTTTCCGA   1600

BSNT_01351___   1571 ACGGCCGGCT-GAGGGA----TGAACCGCTACCCGCTT---TACTGGAAG   1612
                     |.||     | ||.|||    ||||.|||.|...||||   ||.|.| ||
BPUM_0455___a   1601 ATGG-----TGGATGGATTGGTGAATCGCAATATGCTTCAGTATTAG-AG   1644

BSNT_01351___   1613 CCGCTGGATTGCCGGCCAGCTCTGCAGAAAAAAAGCCG--GCT---GCTG   1657
                     .||.|.|||                 .|.|||||||.|  |||   .||.
BPUM_0455___a   1645 TCGATTGAT-----------------CATAAAAAGCAGAAGCTTCATCTA   1677

BSNT_01351___   1658 CCGGCGT-------------------GCTTACCTTTCGTGAGCAAATCCA   1688
                     .|||.||                   .||.||.||..|.||.|..||.||
BPUM_0455___a   1678 GCGGAGTATACGAAGACTCCAAAAGAACTCACATTCAGGGAACGTATTCA   1727

BSNT_01351___   1689 AAAGGATATGATGATCAAAGCGCTTGAATCAGCAAAAGGAAACGTC----   1734
                     ||||.|.|...||.|..|.||.| ||.||    ||||.||||.|||    
BPUM_0455___a   1728 AAAGCAAACAGTGGTAGACGCAC-TGCAT----AAAACGAAAGGTCATGT   1772

BSNT_01351___   1735 -TCTCAAGCCGCAA--AAATCAGCGGGA-TCCCCCGAAGCACTTTCTACA   1780
                      ||..||||.||.|  ..||||   ||| |.||..||||.|||||.||.|
BPUM_0455___a   1773 GTCAGAAGCAGCGAGGCTATCA---GGAGTGCCAAGAAGTACTTTTTATA   1819

BSNT_01351___   1781 AACGCCTGAAAAAATTCAACTTGTCCGCTGAATCATAA   1818
                     |..|..|||.|||.||       ||..|||  ||.|||
BPUM_0455___a   1820 AGTGGATGAGAAAGTT-------TCATCTG--TCTTAA   1848


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