Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01349 and BPUM_0454
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01349___acoL.1.24716.seq
# -bsequence dna-align/BPUM_0454___acoL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01349___acoL-BPUM_0454___acoL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01349___acoL-BPUM_0454___acoL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01349___acoL
# 2: BPUM_0454___acoL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1511
# Identity: 934/1511 (61.8%)
# Similarity: 934/1511 (61.8%)
# Gaps: 265/1511 (17.5%)
# Score: 2549.0
#
#
#=======================================
BSNT_01349___ 1 ATGACATTAGCCATTATCGGCGGCGGACCTGCAGGCTATGCGGCTGCGGT 50
||||||.|.|.||||||.||.||||||||.|||||.||||.|
BPUM_0454___a 1 ATGACACTGGTCATTATAGGAGGCGGACCAGCAGGTTATGTG-------- 42
BSNT_01349___ 51 TTCCGCGGC----ACAGCAG--------GGCAGAAACGTGCTGCTTATTG 88
||||| |||||.| |||||..|.||..||.|.||||
BPUM_0454___a 43 ----GCGGCCATAACAGCCGCCCGTTTTGGCAGGGAGGTTGTGTTAATTG 88
BSNT_01349___ 89 ACAAAGGCAAGCTTGGAGGGACCTGCCTGAATGAAGGCTGCATCCCGA-C 137
|..||||..||||.|||||.||||||||.|||||||||||.||||||| |
BPUM_0454___a 89 ATCAAGGTCAGCTGGGAGGTACCTGCCTCAATGAAGGCTGTATCCCGACC 138
BSNT_01349___ 138 AAAG-TCTTTGTTAGAAAGCGCAAACGTTCT---TGA-----TAAAATCA 178
|||| .||| ||..||||||| ||.|.| ||| |.|||||
BPUM_0454___a 139 AAAGCACTT--TTGCAAAGCGC---CGATATGTATGAGCATGTGAAATC- 182
BSNT_01349___ 179 AGCATGCCG-ACAGCTTTGGAATCGAACTTCCGG--CAGGTGCGATATCA 225
.||.| ||| .|||||.||.||.|||||.| ||.|.|| .||.||
BPUM_0454___a 183 ----GGCTGTACA-TTTTGGTATAGAGCTTCCAGAACATGAGC-CTACCA 226
BSNT_01349___ 226 GTCGATTGGAGTAAAATG-----CAAAGCCGGAAACAACAGGTTGTCAGT 270
||.||||| .||| ||||..||||||||....||.||||..
BPUM_0454___a 227 -TCCATTGG-----CATGTTGTCCAAAAACGGAAACAGTCTGTCGTCAAA 270
BSNT_01349___ 271 CAGCT---TGTCCAAGGCGTTCAGTACCTAATGAAGAAAAATCAAATACA 317
||||| || |.||.||||..|||.|.|||||.||||| ||||..||
BPUM_0454___a 271 CAGCTCACTG---ATGGTGTTCGTTACTTGATGAATAAAAA-CAAAATCA 316
BSNT_01349___ 318 -GGTTGTAAAGGGAACAGCCTCCTTTCTTTCTGAAAGAA----AGCTCTT 362
.||.|||||.||||..||.||.|||||.|| ||.| ||||.||
BPUM_0454___a 317 CCGTAGTAAATGGAAAGGCTTCATTTCTATC----AGCACATGAGCTATT 362
BSNT_01349___ 363 GATCGAAGGAGAAAAAGGAAA---AGAAATCAGAGAGGCGGACCAAGT-A 408
.||.|||.|.| ||||||| .|||||||...|.||..|.|||.| |
BPUM_0454___a 363 CATAGAAAGTG---AAGGAAAGTCTGAAATCATTCAAGCAAAGCAAATCA 409
BSNT_01349___ 409 TTGATTGCCTCCGGATCAGAGCCAATCGAGCTG-----CCTTTCGCCCCG 453
|| |||||..|.||..|.|.||| .|||| ||.||.||.||.
BPUM_0454___a 410 TT-ATTGCAACAGGGGCTGCGCC-----TGCTGCTTTACCGTTTGCACCT 453
BSNT_01349___ 454 TTTGACGGCGAATGGATCCTCGACAGCAAAGACGCGCTTTCTCTTTCCGA 503
|||||.||||||||||||.|..||||.||.||.||..|.||.|||||...
BPUM_0454___a 454 TTTGATGGCGAATGGATCATTCACAGTAAGGATGCCATGTCACTTTCTTC 503
BSNT_01349___ 504 GATTCCGTCTTCAC----TAGTCATTGTCGGCGGCGGTGTCATCGGGTGT 549
|||.||...||||| || ||||| ||.|||||.||.|||||.|||
BPUM_0454___a 504 GATCCCAGATTCACTTTGTA-TCATT---GGGGGCGGGGTGATCGGCTGT 549
BSNT_01349___ 550 GAGTATGCAGGG---CTGTTCGCCAGATTGGGATCGAAGGTGACCATCAT 596
||||.||| |.| ||.|| .||||.|||||||.|||||...|||.||
BPUM_0454___a 550 GAGTTTGC-GAGCATCTATT--GCAGAATGGGATCAAAGGTTGTCATGAT 596
BSNT_01349___ 597 TGAAACAGCGGAC-CAGCTGAT----CCCGGCTGAAGACGA---AGATAT 638
|| |||||.| |.||..|| ||| |||||.|| .||.||
BPUM_0454___a 597 TG----AGCGGGCTCTGCACATTTTACCC----GAAGAAGATCGGGAAAT 638
BSNT_01349___ 639 TGCCC---GTCTTTTTCAGGAGAAACTTGAGGAAGAC-GGTGT------- 677
.||.| ||| ||||.||..|.||.||.||| || |||||
BPUM_0454___a 639 CGCACAATGTC---TTCACGAACAGCTCGAAGAA-ACGGGTGTAGACATT 684
BSNT_01349___ 678 -----------CGAAGT------GC---ATACCTCATCCAGATTAGAACG 707
||.||| || ||.||.|.||.|||..||.|..
BPUM_0454___a 685 TTAACGGCCGCCGCAGTTAAACAGCTTGATTCCACTTCAAGAAGAGTAGT 734
BSNT_01349___ 708 GGTGG------ATCAAACGGCCAAAACGGCAATATGGAAAAGCGGT---- 747
|||.| ||||| |.|.||||||
BPUM_0454___a 735 GGTAGAGAATAATCAA--------------------GGAGAGCGGTGTGA 764
BSNT_01349___ 748 CAGCGAGAGTTTAAAACGAAGGCCGATTATGTGC-TGGTGGCGATCGGCA 796
||.|.|| .|| |.|| |.||| |.||||||||.||||
BPUM_0454___a 765 CATCCAG--------TCG--GACC-----TATGCTTAGTGGCGATTGGCA 799
BSNT_01349___ 797 GAAAACCCCGTCTTGACGGATTACAGCTTGAACAGGCCGGAGTTGATTTT 846
|||..||.|..|||||.|..||..|.|||||.|||...|||.||||.|||
BPUM_0454___a 800 GAACTCCGCAACTTGAAGAGTTGAATCTTGATCAGATTGGAATTGAATTT 849
BSNT_01349___ 847 TCTCCAAAGGGCAT-TCCGGTGAATGGGCACATGCAGACGAACGTGCCTC 895
..|..|||.||.|| |.| ||.||||..||.|||||.||.||..|.||.|
BPUM_0454___a 850 GATAGAAACGGAATCTAC-GTCAATGAACATATGCAAACCAATCTCCCGC 898
BSNT_01349___ 896 ATATTTACGCGTGCGGAGATGCTATAGGGGGCATTCAGCTCGCGCATGCC 945
|||||||.||||||||.||||..|.|||.||.||.|||||.||.|||.|.
BPUM_0454___a 899 ATATTTATGCGTGCGGTGATGTGACAGGTGGTATACAGCTTGCTCATACT 948
BSNT_01349___ 946 GCTTTCCATGAGGGCATCATCGCTGCTTCTCATGCTTCCGGAAGG----G 991
||.||.|||||.||.||..|.||.||.||.|||| |||.||| .
BPUM_0454___a 949 GCCTTTCATGAAGGAATGGTTGCGGCATCCCATG----CGGCAGGTGAAC 994
BSNT_01349___ 992 ATGTCAAAATCAATGAGAAACATGTG---CCGCGCTGCATCTATACGTCC 1038
||.|.||..|||||| ||||.||| ||..|.||||||||.||.||.
BPUM_0454___a 995 ATATAAAGGTCAATG---AACAAGTGATTCCAAGGTGCATCTACACCTCT 1041
BSNT_01349___ 1039 CCAGAAATCGCGTGTATCGG----AATGACAGAACGACAG-GCAAG--AA 1081
||||||||.|||.||.|.|| |||| |.||.|| ||.|| ||
BPUM_0454___a 1042 CCAGAAATAGCGAGTGTTGGTTTAAATG-----AAGAGAGTGCTAGAAAA 1086
BSNT_01349___ 1082 GAATATACGGCGAT--GTGAAAATTGGCGA-ATTTCCTTTTTCCGCAAAC 1128
.|||||..||.||| || ||.|| || ||.|.|||||||.|||||.
BPUM_0454___a 1087 CAATATGAGGAGATTCGT----ATCGG-GACATGTGCTTTTTCTGCAAAT 1131
BSNT_01349___ 1129 GGCAAGGC---GCTCATTAAA-CAGCAAGCGG---AAGGAAAGGTCAAAA 1171
||.||||| |.|| ||||| ||.|.|||.| |||.|||||
BPUM_0454___a 1132 GGAAAGGCATTGATC-TTAAATCAACCAGCCGGTCAAGTAAAGG------ 1174
BSNT_01349___ 1172 TCATGGCTGAACCGGAAT-TCGGCGAAATCGTGGGTGTCTCGATGATTGG 1220
|.||.|..||||||.||| || ..|||||.||.|||||.||.||.||.||
BPUM_0454___a 1175 TTATTGTAGAACCGCAATATC-AAGAAATAGTAGGTGTTTCAATCATCGG 1223
BSNT_01349___ 1221 CCCGGATGTAACCGAGCTCATCGGCCAAGCGGCAGCGATCATGAATGGTG 1270
.|||.|||.|||.||.||.||.||.||||||||.|.|||.|||.||...|
BPUM_0454___a 1224 ACCGCATGCAACAGAACTGATTGGACAAGCGGCGGTGATGATGCATACCG 1273
BSNT_01349___ 1271 AGATGACGGCAGATATGGCGGAGCATTTTATCGCCGCCCATCCGACTTTA 1320
||.||||.||.||||.....|||||.|||||.||.||.||||||||..|.
BPUM_0454___a 1274 AGCTGACCGCTGATACATTAGAGCAGTTTATTGCGGCACATCCGACACTT 1323
BSNT_01349___ 1321 TCGGAAACATTGCATGAGGC---GCTGTTAAGCACGATCGGCCTTGCGGT 1367
||.||..||.|.|||||.|| ||||..| ||.||.||||..|||||
BPUM_0454___a 1324 TCAGAGGCAATACATGAAGCCTTGCTGCAA---ACCATTGGCCGAGCGGT 1370
BSNT_01349___ 1368 ACA-TGCATAA 1377
.|| |||..|
BPUM_0454___a 1371 GCACTGCTGA- 1380
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