Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00811 and BPUM_0448

See Amino acid alignment / Visit BSNT_00811 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:35
# Commandline: needle
#    -asequence dna-align/BSNT_00811___ydcI.1.24716.seq
#    -bsequence dna-align/BPUM_0448___ydcI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00811___ydcI-BPUM_0448___ydcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00811___ydcI-BPUM_0448___ydcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00811___ydcI
# 2: BPUM_0448___ydcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2263
# Identity:    1560/2263 (68.9%)
# Similarity:  1560/2263 (68.9%)
# Gaps:         206/2263 ( 9.1%)
# Score: 5110.5
# 
#
#=======================================

BSNT_00811___      1 ATGGAAACGTCAGCCCTTTTA---AAACAGCAAATTGCGAAAGAA--ATA     45
                     |||.|.||.||.|.|.|||||   |||   ||||||||.|.||||  |.|
BPUM_0448___y      1 ATGAAGACATCTGACTTTTTATTGAAA---CAAATTGCAACAGAATTAAA     47

BSNT_00811___     46 GGTTTATCACAA--AAACACGTTGAAAGTGTCATCCGCCTGCTAGAAGAC     93
                     |.|||    |||  |||||..||||||||||||||...||..||||.||.
BPUM_0448___y     48 GCTTT----CAACCAAACAAATTGAAAGTGTCATCAAGCTCTTAGAGGAT     93

BSNT_00811___     94 GGCAATACAGTACCGTTTATTGCCCGGTATCGAAAAGAGCAGACGGGTTC    143
                     |||||.||.||.||||||||||||||.||.||.|||||||||||.||.||
BPUM_0448___y     94 GGCAACACCGTCCCGTTTATTGCCCGTTACCGGAAAGAGCAGACAGGCTC    143

BSNT_00811___    144 AATGGATGAGGTTCAGATTCAGACGATTTCTGAACGCTGGCAATACATA-    192
                     ..||||||||||.||.|||||.||.|||||.||.||||    ||||||| 
BPUM_0448___y    144 GCTGGATGAGGTGCAAATTCAAACCATTTCAGAGCGCT----ATACATAT    189

BSNT_00811___    193 ---CAAAA---CCTGAACCAGCGAAAAGAAGAAGTCATCAGGCTGATTGC    236
                        |||||   |.|||||   ||||||||||||||||||.||.|.||.||
BPUM_0448___y    190 ATCCAAAATGTCATGAAC---CGAAAAGAAGAAGTCATCCGGTTAATCGC    236

BSNT_00811___    237 AGAGCAGGATAAACTGACAGATGATCTAAAAGGTAAAATCGAGCAATCGG    286
                     |||.||.||.||||||||.|||||..|||||...|||||.||||||.|..
BPUM_0448___y    237 AGAACAAGACAAACTGACGGATGAATTAAAACAAAAAATTGAGCAAGCTC    286

BSNT_00811___    287 TGAAGCTTCAGGAAGTGGAAGACCTTTACCGCCCTTATAAACAAAAACGC    336
                     ..||.||.||.||.||.|||||..|.|||||.||.|..|||||||||||.
BPUM_0448___y    287 ATAAACTGCAAGAGGTCGAAGATTTATACCGGCCATTCAAACAAAAACGT    336

BSNT_00811___    337 AAAACAAAGGCGACAGTCGCCAAAAGC-AAAGGCCTTGAGCCGCTTGCCG    385
                     |||||||||||.|..||.||| ||||| |||||.|||||||||||.||.|
BPUM_0448___y    337 AAAACAAAGGCAAATGTAGCC-AAAGCAAAAGGGCTTGAGCCGCTGGCGG    385

BSNT_00811___    386 ACTATATCCTGACACTTCCCCAA--GAT--GATCGTCTGGCAGCAACTGC    431
                     |.|||||.||  |||.|..||||  |||  |||||      ||.||   .
BPUM_0448___y    386 AATATATACT--CACATTGCCAAGCGATGAGATCG------AGAAA---A    424

BSNT_00811___    432 AGACCAATAC----ATCAGCGAAGAAAAAGAAGTGTTCACACG---AGAA    474
                     ||.||..|.|    ||||.||||||.|||||||   |.|||.|   ||||
BPUM_0448___y    425 AGGCCGCTTCTTTTATCAACGAAGATAAAGAAG---TAACAAGTGTAGAA    471

BSNT_00811___    475 GAAGCGATTGAAGGCGCCAAGCACATTATTGCGGAACAAATCTCAGACGA    524
                     ||.|||.|||||||.||..||||.||.|||||.|||||..|..||||.||
BPUM_0448___y    472 GAGGCGCTTGAAGGTGCGCAGCATATCATTGCTGAACAGCTGGCAGATGA    521

BSNT_00811___    525 GCC-GACCTTCAGAAAGTGGATTCGCCAG-GAAACCT-TCAAAAGAGGAA    571
                     .|| ||..|.|.|||| |||||||| .|| |||||.| .||||||.|   
BPUM_0448___y    522 TCCTGATATGCGGAAA-TGGATTCG-TAGCGAAACGTACCAAAAGGG---    566

BSNT_00811___    572 CCATTAAGTC----CGCAGCCGGAAAGTCGGCAGAC------ACCGATGA    611
                          .||||    |.||.|.|||||      ||||      |.||||||
BPUM_0448___y    567 -----TAGTCTGATCACATCAGGAAA------AGACATCGAAAACGATGA    605

BSNT_00811___    612 GAAAAATGTGTATGAAATGTATTACGAGTATGAAGAGCCAATTGCAAAA-    660
                     |||||||||.|||||||||||||||||.|||.|||||||.||  ||||| 
BPUM_0448___y    606 GAAAAATGTCTATGAAATGTATTACGATTATCAAGAGCCGAT--CAAAAA    653

BSNT_00811___    661 -GTTGTTCCGCATAGGGTGCTGGCAATGAACCGCGGCGAAAAAGAAGATA    709
                      .|.||.|||||..|.||.||.||..||||.|||||.||.|||||||..|
BPUM_0448___y    654 GATAGTGCCGCACCGTGTACTAGCGGTGAATCGCGGAGAGAAAGAAGGCA    703

BSNT_00811___    710 TTTTAAAGGTAGCGATCGAACCGCCTGCGGATCACATTAAGGCG----TA    755
                     |.|||||||.|||.|||||.||||||||.||..|.|||    ||    ||
BPUM_0448___y    704 TCTTAAAGGCAGCCATCGAGCCGCCTGCTGAAAATATT----CGTTTCTA    749

BSNT_00811___    756 TTTAGAAAAACAAATCATCAAAAATCGCTCAACATCCGTAAGAGAGA---    802
                     |.|.||.||||||.||||.|||    |...||||..||...|.||||   
BPUM_0448___y    750 TCTCGACAAACAAGTCATAAAA----GGCAAACAGACGACGGCGAGACCG    795

BSNT_00811___    803 -TTTTGCAGGAGACAATTGAAGA--CAGCTATAAAAGGCTGATCCAGCCG    849
                      ||.|..|.|.|.|||||||.||  ||  ||||||.|.||.||||||||.
BPUM_0448___y    796 TTTATCGAAGCGGCAATTGACGATGCA--TATAAACGTCTTATCCAGCCA    843

BSNT_00811___    850 GCAATCGAGCGTGAAATCAGGAAAGAGCTCTCAGAAAAAGCTGATGAACA    899
                     .|.|||||.||.||||||.|.||||||||..||||||||||.||.|||||
BPUM_0448___y    844 TCCATCGAACGAGAAATCCGCAAAGAGCTGACAGAAAAAGCAGAAGAACA    893

BSNT_00811___    900 GGCGATTCATATTTTCTCAGAGAACTTGAGAAAGCTTCTTTTGCAGCCGC    949
                     .|||||||||||||||.|.||.|||||.|||||.||.||..|.|||||||
BPUM_0448___y    894 AGCGATTCATATTTTCGCTGAAAACTTAAGAAAACTGCTGCTTCAGCCGC    943

BSNT_00811___    950 CGATGAAAGGCAAAACCGTTCTCGGTGTTGACCCAGCCTTTCGAACCGGC    999
                     ||||||||||.||....||.||.||.||.||.||.||.|||||.||.|||
BPUM_0448___y    944 CGATGAAAGGGAAGCGTGTACTTGGAGTCGATCCTGCATTTCGGACAGGC    993

BSNT_00811___   1000 TGTAAGCTCGCTGT-GTCAGATGAGACTGGAAAAGTCTTGAAAATTGATG   1048
                     ||||||.|.||.|| || .|||||.||.||.||||||....|.||.|..|
BPUM_0448___y    994 TGTAAGTTAGCCGTCGT-GGATGATACAGGTAAAGTCCATCATATCGGCG   1042

BSNT_00811___   1049 TGATCTATCCGCATGCGCCAGTCAACAAAACAAAAGAAGCCCATGAAAAA   1098
                     |.||.||.||||||.|||||||..|.||||.|...|||||..|..|||||
BPUM_0448___y   1043 TCATTTACCCGCATCCGCCAGTGCAGAAAAAAGCGGAAGCGAAACAAAAA   1092

BSNT_00811___   1099 GTGAAAAAGATTCTTGAGCAGT-ATCAAGTCGAGATGG------TGGCGA   1141
                     ||||||.||||..||   ||.| |||||    |.||.|      |.||.|
BPUM_0448___y   1093 GTGAAAGAGATCATT---CAATCATCAA----ATATTGAAGTCATTGCAA   1135

BSNT_00811___   1142 TCGGAAACGGCACAGCATCCAGAGAAACAGAACAATTCATCG--------   1183
                     |.||||||||.|||||.||.|||||.||.|||||||||||.|        
BPUM_0448___y   1136 TTGGAAACGGAACAGCCTCAAGAGAGACTGAACAATTCATTGCAGACCTC   1185

BSNT_00811___   1184 --TCAATGTACTGAAAGA-CATGCCGCGCAAAATTTATTATGTGATCGTC   1230
                       |||| |..|||   || || |||      |.|.|..|||.||||.||.
BPUM_0448___y   1186 ATTCAA-GAGCTG---GATCA-GCC------AGTCTCCTATTTGATTGTG   1224

BSNT_00811___   1231 AATGAAGCGGGTGCAAGCGTCTATTCGGCTTCAGAGCTGGCCCGAGAAGA   1280
                     ||||||||.||.|||||.||.||.||.||.||.|..|||||..|||||||
BPUM_0448___y   1225 AATGAAGCAGGAGCAAGTGTATACTCTGCGTCTGCACTGGCGAGAGAAGA   1274

BSNT_00811___   1281 ATTCCCTGACCTTAAGGTTGAAGAGCGCAGTGCCGTGTCTATTGCGCGAA   1330
                     .||.||.|||||..|.||.|||||.||.||.||..|.||.|||||.||||
BPUM_0448___y   1275 GTTTCCAGACCTGCAAGTCGAAGAACGAAGCGCTATATCCATTGCTCGAA   1324

BSNT_00811___   1331 GACTTCAAGACCCGCTTGCGGAGCTCGTTAAAATCGATCCGAAGTCTGTT   1380
                     ||.|.|||||.||..|.||.||||||||.|||||.||||||||.|||||.
BPUM_0448___y   1325 GATTACAAGATCCTTTAGCAGAGCTCGTGAAAATTGATCCGAAATCTGTC   1374

BSNT_00811___   1381 GGTGTCGGACAGTATCAGCATGACGTCAGCCAAAAACGCTTAAA------   1424
                     ||.||.||.||.||.|||||||||||.||||||||.|..|||||      
BPUM_0448___y   1375 GGGGTAGGCCAATACCAGCATGACGTGAGCCAAAAGCAATTAAACAGCTC   1424

BSNT_00811___   1425 -TGAATCTCTGCGGTTTGTCGTCGAAACGGTCGTAAACCAGGTGGGAGTA   1473
                      |.||.|       ||.||.||.||.||||||||.|||||.||.||.||.
BPUM_0448___y   1425 GTTAACC-------TTCGTGGTGGAGACGGTCGTCAACCAAGTCGGTGTG   1467

BSNT_00811___   1474 AACGTCAACACAGCCTCCGCCGCGCTGCTTCAGTATGTAGCGGGATTATC   1523
                     ||||||||.||.||.||....||||||||.||.|||||..|.||..|.||
BPUM_0448___y   1468 AACGTCAATACGGCTTCACAGGCGCTGCTGCAATATGTGTCAGGTCTTTC   1517

BSNT_00811___   1524 GAAGTCTGTAGCAGGCAACGTTGTCAAAAAACGTGAGGAAATCGGAAAGT   1573
                     .||..|.||.|||||.||..|..|||||...||.||.||.||.||||..|
BPUM_0448___y   1518 AAAAGCCGTCGCAGGAAATATCATCAAACGCCGCGAAGAGATTGGAAGAT   1567

BSNT_00811___   1574 TTTCAAATCGAAAAGAACTGAAGGACATCCCAAGGTTAGGTGCGAAAACC   1623
                     |..|||...|||||||.||.||||||||.||.||..|.||.||.||.||.
BPUM_0448___y   1568 TCACAAGCAGAAAAGAGCTAAAGGACATTCCGAGACTTGGGGCAAAGACT   1617

BSNT_00811___   1624 TACGAGCAATGTATCGGTTTCTTAAG-AGTGCAGGAAGGGACA-GAGCCT   1671
                     ||.|||||.||||||||||||.|..| |..||||  |.||||| ||.||.
BPUM_0448___y   1618 TATGAGCAGTGTATCGGTTTCCTGCGCATCGCAG--ATGGACAGGATCCA   1665

BSNT_00811___   1672 TTGGATAGAACAGGCATCCACCCGGAAAGCTATAAAGAAACAAAAGCACT   1721
                     .|.|||.|.|||||.||.|||||.||.|||||||||||||||||| ||.|
BPUM_0448___y   1666 CTCGATCGGACAGGTATTCACCCAGAGAGCTATAAAGAAACAAAA-CAGT   1714

BSNT_00811___   1722 TTTGAAAAAACTCGGACTTTCAA--------CAGAACATATCGGCACGGC   1763
                     |.|.|       ||.|...||||        ||||..||.|.|||||.|.
BPUM_0448___y   1715 TCTTA-------CGCATGATCAAGATGACGCCAGATGATCTTGGCACAGA   1757

BSNT_00811___   1764 GGAATTGAAGGACAAAATC------AATCAGCTGGCGCTCTCTGAAACGG   1807
                     |.|.||.|||||.||||||      ..|.||||||      .||||.|.|
BPUM_0448___y   1758 GCAGTTAAAGGAGAAAATCGCAGAGGTTAAGCTGG------ATGAAGCAG   1801

BSNT_00811___   1808 CAAAAGAGCTGGGAATCGGCGAAATCACTCTGAAAGACATTTGT-GAACA   1856
                     ||.|..||||.|..||.|||...|||||.||..||||.| |.|| ||.||
BPUM_0448___y   1802 CAGAGCAGCTTGATATTGGCATCATCACACTACAAGATA-TCGTCGATCA   1850

BSNT_00811___   1857 GCTGACAAGGCCGGAACGCGATCCGCGCGATGAGGTGCCTAAGCCTTTGC   1906
                     |||||||||.||.||.||.||||||||||||||.||.||.||.|||.|..
BPUM_0448___y   1851 GCTGACAAGACCTGAGCGTGATCCGCGCGATGAAGTACCAAAACCTCTTT   1900

BSNT_00811___   1907 TGAAAACAGACGTCCTTCAGCTGGAAGATTTGAAAGAGGGAATGGAACTG   1956
                     ||||||||||.||..|..|..||||.||.|||||..|.||||||||.|||
BPUM_0448___y   1901 TGAAAACAGATGTGTTGAAATTGGAGGACTTGAAGCAAGGAATGGAGCTG   1950

BSNT_00811___   1957 CAGGGCACCGTGCGCAATGTAGTGGACTTCGGAGCGTTTGTTGATATCGG   2006
                     ||.||.||.||..|.||.||.||.||||||||.||.||.||||||||.||
BPUM_0448___y   1951 CAAGGAACGGTAAGAAACGTCGTAGACTTCGGCGCATTCGTTGATATTGG   2000

BSNT_00811___   2007 AGTCAAACAAGACGGGCTTGTGCATATCTCAAAATTGAGCAATCAATTCG   2056
                     .|||||.||.|||||||||||.|||||.||.||..|.|||||.|..||.|
BPUM_0448___y   2001 CGTCAAGCAGGACGGGCTTGTCCATATTTCTAAGCTCAGCAACCGTTTTG   2050

BSNT_00811___   2057 TCAAGCATCCTCTTGATGTCGTATCTGTCGGCGATATTGTGACAGTTTGG   2106
                     |.|||||.||.|||||.||.|||||.||.||.||.||||||||.||.|||
BPUM_0448___y   2051 TAAAGCACCCGCTTGACGTTGTATCAGTTGGTGACATTGTGACTGTATGG   2100

BSNT_00811___   2107 GTTGACGGCGTAGATGTACA---AAAAGGCAGAGTATCGCTGTCTATGGT   2153
                     ||.|||..|||   ||..||   |||||||.|.||..|.||.||.|||.|
BPUM_0448___y   2101 GTGGACTCCGT---TGACCAGGCAAAAGGCCGCGTTGCCCTCTCCATGCT   2147

BSNT_00811___   2154 ------AAAATAA   2160
                           |.|||||
BPUM_0448___y   2148 GAAACCAGAATAA   2160


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