Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00811 and BPUM_0448
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence dna-align/BSNT_00811___ydcI.1.24716.seq
# -bsequence dna-align/BPUM_0448___ydcI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00811___ydcI-BPUM_0448___ydcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00811___ydcI-BPUM_0448___ydcI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00811___ydcI
# 2: BPUM_0448___ydcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2263
# Identity: 1560/2263 (68.9%)
# Similarity: 1560/2263 (68.9%)
# Gaps: 206/2263 ( 9.1%)
# Score: 5110.5
#
#
#=======================================
BSNT_00811___ 1 ATGGAAACGTCAGCCCTTTTA---AAACAGCAAATTGCGAAAGAA--ATA 45
|||.|.||.||.|.|.||||| ||| ||||||||.|.|||| |.|
BPUM_0448___y 1 ATGAAGACATCTGACTTTTTATTGAAA---CAAATTGCAACAGAATTAAA 47
BSNT_00811___ 46 GGTTTATCACAA--AAACACGTTGAAAGTGTCATCCGCCTGCTAGAAGAC 93
|.||| ||| |||||..||||||||||||||...||..||||.||.
BPUM_0448___y 48 GCTTT----CAACCAAACAAATTGAAAGTGTCATCAAGCTCTTAGAGGAT 93
BSNT_00811___ 94 GGCAATACAGTACCGTTTATTGCCCGGTATCGAAAAGAGCAGACGGGTTC 143
|||||.||.||.||||||||||||||.||.||.|||||||||||.||.||
BPUM_0448___y 94 GGCAACACCGTCCCGTTTATTGCCCGTTACCGGAAAGAGCAGACAGGCTC 143
BSNT_00811___ 144 AATGGATGAGGTTCAGATTCAGACGATTTCTGAACGCTGGCAATACATA- 192
..||||||||||.||.|||||.||.|||||.||.|||| |||||||
BPUM_0448___y 144 GCTGGATGAGGTGCAAATTCAAACCATTTCAGAGCGCT----ATACATAT 189
BSNT_00811___ 193 ---CAAAA---CCTGAACCAGCGAAAAGAAGAAGTCATCAGGCTGATTGC 236
||||| |.||||| ||||||||||||||||||.||.|.||.||
BPUM_0448___y 190 ATCCAAAATGTCATGAAC---CGAAAAGAAGAAGTCATCCGGTTAATCGC 236
BSNT_00811___ 237 AGAGCAGGATAAACTGACAGATGATCTAAAAGGTAAAATCGAGCAATCGG 286
|||.||.||.||||||||.|||||..|||||...|||||.||||||.|..
BPUM_0448___y 237 AGAACAAGACAAACTGACGGATGAATTAAAACAAAAAATTGAGCAAGCTC 286
BSNT_00811___ 287 TGAAGCTTCAGGAAGTGGAAGACCTTTACCGCCCTTATAAACAAAAACGC 336
..||.||.||.||.||.|||||..|.|||||.||.|..|||||||||||.
BPUM_0448___y 287 ATAAACTGCAAGAGGTCGAAGATTTATACCGGCCATTCAAACAAAAACGT 336
BSNT_00811___ 337 AAAACAAAGGCGACAGTCGCCAAAAGC-AAAGGCCTTGAGCCGCTTGCCG 385
|||||||||||.|..||.||| ||||| |||||.|||||||||||.||.|
BPUM_0448___y 337 AAAACAAAGGCAAATGTAGCC-AAAGCAAAAGGGCTTGAGCCGCTGGCGG 385
BSNT_00811___ 386 ACTATATCCTGACACTTCCCCAA--GAT--GATCGTCTGGCAGCAACTGC 431
|.|||||.|| |||.|..|||| ||| ||||| ||.|| .
BPUM_0448___y 386 AATATATACT--CACATTGCCAAGCGATGAGATCG------AGAAA---A 424
BSNT_00811___ 432 AGACCAATAC----ATCAGCGAAGAAAAAGAAGTGTTCACACG---AGAA 474
||.||..|.| ||||.||||||.||||||| |.|||.| ||||
BPUM_0448___y 425 AGGCCGCTTCTTTTATCAACGAAGATAAAGAAG---TAACAAGTGTAGAA 471
BSNT_00811___ 475 GAAGCGATTGAAGGCGCCAAGCACATTATTGCGGAACAAATCTCAGACGA 524
||.|||.|||||||.||..||||.||.|||||.|||||..|..||||.||
BPUM_0448___y 472 GAGGCGCTTGAAGGTGCGCAGCATATCATTGCTGAACAGCTGGCAGATGA 521
BSNT_00811___ 525 GCC-GACCTTCAGAAAGTGGATTCGCCAG-GAAACCT-TCAAAAGAGGAA 571
.|| ||..|.|.|||| |||||||| .|| |||||.| .||||||.|
BPUM_0448___y 522 TCCTGATATGCGGAAA-TGGATTCG-TAGCGAAACGTACCAAAAGGG--- 566
BSNT_00811___ 572 CCATTAAGTC----CGCAGCCGGAAAGTCGGCAGAC------ACCGATGA 611
.|||| |.||.|.||||| |||| |.||||||
BPUM_0448___y 567 -----TAGTCTGATCACATCAGGAAA------AGACATCGAAAACGATGA 605
BSNT_00811___ 612 GAAAAATGTGTATGAAATGTATTACGAGTATGAAGAGCCAATTGCAAAA- 660
|||||||||.|||||||||||||||||.|||.|||||||.|| |||||
BPUM_0448___y 606 GAAAAATGTCTATGAAATGTATTACGATTATCAAGAGCCGAT--CAAAAA 653
BSNT_00811___ 661 -GTTGTTCCGCATAGGGTGCTGGCAATGAACCGCGGCGAAAAAGAAGATA 709
.|.||.|||||..|.||.||.||..||||.|||||.||.|||||||..|
BPUM_0448___y 654 GATAGTGCCGCACCGTGTACTAGCGGTGAATCGCGGAGAGAAAGAAGGCA 703
BSNT_00811___ 710 TTTTAAAGGTAGCGATCGAACCGCCTGCGGATCACATTAAGGCG----TA 755
|.|||||||.|||.|||||.||||||||.||..|.||| || ||
BPUM_0448___y 704 TCTTAAAGGCAGCCATCGAGCCGCCTGCTGAAAATATT----CGTTTCTA 749
BSNT_00811___ 756 TTTAGAAAAACAAATCATCAAAAATCGCTCAACATCCGTAAGAGAGA--- 802
|.|.||.||||||.||||.||| |...||||..||...|.||||
BPUM_0448___y 750 TCTCGACAAACAAGTCATAAAA----GGCAAACAGACGACGGCGAGACCG 795
BSNT_00811___ 803 -TTTTGCAGGAGACAATTGAAGA--CAGCTATAAAAGGCTGATCCAGCCG 849
||.|..|.|.|.|||||||.|| || ||||||.|.||.||||||||.
BPUM_0448___y 796 TTTATCGAAGCGGCAATTGACGATGCA--TATAAACGTCTTATCCAGCCA 843
BSNT_00811___ 850 GCAATCGAGCGTGAAATCAGGAAAGAGCTCTCAGAAAAAGCTGATGAACA 899
.|.|||||.||.||||||.|.||||||||..||||||||||.||.|||||
BPUM_0448___y 844 TCCATCGAACGAGAAATCCGCAAAGAGCTGACAGAAAAAGCAGAAGAACA 893
BSNT_00811___ 900 GGCGATTCATATTTTCTCAGAGAACTTGAGAAAGCTTCTTTTGCAGCCGC 949
.|||||||||||||||.|.||.|||||.|||||.||.||..|.|||||||
BPUM_0448___y 894 AGCGATTCATATTTTCGCTGAAAACTTAAGAAAACTGCTGCTTCAGCCGC 943
BSNT_00811___ 950 CGATGAAAGGCAAAACCGTTCTCGGTGTTGACCCAGCCTTTCGAACCGGC 999
||||||||||.||....||.||.||.||.||.||.||.|||||.||.|||
BPUM_0448___y 944 CGATGAAAGGGAAGCGTGTACTTGGAGTCGATCCTGCATTTCGGACAGGC 993
BSNT_00811___ 1000 TGTAAGCTCGCTGT-GTCAGATGAGACTGGAAAAGTCTTGAAAATTGATG 1048
||||||.|.||.|| || .|||||.||.||.||||||....|.||.|..|
BPUM_0448___y 994 TGTAAGTTAGCCGTCGT-GGATGATACAGGTAAAGTCCATCATATCGGCG 1042
BSNT_00811___ 1049 TGATCTATCCGCATGCGCCAGTCAACAAAACAAAAGAAGCCCATGAAAAA 1098
|.||.||.||||||.|||||||..|.||||.|...|||||..|..|||||
BPUM_0448___y 1043 TCATTTACCCGCATCCGCCAGTGCAGAAAAAAGCGGAAGCGAAACAAAAA 1092
BSNT_00811___ 1099 GTGAAAAAGATTCTTGAGCAGT-ATCAAGTCGAGATGG------TGGCGA 1141
||||||.||||..|| ||.| ||||| |.||.| |.||.|
BPUM_0448___y 1093 GTGAAAGAGATCATT---CAATCATCAA----ATATTGAAGTCATTGCAA 1135
BSNT_00811___ 1142 TCGGAAACGGCACAGCATCCAGAGAAACAGAACAATTCATCG-------- 1183
|.||||||||.|||||.||.|||||.||.|||||||||||.|
BPUM_0448___y 1136 TTGGAAACGGAACAGCCTCAAGAGAGACTGAACAATTCATTGCAGACCTC 1185
BSNT_00811___ 1184 --TCAATGTACTGAAAGA-CATGCCGCGCAAAATTTATTATGTGATCGTC 1230
|||| |..||| || || ||| |.|.|..|||.||||.||.
BPUM_0448___y 1186 ATTCAA-GAGCTG---GATCA-GCC------AGTCTCCTATTTGATTGTG 1224
BSNT_00811___ 1231 AATGAAGCGGGTGCAAGCGTCTATTCGGCTTCAGAGCTGGCCCGAGAAGA 1280
||||||||.||.|||||.||.||.||.||.||.|..|||||..|||||||
BPUM_0448___y 1225 AATGAAGCAGGAGCAAGTGTATACTCTGCGTCTGCACTGGCGAGAGAAGA 1274
BSNT_00811___ 1281 ATTCCCTGACCTTAAGGTTGAAGAGCGCAGTGCCGTGTCTATTGCGCGAA 1330
.||.||.|||||..|.||.|||||.||.||.||..|.||.|||||.||||
BPUM_0448___y 1275 GTTTCCAGACCTGCAAGTCGAAGAACGAAGCGCTATATCCATTGCTCGAA 1324
BSNT_00811___ 1331 GACTTCAAGACCCGCTTGCGGAGCTCGTTAAAATCGATCCGAAGTCTGTT 1380
||.|.|||||.||..|.||.||||||||.|||||.||||||||.|||||.
BPUM_0448___y 1325 GATTACAAGATCCTTTAGCAGAGCTCGTGAAAATTGATCCGAAATCTGTC 1374
BSNT_00811___ 1381 GGTGTCGGACAGTATCAGCATGACGTCAGCCAAAAACGCTTAAA------ 1424
||.||.||.||.||.|||||||||||.||||||||.|..|||||
BPUM_0448___y 1375 GGGGTAGGCCAATACCAGCATGACGTGAGCCAAAAGCAATTAAACAGCTC 1424
BSNT_00811___ 1425 -TGAATCTCTGCGGTTTGTCGTCGAAACGGTCGTAAACCAGGTGGGAGTA 1473
|.||.| ||.||.||.||.||||||||.|||||.||.||.||.
BPUM_0448___y 1425 GTTAACC-------TTCGTGGTGGAGACGGTCGTCAACCAAGTCGGTGTG 1467
BSNT_00811___ 1474 AACGTCAACACAGCCTCCGCCGCGCTGCTTCAGTATGTAGCGGGATTATC 1523
||||||||.||.||.||....||||||||.||.|||||..|.||..|.||
BPUM_0448___y 1468 AACGTCAATACGGCTTCACAGGCGCTGCTGCAATATGTGTCAGGTCTTTC 1517
BSNT_00811___ 1524 GAAGTCTGTAGCAGGCAACGTTGTCAAAAAACGTGAGGAAATCGGAAAGT 1573
.||..|.||.|||||.||..|..|||||...||.||.||.||.||||..|
BPUM_0448___y 1518 AAAAGCCGTCGCAGGAAATATCATCAAACGCCGCGAAGAGATTGGAAGAT 1567
BSNT_00811___ 1574 TTTCAAATCGAAAAGAACTGAAGGACATCCCAAGGTTAGGTGCGAAAACC 1623
|..|||...|||||||.||.||||||||.||.||..|.||.||.||.||.
BPUM_0448___y 1568 TCACAAGCAGAAAAGAGCTAAAGGACATTCCGAGACTTGGGGCAAAGACT 1617
BSNT_00811___ 1624 TACGAGCAATGTATCGGTTTCTTAAG-AGTGCAGGAAGGGACA-GAGCCT 1671
||.|||||.||||||||||||.|..| |..|||| |.||||| ||.||.
BPUM_0448___y 1618 TATGAGCAGTGTATCGGTTTCCTGCGCATCGCAG--ATGGACAGGATCCA 1665
BSNT_00811___ 1672 TTGGATAGAACAGGCATCCACCCGGAAAGCTATAAAGAAACAAAAGCACT 1721
.|.|||.|.|||||.||.|||||.||.|||||||||||||||||| ||.|
BPUM_0448___y 1666 CTCGATCGGACAGGTATTCACCCAGAGAGCTATAAAGAAACAAAA-CAGT 1714
BSNT_00811___ 1722 TTTGAAAAAACTCGGACTTTCAA--------CAGAACATATCGGCACGGC 1763
|.|.| ||.|...|||| ||||..||.|.|||||.|.
BPUM_0448___y 1715 TCTTA-------CGCATGATCAAGATGACGCCAGATGATCTTGGCACAGA 1757
BSNT_00811___ 1764 GGAATTGAAGGACAAAATC------AATCAGCTGGCGCTCTCTGAAACGG 1807
|.|.||.|||||.|||||| ..|.|||||| .||||.|.|
BPUM_0448___y 1758 GCAGTTAAAGGAGAAAATCGCAGAGGTTAAGCTGG------ATGAAGCAG 1801
BSNT_00811___ 1808 CAAAAGAGCTGGGAATCGGCGAAATCACTCTGAAAGACATTTGT-GAACA 1856
||.|..||||.|..||.|||...|||||.||..||||.| |.|| ||.||
BPUM_0448___y 1802 CAGAGCAGCTTGATATTGGCATCATCACACTACAAGATA-TCGTCGATCA 1850
BSNT_00811___ 1857 GCTGACAAGGCCGGAACGCGATCCGCGCGATGAGGTGCCTAAGCCTTTGC 1906
|||||||||.||.||.||.||||||||||||||.||.||.||.|||.|..
BPUM_0448___y 1851 GCTGACAAGACCTGAGCGTGATCCGCGCGATGAAGTACCAAAACCTCTTT 1900
BSNT_00811___ 1907 TGAAAACAGACGTCCTTCAGCTGGAAGATTTGAAAGAGGGAATGGAACTG 1956
||||||||||.||..|..|..||||.||.|||||..|.||||||||.|||
BPUM_0448___y 1901 TGAAAACAGATGTGTTGAAATTGGAGGACTTGAAGCAAGGAATGGAGCTG 1950
BSNT_00811___ 1957 CAGGGCACCGTGCGCAATGTAGTGGACTTCGGAGCGTTTGTTGATATCGG 2006
||.||.||.||..|.||.||.||.||||||||.||.||.||||||||.||
BPUM_0448___y 1951 CAAGGAACGGTAAGAAACGTCGTAGACTTCGGCGCATTCGTTGATATTGG 2000
BSNT_00811___ 2007 AGTCAAACAAGACGGGCTTGTGCATATCTCAAAATTGAGCAATCAATTCG 2056
.|||||.||.|||||||||||.|||||.||.||..|.|||||.|..||.|
BPUM_0448___y 2001 CGTCAAGCAGGACGGGCTTGTCCATATTTCTAAGCTCAGCAACCGTTTTG 2050
BSNT_00811___ 2057 TCAAGCATCCTCTTGATGTCGTATCTGTCGGCGATATTGTGACAGTTTGG 2106
|.|||||.||.|||||.||.|||||.||.||.||.||||||||.||.|||
BPUM_0448___y 2051 TAAAGCACCCGCTTGACGTTGTATCAGTTGGTGACATTGTGACTGTATGG 2100
BSNT_00811___ 2107 GTTGACGGCGTAGATGTACA---AAAAGGCAGAGTATCGCTGTCTATGGT 2153
||.|||..||| ||..|| |||||||.|.||..|.||.||.|||.|
BPUM_0448___y 2101 GTGGACTCCGT---TGACCAGGCAAAAGGCCGCGTTGCCCTCTCCATGCT 2147
BSNT_00811___ 2154 ------AAAATAA 2160
|.|||||
BPUM_0448___y 2148 GAAACCAGAATAA 2160
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