Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00802 and BPUM_0444

See Amino acid alignment / Visit BSNT_00802 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:34
# Commandline: needle
#    -asequence dna-align/BSNT_00802___rsbV.1.24716.seq
#    -bsequence dna-align/BPUM_0444___rsbV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00802___rsbV-BPUM_0444___rsbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00802___rsbV-BPUM_0444___rsbV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00802___rsbV
# 2: BPUM_0444___rsbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 347
# Identity:     236/347 (68.0%)
# Similarity:   236/347 (68.0%)
# Gaps:          34/347 ( 9.8%)
# Score: 731.5
# 
#
#=======================================

BSNT_00802___      1 ATGAATATAAATGTTGATGTGAAGCAAAACGAGAATGATATA---CAAGT     47
                     ||||||||...|||            |||.|||.||.|.|||   ||| .
BPUM_0444___r      1 ATGAATATGTCTGT------------AAAAGAGCATCAAATAGATCAA-A     37

BSNT_00802___     48 AAAC----ATT----GCA--GGAGAAATTGATGTATACTCAGCCCCGGTG     87
                     ||||    |||    .||  ||||||||.|||||.|||||.||.||...|
BPUM_0444___r     38 AAACGAAAATTAGTGTCAGTGGAGAAATCGATGTGTACTCTGCTCCTCAG     87

BSNT_00802___     88 CTTAGAGAGAAGCTCGTTCCTCTGGCAGAACAAGGAGCTGA-CTTAAGAA    136
                     ||.|||||.|..||..|.|||...||.||....||||...| |||.|| |
BPUM_0444___r     88 CTAAGAGAAACACTTATGCCTAAAGCCGAGGCGGGAGAGCATCTTGAG-A    136

BSNT_00802___    137 TTTGCCTGAAAGATGTCAGCTACATGGACAGTACCGGATTGGGCGTTTTT    186
                     |.||..||||.|||||.|..||.|||||.|||||.|||||.||.||.|||
BPUM_0444___r    137 TCTGTTTGAAGGATGTTACGTATATGGATAGTACAGGATTAGGTGTATTT    186

BSNT_00802___    187 GTAGGGACCTTTAAA--ATGGTGAAAAAACAAGGTGGTTCGCTGAAACTT    234
                     ||.|||...||||||  | |.|.|||||.| |||.||..|.||.||.|||
BPUM_0444___r    187 GTTGGGCTGTTTAAAGCA-GCTCAAAAAGC-AGGCGGAACACTAAAGCTT    234

BSNT_00802___    235 GAAAATCTT-TCTGAACGGCTGATCCGACTGTTTGACATTACAGGCTTGA    283
                     ||||| ||| ||.||.|||||..|..|..|||||||.|||||.||.||.|
BPUM_0444___r    235 GAAAA-CTTATCAGATCGGCTTGTAAGGTTGTTTGAAATTACTGGATTAA    283

BSNT_00802___    284 AGGACATCATTGATATTTCTGCAAAGTCAGAAGGTGGAGTGCAATGA    330
                     |||||||||||||.|||||||||||||||||.|||||.||.||||||
BPUM_0444___r    284 AGGACATCATTGACATTTCTGCAAAGTCAGAGGGTGGGGTACAATGA    330


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