Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00796 and BPUM_0438

See Amino acid alignment / Visit BSNT_00796 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:34
# Commandline: needle
#    -asequence dna-align/BSNT_00796___ydcD.1.24716.seq
#    -bsequence dna-align/BPUM_0438___ydcD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00796___ydcD-BPUM_0438___ydcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00796___ydcD-BPUM_0438___ydcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00796___ydcD
# 2: BPUM_0438___ydcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     210/288 (72.9%)
# Similarity:   210/288 (72.9%)
# Gaps:          12/288 ( 4.2%)
# Score: 723.0
# 
#
#=======================================

BSNT_00796___      1 TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAA     50
                     |||||||||||||||||||.||.|||||||||.||..|..||||.||.|.
BPUM_0438___y      1 TTGTCTGAATCCAGCGCAACAAACGAAATGAAGATTCGACTGCCGGAGAC     50

BSNT_00796___     51 CCTAGTAGCTGAATTGGATGGTGTAGC-GATGCGGGAGAAACGAAGCAGA     99
                     ..||.|..||||..|.||..|.||||| || ||.|||.||...||..|||
BPUM_0438___y     51 TTTAATGTCTGAGATCGAACGAGTAGCAGA-GCAGGATAAGGTAACAAGA     99

BSNT_00796___    100 AACGAACTGATATCACAAGCAGTGAGA-----GCATATGTCAGCGAACGA    144
                     ||.|||.||||.|..|.|||   ||.|     |.|||| || |.|||||.
BPUM_0438___y    100 AATGAATTGATCTACCGAGC---GACAAAAACGTATAT-TC-GTGAACGT    144

BSNT_00796___    145 ACAACTCGTCACAACCGTGATTTGATGAGACGCGGCTATATGGAAATGGC    194
                     |..|.|||.||.||.|||||.|.|||||||||||||||.|||||.|||||
BPUM_0438___y    145 AATATTCGACAAAATCGTGAATCGATGAGACGCGGCTACATGGAGATGGC    194

BSNT_00796___    195 GAAAATCAACCTGAATATTTCTTCTGAGGCTCACTTTGCGGAGTGCGAGG    244
                     ||||||.||.||||||||.|||||.|||||.||.|..||.||.|..||||
BPUM_0438___y    195 GAAAATTAATCTGAATATCTCTTCAGAGGCACAATACGCAGAATTTGAGG    244

BSNT_00796___    245 CTGAAACGACAGTTGAGCGCTTAGTCAGCGGAGGATAA    282
                     ||||.|..|||||||||||.|||||||||||.||.|||
BPUM_0438___y    245 CTGAGAATACAGTTGAGCGATTAGTCAGCGGGGGTTAA    282


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