Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00789 and BPUM_0433
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00789___ydbT.1.24716.seq
# -bsequence dna-align/BPUM_0433___ydbT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00789___ydbT-BPUM_0433___ydbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00789___ydbT-BPUM_0433___ydbT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00789___ydbT
# 2: BPUM_0433___ydbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1683
# Identity: 965/1683 (57.3%)
# Similarity: 965/1683 (57.3%)
# Gaps: 387/1683 (23.0%)
# Score: 2451.0
#
#
#=======================================
BSNT_00789___ 1 ---ATGTCTGAACCGAAACGCCTGCACCCGGCGGCAGTC---AT----TT 40
|||||||||||.|||||..|.||.| ||.|| || .|
BPUM_0433___y 1 ATGATGTCTGAACCAAAACGTGTACATC------CAATCTCGATGTTCAT 44
BSNT_00789___ 41 TGAATTT-------ATGCCATA-CCATTATTCAAACGATAAAAAATATCA 82
|||.||| |||||.|| |||| |||.|||||..|||
BPUM_0433___y 45 TGATTTTATATCAGATGCCGTATCCAT---------GATCAAAAACTTCA 85
BSNT_00789___ 83 TTCTGCCATTC--TTTTTTGTGTATA---TTGTCAATTCAA-----ACCA 122
|| |||| |||||.|||..|| ||||.||.||.| |.||
BPUM_0433___y 86 TT-----ATTCCTTTTTTCGTGCTTATTTTTGTGAACTCGAATTCGAGCA 130
BSNT_00789___ 123 TACTGTCCGTTTTTACGGA---GCCATTGCGCTCGGTGTGCTGTTCATCT 169
|.||||||||.|.| ..|||| ||.||||||||
BPUM_0433___y 131 -----TTCGTTTTTATGCATTTATCATT---CTTGGTGTGCT-------- 164
BSNT_00789___ 170 GGCTTGTAGCGGCAAGCATTATCAA----------ATGGAGAAGGTTTAC 209
.|||.|| .||.||||..|.|.|| |||||||.|.|||||
BPUM_0433___y 165 -TCTTTTA-TGGAAAGCTGTTTTAACCGTTTTAGCATGGAGACGCTTTAC 212
BSNT_00789___ 210 CTATCGAATTGAAGATGATGAATTTAGAATTGAAGAAGGC-TTATTTGTT 258
|||.||.||.|||||||||||||||.|..|.|||...||| |.| |.
BPUM_0433___y 213 CTACCGGATGGAAGATGATGAATTTCGCGTGGAATCGGGCGTCA----TC 258
BSNT_00789___ 259 ACGAAAAAG---CGATACATATCGATTGATCGGATTCAAACAATGAATAC 305
||.|||||| ..|||.||.|||.|.||.||.||||||||..|||||||
BPUM_0433___y 259 ACAAAAAAGAAAAAATATATTTCGTTAGAACGAATTCAAACGGTGAATAC 308
BSNT_00789___ 306 GAGCGCGGGCCTTGTCCAGCAAATCTTTAAGCTTGTGAAGC---TGCAAA 352
.||.|..||..||.|||||...||.||| |.|| ||..|| |.||||
BPUM_0433___y 309 AAGTGAAGGTATTTTCCAGAGGATTTTT--GGTT-TGGTGCGTGTTCAAA 355
BSNT_00789___ 353 TTGAAACAGCAGGCGGAGGCAAGGAGG---CAGAAGCCGTTCTTTCTGCT 399
|.||||||||.|||||| |..||.| |.||||....|||..|.||.
BPUM_0433___y 356 TCGAAACAGCTGGCGGA---ACAGACGGTCCGGAAGTGAGTCTGACGGCG 402
BSNT_00789___ 400 ATTTCTGTTGAAGAAGCGGAACGCATCAAAG-AAGCTGTCTTTAA---GA 445
|||.|....|.||||||||||| .||.|||| ||.|..|.||.|| ||
BPUM_0433___y 403 ATTACAAAAGCAGAAGCGGAAC-AATTAAAGCAATCGATTTTCAACCGGA 451
BSNT_00789___ 446 A-AAAAGC--GCA--AAGACGA----------GAAAATG---------AA 471
| |||||| ||| ||||.|| ||||||| .|
BPUM_0433___y 452 AGAAAAGCTTGCAGCAAGAAGAAATGGTGGATGAAAATGGAGGTACCCCA 501
BSNT_00789___ 472 CTTGAT------GAAGAACGGCTTGAACCTG----AAGAGGAGT---TGG 508
|.|||| |.||.||..| |||||| ||.||.|.| ||.
BPUM_0433___y 502 CATGATCCTCTGGCAGCACACC---AACCTGTAGAAAAAGAAATCAATGT 548
BSNT_00789___ 509 TTCCGGCCGTTGAGGTGCAAGAGCACTATCGCATGAACGCGA---AAGAA 555
||| |||.||.||| |.|| .||||
BPUM_0433___y 549 TTC----------------------CTACCGGATG---GGGATACCAGAA 573
BSNT_00789___ 556 TTGCTCTTGGCCGCTTCTACCTCCGGCGGAATCGGAGTCATTATCTC-CG 604
.||||.|||||.||..|.||.||..||||.|||||.||||||||.|| .|
BPUM_0433___y 574 CTGCTTTTGGCTGCGACCACATCAAGCGGGATCGGCGTCATTATTTCTGG 623
BSNT_00789___ 605 CTGTATTTGCACTTATTTCCCAGCTTGATGAAGTGCTGCCAATGGATTGG 654
.|||.||..||.||| ..|.||..|.||||||.|.||.||..||||..|
BPUM_0433___y 624 GTGTCTTGCCATTTA-CACACAAATAGATGAAATTCTTCCTTTGGACGG- 671
BSNT_00789___ 655 TTATTTGATAAA----TTTTCCTTCCTTCAG-CACGCCAGTATTGGTATT 699
.||.||.|| |||| |||..||.|| ||.||.|||.|||..|||
BPUM_0433___y 672 ---ATTCATCAAGCAGTTTT-CTTTTTTAAGTCATGCGAGTGTTGAGATT 717
BSNT_00789___ 700 TACGCGGTACTCGTTTTTATCGGTTTATTTATCGCCTGGATTTTCAGCAT 749
||.|||.|.|||.|.|||||.|...||||.||.||.||||||.|.||
BPUM_0433___y 718 TATGCGATTCTCATATTTATTGCCGTATTGATTGCATGGATTCTTAG--- 764
BSNT_00789___ 750 CGCGGGCATGATG------------TTTAGATACGCGAACTTTCAAATCA 787
||.|| ||.| |||.||||| |||.||..||
BPUM_0433___y 765 --------TGTTGGGGTAACAGCCCTTCA-ATATGCGAA-TTTTAACGCA 804
BSNT_00789___ 788 TAAA--AAAAGAGCAGGAACTGGTGATTTCAAGGGGAATTATTGAAAAAC 835
||| |||||.|.|.||..|..|.||..||||.||..|.||.||||..|
BPUM_0433___y 805 -AAACGAAAAGGGAAAGACATCATCATCACAAGAGGGCTCATCGAAAGGC 853
BSNT_00789___ 836 ATCAAGTCACGATTCCG-TTGCGAAAAATACAAGCCATTAAAATCAAAGA 884
|||||.|.||.|||||| ||||| |.|||.|||||..|.|||||||||||
BPUM_0433___y 854 ATCAAATGACCATTCCGCTTGCG-AGAATTCAAGCAGTGAAAATCAAAGA 902
BSNT_00789___ 885 AAATATCATTCG----CCAGCTTTTCGGATTTGTAACGGTGTCTATCGTC 930
||||||..|||| || |||| ||.||||..||||||....|.||.
BPUM_0433___y 903 AAATATTCTTCGTGAACC--CTTT--GGTTTTGCGACGGTGATGCTTGTG 948
BSNT_00789___ 931 AGCGCAGGAGG--CGGCGACCGGGAAAAAGAAGAAGGCGCTTTGACCATT 978
||.|||||||| |....|| |.||.|||||..|.||| ||.|.
BPUM_0433___y 949 AGTGCAGGAGGTTCTATTAC-----AGAAAAAGAAACCTCTT---CCGTC 990
BSNT_00789___ 979 CTCTTTCCAATGATTC---ATAAAAAAA------AGCT--TCCGTACATG 1017
.|.||||||.|||||| |.||||||| |.|| ||..|..||.
BPUM_0433___y 991 TTATTTCCACTGATTCGGAAGAAAAAAATCAATGAACTGCTCTCTCAATT 1040
BSNT_00789___ 1018 CTCCG------AACATTT--ACGCCGGAATATACGCTGGAA--GAAAACT 1057
|.|.| |.||||| | |||.||||.| ||| |||||..
BPUM_0433___y 1041 CACAGATGATTATCATTTGGA-GCCAGAATCT------GAATTGAAAAAG 1083
BSNT_00789___ 1058 GCCGACGCCTGCCGCGGCGCGCGTTGAAACGCTATTTG------TTCCGT 1101
| |.||...|||..|..|.||.|||||..|| |||.||
BPUM_0433___y 1084 G--------TACCAAAGCGTTCACTCAAGCGCTACCTGATCTCTTTCGGT 1125
BSNT_00789___ 1102 TCTGT--CATTTTTTCACTCTTTTTGATCATTC--CGTTAT-GTATC--T 1144
|.||| |||| || ||| || |||.|| .|||| |
BPUM_0433___y 1126 TTTGTGCCATT-----AC-----TTG-----TCGGCGTGATCCTATCTGT 1160
BSNT_00789___ 1145 TC--TTTCAGCCATGGGGCTATCTGTCAGTCATCCTGCTGCCGATAGAGT 1192
|| ||||.|||||||||.|||.||.||.||||.|.|||.||..|.|..|
BPUM_0433___y 1161 TCGTTTTCCGCCATGGGGGTATTTGGCACTCATTCCGCTTCCTCTTGCTT 1210
BSNT_00789___ 1193 TGCTCTTCGGCTATCTCGCGTATAAA----GAGGCTGCATGGACGATCAA 1238
||.|.||.||.|||.|.||.|||||| .||||| || ||||||||
BPUM_0433___y 1211 TGGTTTTTGGTTATTTAGCTTATAAACAATCAGGCT--AT--ACGATCAA 1256
BSNT_00789___ 1239 CGGGGACCGTC------TTCAGCTGACGTCTAGATTTATAGGCAGAACAA 1282
.| .|| ||||.|||||.||.|||...||.||||.|||.|
BPUM_0433___y 1257 AG------ATCCATTGATTCAACTGACATCAAGAGGCATTGGCAAAACCA 1300
BSNT_00789___ 1283 CCGCCATTGTACTGAAAAAACGAATGCAGGTCTGCAAGTTCAGCCAATCC 1332
|.|..|||||..|||.||||||||||||...||..|.|.|.|..|||||.
BPUM_0433___y 1301 CTGGAATTGTCTTGAGAAAACGAATGCAAAACTATACGATGACACAATCA 1350
BSNT_00789___ 1333 TATTTCCAAAAGAAAGGCC-----GCTTGTAT----ACCATTTCTACTTC 1373
|..|||||||||||||||| ||..|||| |||.||
BPUM_0433___y 1351 TTCTTCCAAAAGAAAGGCCGAGTGGCGAGTATTCACACCTTT-------- 1392
BSNT_00789___ 1374 AGTGAAATCATC----------GAGCCATATGGAAGAATTAACGGTGAGG 1413
||||||||.|| ||..|.|.|||...|..|.||..||||
BPUM_0433___y 1393 -GTGAAATCCTCTGCGTTGCTTGATTCCTTTGGTGTACATCACCTTGAG- 1440
BSNT_00789___ 1414 GATGTAGGTGAAGAGGATGCAGCCTTCA-TTTTAA---ACTGGTACTCAT 1459
|||||.||||||| || .|.||| |.|||||.||.|
BPUM_0433___y 1441 ---------GAAGAAGATGCAG----CACGTGTAATGGATTGGTATTCGT 1477
BSNT_00789___ 1460 ATGAAAAAGCGGACGGTTAA------------- 1479
|||||||| ||
BPUM_0433___y 1478 ATGAAAAA----------AATAAATCTTCTTAA 1500
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