Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00784 and BPUM_0428
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00784___murF.1.24716.seq
# -bsequence dna-align/BPUM_0428___murF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00784___murF-BPUM_0428___murF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00784___murF-BPUM_0428___murF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00784___murF
# 2: BPUM_0428___murF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1567
# Identity: 915/1567 (58.4%)
# Similarity: 915/1567 (58.4%)
# Gaps: 323/1567 (20.6%)
# Score: 2459.0
#
#
#=======================================
BSNT_00784___ 1 ATGAAGAAGGACACTGCCGGTAAAAGGGCAGTGTTTTTTCCCGTATATAC 50
BPUM_0428___m 0 -------------------------------------------------- 0
BSNT_00784___ 51 AAAAGAAAGAGAGGGACCTTACTTGATTAAGCGAACAGTAAAAAACATTG 100
.||||.||.||.|||||.|||.|.||.|
BPUM_0428___m 1 ----------------------ATGATCAAACGTACAGTGAAACAAATCG 28
BSNT_00784___ 101 CCGAAATGGTTAAAGGCACACTAACAAATC----------CGCAATATGA 140
||.||||||.|...||.||||||.|.|||| || |.||
BPUM_0428___m 29 CCCAAATGGCTGGTGGGACACTATCTAATCAAGCTTTTGGCG----AAGA 74
BSNT_00784___ 141 ACAAACAGTCATTCATGGAGTGGCAACCGATACAAGAAAACTGGAACAA- 189
.||| |||||.||||||.|.||.||||||.||||| |.|.|||
BPUM_0428___m 75 GCAA------ATTCACGGAGTGACGACAGATACACGAAAA--GTATCAAA 116
BSNT_00784___ 190 -----CATCAGCTCTTCATTCCGTTGAAAGGGGAACGTTTTGACGGCCAC 234
||| |.||.||.||..|.|..||.||||.||||.|.||.|||
BPUM_0428___m 117 AGGTGCAT----TGTTTATCCCCCTAATTGGAGAACATTTTAATGGTCAC 162
BSNT_00784___ 235 ACTTTTG----TGGAGCAGGCTTTTGAAGCTGGTGTAGCG---GCTGTTC 277
||.|||| |..||||| ||.|||| ||.|||| |||||||
BPUM_0428___m 163 ACATTTGCTTCTAAAGCAG-----TGGAGCT--TGGAGCGGCAGCTGTTC 205
BSNT_00784___ 278 TTTGGGATCGGTCAGTACCAAATCCGCCCGAGAA----TCACGCCGTCAT 323
|||||.|||....||.|.|.|||||.|| |||| | || |.|||||
BPUM_0428___m 206 TTTGGAATCAAAAAGAAACCAATCCACC--AGAAGGCGT-AC-CTGTCAT 251
BSNT_00784___ 324 TTTAGTGGATGATACCCTTACTGCACTTCAGCAGCTTGCAAAAGCCTATT 373
|.|.||.||.|||||.||..|.||.||||||||..|.||||||.|.||||
BPUM_0428___m 252 TCTTGTCGACGATACACTGGCAGCCCTTCAGCAATTGGCAAAATCGTATT 301
BSNT_00784___ 374 T----GCAGGAGCTTGGCACGCGTGTCATCGGAGTAACCGGAAGCAATGG 419
| |.||.| ..|.|.|||||..||||..|.||.|||||.||.||
BPUM_0428___m 302 TAAAAGAAGAA----AACCCTCGTGTTGTCGGTATTACAGGAAGTAACGG 347
BSNT_00784___ 420 CAAAACGACAACAAAAGATATGATTCA---CGCCGTACTGGGGACCCA-- 464
.|||||.||.||.|||||||||||||| ||.|.||| |..||
BPUM_0428___m 348 GAAAACCACGACGAAAGATATGATTCATTCCGTCTTAC-----AAACAAC 392
BSNT_00784___ 465 GTACCGCGTCCACAAAACTGGAGGAAACTTCAATAATCATATCGGTTTGC 514
|||.|..||.||.|||||.|..||.||.||.|||||||||||||||.|.|
BPUM_0428___m 393 GTATCAAGTTCATAAAACAGACGGTAATTTTAATAATCATATCGGTCTTC 442
BSNT_00784___ 515 CGCTGACAGTTTTAGCGATGCCTGAAAA--TACGGAGATCGCCGTATTGG 562
||||.||..||.|..|.||||| |||| |||.||||||||.|||||.|
BPUM_0428___m 443 CGCTCACCATTCTTTCAATGCC--AAAAGGTACAGAGATCGCTGTATTAG 490
BSNT_00784___ 563 AGATGGGAATGAGCGCCAAAGGAGAAATTGACCTCTTG----AGCCGCCT 608
|||||||.||||||||.|||||.|||||.||..|.||| | |||
BPUM_0428___m 491 AGATGGGCATGAGCGCAAAAGGCGAAATCGAGTTTTTGTCAAA----CCT 536
BSNT_00784___ 609 GGCAAACCCGGATGCGGCAGTGATTACGAATATCGGCGAATCGCATATGC 658
.||..|.||.|||||.|||||.||.||.||||||||.||.||.|||||||
BPUM_0428___m 537 AGCTGAGCCTGATGCAGCAGTCATCACCAATATCGGAGAGTCTCATATGC 586
BSNT_00784___ 659 AAGACCTTGGCTCTAGAGAGGGCATCGCGGAGGCGAAGCTTGAAATCATT 708
||||..|.||.||.|||||.|.|||.||.||.||.||...||||||.|..
BPUM_0428___m 587 AAGATTTAGGATCAAGAGAAGCCATTGCTGATGCAAAATGTGAAATTACA 636
BSNT_00784___ 709 AACGGGCTTAAAGAAGACGGAGTGTTGATTTA-TA--TCGGGGACGAACC 755
||.|||.|.|||||.||.||....| |||| || |.||.||.|||||
BPUM_0428___m 637 AAAGGGTTGAAAGAGGATGGCACCT---TTTACTACTTAGGAGATGAACC 683
BSNT_00784___ 756 ---GCTTCTTCAAAATGC-ATACAGCT------GCCAGACGAAAACGTAC 795
|.|||...|.|..|| |..||.|| ||.|| .||||||.|..
BPUM_0428___m 684 TTTGATTCGCGAGAGAGCGACTCAACTTTCTCAGCAAG-TGAAAACCTTT 732
BSNT_00784___ 796 GG-GACGGGAGCGCATA-ATGATTATCAGCTTCAGG------ATGTCAGC 837
|| || ||| | ||||.|.|.|..||.||| ||.|.|.|
BPUM_0428___m 733 GGAGA----AGC----AGATGACTGTGATATTAAGGTAACGCATATTAAC 774
BSNT_00784___ 838 CAGAGTGAGGAAGGAACCCATTTTACAA--TCAAAGGGAT-----AGAAA 880
|||..||..||||||||..|.||| ||| |.||.||.|| ||
BPUM_0428___m 775 CAGCTTGCAGAAGGAACTGAATTT-CAAGTTGAAGGGTATGCTCAAG--- 820
BSNT_00784___ 881 ACACGTTTTTTATTCCGATACTCGGCAAGCACAATGTGATGAACGCCATG 930
.||||.|.|||||..||.|.||.||.||.|||||||.|||.|||.|.
BPUM_0428___m 821 ---GGTTTCTCATTCCTGTATTAGGGAAACATAATGTGAAGAATGCCCTT 867
BSNT_00784___ 931 GCAGCGATTGCTGCAGG--GGCTTATTTTGGCATCACGCCTGAGGGTGCG 978
||.||.||||||..||| .|| ||||.| |.||||..|...|
BPUM_0428___m 868 GCTGCCATTGCTATAGGTCAGC--ATTTCG-------GACTGAATGAAAG 908
BSNT_00784___ 979 GCAA-------AAGGACTGA-GCGGCCTAAAGGTAACCGGGATGAGACTT 1020
.||| |||||||.| ||...| ||||.||||.||.|||.|.|||
BPUM_0428___m 909 ACAAATCGCCCAAGGACTCATGCAAAC-AAAGTTAACAGGAATGCGTCTT 957
BSNT_00784___ 1021 GAACTCATCAAAACAGACAGCGGCCTTTCGATAATCAATGACGCTTATAA 1070
|||||..|.||||||||.|..||..||.|..|.||||||||.||.|||||
BPUM_0428___m 958 GAACTGTTTAAAACAGAAAAAGGAATTACTGTTATCAATGATGCGTATAA 1007
BSNT_00784___ 1071 TGCGAGCCCGACTTCCATGAAAGCTGCAATTCA-ATTG--ACAGAAAGCC 1117
|||.|||||.|||||.|||||||||||.|||.| .||| ..|||.|
BPUM_0428___m 1008 TGCAAGCCCTACTTCTATGAAAGCTGCTATTGATCTTGTAGGAGATA--- 1054
BSNT_00784___ 1118 TCGAAGGCTACGGCAAA-AAAATGCTCGTGCTCGGTGATATGCTTGAACT 1166
|.||.||||.| ||||| ...||.||.||.||.||.||.|||||.||..|
BPUM_0428___m 1055 TGGACGGCTTC-GCAAATCGCATTCTTGTCCTTGGAGACATGCTAGAGAT 1103
BSNT_00784___ 1167 CG---GCGATCTTGAAGAAACGTTCCATAAAG-AGTGCGGCGCTGTGATC 1212
.| |||| .||||||||.|..|||.|.| |.|..|.|||| ..|||
BPUM_0428___m 1104 GGGTAGCGA---AGAAGAAACATATCATTATGAACTAGGCCGCT-ACATC 1149
BSNT_00784___ 1213 AGCCCTGATAAAATTGACCGCGTCTTTACGTACGGAAAAC----TGGGAG 1258
|..|||||....|||||.|..||..|.|||||.|| | |.||.|
BPUM_0428___m 1150 AAGCCTGAATTTATTGATCATGTGATGACGTATGG----CCGTTTAGGTG 1195
BSNT_00784___ 1259 CTTTTATCGCGGAAGGCGCCCTGAAACAATT---TGAGAAAGACCGCGTC 1305
|.||.|||||.|||||.||...||||..||| |||.| ||||
BPUM_0428___m 1196 CATTCATCGCTGAAGGAGCAAAGAAATCATTCGGTGATA-----CGCG-- 1238
BSNT_00784___ 1306 AG-----CCATT-----AC--------ACTG-AGAAAAAAGATCTCCTCC 1336
|| .|||| || |||| |||||||| |
BPUM_0428___m 1239 AGTGTTCTCATTTATGGACAAAGAGGAACTGAAGAAAAAA---------C 1279
BSNT_00784___ 1337 AAGCTGTGAAGGAAAACGCATCAAAAGG------CGATTTGATTTTATTC 1380
..|||| |||.|.| ||| .|||.||.|..|..||
BPUM_0428___m 1280 TTGCTG---------ACGTAGC---AGGTCCTGATGATGTGGTCCTTGTC 1317
BSNT_00784___ 1381 AAAGCGTCCAGAGGTATGAAGCTT-GAAGAAATCGTTAAAGATTTAATAG 1429
|||||.||..|.||.||| ||.|| ||||||.||.|||
BPUM_0428___m 1318 AAAGCTTCACGCGGCATG-AGATTAGAAGAAGTCATTA------------ 1354
BSNT_00784___ 1430 AGAGCCCGCTTTCATAA 1446
|.||..| ||||
BPUM_0428___m 1355 -----CTGCACT-ATAA 1365
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