Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00781 and BPUM_0426

See Amino acid alignment / Visit BSNT_00781 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:33
# Commandline: needle
#    -asequence dna-align/BSNT_00781___ydbP.1.24716.seq
#    -bsequence dna-align/BPUM_0426___ydbP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00781___ydbP-BPUM_0426___ydbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00781___ydbP-BPUM_0426___ydbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00781___ydbP
# 2: BPUM_0426___ydbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 338
# Identity:     228/338 (67.5%)
# Similarity:   228/338 (67.5%)
# Gaps:          34/338 (10.1%)
# Score: 787.0
# 
#
#=======================================

BSNT_00781___      1 ATGAAAAAAATCACAACAAACGAACAATTTAATGAACTGATTCAATCTGA     50
                     .|||||||||||||||..|..||||||||.||||||.|.|||||||||||
BPUM_0426___y      1 TTGAAAAAAATCACAAGTACTGAACAATTCAATGAAATCATTCAATCTGA     50

BSNT_00781___     51 TAAAGAAATCATTGTAAAGTTTTATGCTGATTGGTGCCCAGACTGCACAC    100
                     .||||||.||||.||.||.||.|.|||....|||||.||.|||||.|||.
BPUM_0426___y     51 CAAAGAAGTCATCGTTAAATTCTTTGCAACATGGTGTCCTGACTGTACAA    100

BSNT_00781___    101 GCATGAATATGTTCATCGGCGATATTTTGGAAGAGTA----CAACCAAAA    146
                     |.|||.|.||||||||....||.||.||.||.|.|||    ||.|    |
BPUM_0426___y    101 GAATGGACATGTTCATTCCAGACATCTTAGAGGCGTATGCTCACC----A    146

BSNT_00781___    147 CGATTGGTATGAGCTGAATAAGGACGAGCTTCCTGACCTGGCTGAAAAAT    196
                     .||.||||.|||..|.||.||.||.||..|.|||||.||.||.||||..|
BPUM_0426___y    147 TGAATGGTTTGAAATAAACAAAGATGATTTCCCTGAACTAGCAGAAACGT    196

BSNT_00781___    197 ACCAAGTAATGGGCATTCCCAGCCTGCTTATTTTCAAGAACGGTGAAAAA    246
                     |.||.||.|||||.|||||.||||||.|.||||||||.||.||.||||||
BPUM_0426___y    197 ATCAGGTCATGGGTATTCCAAGCCTGTTAATTTTCAAAAATGGCGAAAAA    246

BSNT_00781___    247 ACAGCTCACCTTCACAGCGCCAATGCCAAAACGCCTGAAGAAGTGACTGA    296
                     ||||.|||..|.|||||.||.||.||.|||.|.||||||||||||||.||
BPUM_0426___y    247 ACAGGTCATTTACACAGTGCAAACGCAAAATCACCTGAAGAAGTGACAGA    296

BSNT_00781___    297 ATTT-------------TTATCTGAACATATAAGCTAA    321
                     .|||             || |||.||            
BPUM_0426___y    297 GTTTCTTCAAGAGCACGTT-TCTTAA------------    321


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