Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00772 and BPUM_0423
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00772___ydbK.1.24716.seq
# -bsequence dna-align/BPUM_0423.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00772___ydbK-BPUM_0423.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00772___ydbK-BPUM_0423.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00772___ydbK
# 2: BPUM_0423
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 866
# Identity: 490/866 (56.6%)
# Similarity: 490/866 (56.6%)
# Gaps: 196/866 (22.6%)
# Score: 1109.5
#
#
#=======================================
BSNT_00772___ 1 TTGTCTAAATTAATTTGGAATGAACATATGAAACTTTTTAATCGGAAGGT 50
.||..|.||.|.||...||||||.||||..|||.|..|.||....|||.|
BPUM_0423 1 ATGCTTCAACTCATCAAGAATGAGCATAAAAAAATGATGAAGAAAAAGAT 50
BSNT_00772___ 51 CACTTTGGTTTCCCTTATCCTGATGGCTGTCTTTCAATTCTTCATGGCAT 100
.||.||..|..|.|||...|||||.|.|||.||||||||....||||| |
BPUM_0423 51 TACGTTCATCGCACTTGGACTGATCGTTGTGTTTCAATTGGCGATGGC-T 99
BSNT_00772___ 101 TGATCATT-AAACGGATTGTCAT---CAG---TGCCGGAACAGA---TGA 140
..|.|||| ||||| .||||| .|| ||..|||..||| ||
BPUM_0423 100 CTAGCATTGAAACG---AGTCATTTCTAGTTTTGGTGGACAAGACACTG- 145
BSNT_00772___ 141 AAACTTCATCGGC----TATTTATCGTAT---ACACCGAGCCTGAAC--- 180
|| || |||||..|.||| ||| |||
BPUM_0423 146 ----TT-----GCCAATTATTTTGCTTATTCCACA---------AACGTC 177
BSNT_00772___ 181 ------ATTTTGC-------TGCAGGCTTTAACGATCGTAATTGCAGCAA 217
|||||.| ||||| |.||.||||..||.|
BPUM_0423 178 GTATTTATTTTACAGGTGCTTGCAG----------TTGTCATTGGCGCGA 217
BSNT_00772___ 218 CAATTG-TTTCGATGGAATTTGATAAAAAG-ACGATCAAATTTTTGCTCA 265
| .||| |.||.|..||||||.| |||||| ||||||||.|||||..|.|
BPUM_0423 218 C-CTTGATCTCAACAGAATTTCA-AAAAAGAACGATCAAGTTTTTATTGA 265
BSNT_00772___ 266 TTCGTCCGGTTAAACGCCAAA---AGGTCT-----TTT---GGTCAAAAT 304
|.||.| ||||| ||| || ||| .||||||||
BPUM_0423 266 TACGGC----------CCAAAACTAGG-CTGCAAATTTACCTGTCAAAAT 304
BSNT_00772___ 305 TAATCACA---GTCGTGATGGTCAGCTTCTATTTGTATTTGGCATACTAC 351
..|||||| ||..|||.||||| |||||||| |||| |..|..
BPUM_0423 305 ACATCACACTTGTGCTGAAGGTCA---TCTATTTG--TTTG---TTTTTT 346
BSNT_00772___ 352 ATTCTG-----GCATTATTATTCGGTCTCGTGTTTTTTGGCACATCGGTG 396
|||.|| ||.||..||||.||.||..|.||.||||| .
BPUM_0423 347 ATTATGTAATTGCTTTCCTATTTGGCCTTATTTTCTTTGG---------T 387
BSNT_00772___ 397 ACTGC----GGAATCAAA------GAC----ATTGCTGGTCA--ACACTT 430
||||| | ||.||| ||| ||| ||| |.||.|
BPUM_0423 388 ACTGCTTTTG--ATGAAAGTTCGGGACGCTTATT-----TCAGCATACGT 430
BSNT_00772___ 431 TGGCGCTGATCGGGTCAAACTGGCTTGAAGCTG-TAATGATGGGATTATT 479
|.||..|||||||.||..|.|||.|.|||| || |.|||||||.|...||
BPUM_0423 431 TTGCTGTGATCGGATCTCAGTGGGTGGAAG-TGTTGATGATGGCAAGCTT 479
BSNT_00772___ 480 CGGGCTGCTT-----TGTTCTTC-GC-TGTTCCGCAACAGCGCGGTAGCA 522
| |||| ||||| | || ||||..|.||||||...||.||.
BPUM_0423 480 C-----GCTTTTATGTGTTC--CAGCTTGTTTAGAAACAGCCTCGTTGCG 522
BSNT_00772___ 523 GTTGTTGTTTCTTTTGTCGTTTTATACGGAGCGAGTACACTTGTTCAGCT 572
.||||....||.|||.|.||||||||.|..||.|...||||||| ||.
BPUM_0423 523 CTTGTGACCTCGTTTTTTGTTTTATATGCGGCTAAATCACTTGT---GCC 569
BSNT_00772___ 573 CATGAAGT---TGTTTGAAAACAAGTGGGGCAGCTTTTTGCTTTTTGCGA 619
.||.|.|| |.||.|||||..|||||||.|...|..|.||||||||.|
BPUM_0423 570 TATTATGTCTCTTTTAGAAAATCAGTGGGGGAAAATCCTACTTTTTGCTA 619
BSNT_00772___ 620 ACACAGACTTTACGCAATACGGAAGC------GGAGAGACAGCGTTGTTT 663
|.||.||||||||.||.||| ||| |||..|.||.| .||
BPUM_0423 620 ATACGGACTTTACTCAGTAC---AGCTTTCAAGGACCGCCACC----CTT 662
BSNT_00772___ 664 TCA-GGCATGACGCCATTG--TTCTCAATTGGAATTCTCATCATACATGC 710
.|| |||||||..||.||| |||||.|| |.||..||...||
BPUM_0423 663 CCATGGCATGAGTCCTTTGTTTTCTCTAT--------TTATGGTAGGGGC 704
BSNT_00772___ 711 -CATATTCTTCATCGTTGTT-----GGCTGGTGGTGC--TTCTGTAAACG 752
|||.||.|| .||.||||| ||||.| |||.| ||.||.||.||
BPUM_0423 705 GCATTTTGTT-TTCTTTGTTGGAACGGCTTG-GGTTCTTTTTTGGAAGCG 752
BSNT_00772___ 753 GGATGTTCGGGTCTAA 768
.|||||....||.|||
BPUM_0423 753 CGATGTAAATGTGTAA 768
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