Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00772 and BPUM_0423

See Amino acid alignment / Visit BSNT_00772 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:32
# Commandline: needle
#    -asequence dna-align/BSNT_00772___ydbK.1.24716.seq
#    -bsequence dna-align/BPUM_0423.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00772___ydbK-BPUM_0423.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00772___ydbK-BPUM_0423.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00772___ydbK
# 2: BPUM_0423
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 866
# Identity:     490/866 (56.6%)
# Similarity:   490/866 (56.6%)
# Gaps:         196/866 (22.6%)
# Score: 1109.5
# 
#
#=======================================

BSNT_00772___      1 TTGTCTAAATTAATTTGGAATGAACATATGAAACTTTTTAATCGGAAGGT     50
                     .||..|.||.|.||...||||||.||||..|||.|..|.||....|||.|
BPUM_0423          1 ATGCTTCAACTCATCAAGAATGAGCATAAAAAAATGATGAAGAAAAAGAT     50

BSNT_00772___     51 CACTTTGGTTTCCCTTATCCTGATGGCTGTCTTTCAATTCTTCATGGCAT    100
                     .||.||..|..|.|||...|||||.|.|||.||||||||....||||| |
BPUM_0423         51 TACGTTCATCGCACTTGGACTGATCGTTGTGTTTCAATTGGCGATGGC-T     99

BSNT_00772___    101 TGATCATT-AAACGGATTGTCAT---CAG---TGCCGGAACAGA---TGA    140
                     ..|.|||| |||||   .|||||   .||   ||..|||..|||   || 
BPUM_0423        100 CTAGCATTGAAACG---AGTCATTTCTAGTTTTGGTGGACAAGACACTG-    145

BSNT_00772___    141 AAACTTCATCGGC----TATTTATCGTAT---ACACCGAGCCTGAAC---    180
                         ||     ||    |||||..|.|||   |||         |||   
BPUM_0423        146 ----TT-----GCCAATTATTTTGCTTATTCCACA---------AACGTC    177

BSNT_00772___    181 ------ATTTTGC-------TGCAGGCTTTAACGATCGTAATTGCAGCAA    217
                           |||||.|       |||||          |.||.||||..||.|
BPUM_0423        178 GTATTTATTTTACAGGTGCTTGCAG----------TTGTCATTGGCGCGA    217

BSNT_00772___    218 CAATTG-TTTCGATGGAATTTGATAAAAAG-ACGATCAAATTTTTGCTCA    265
                     | .||| |.||.|..||||||.| |||||| ||||||||.|||||..|.|
BPUM_0423        218 C-CTTGATCTCAACAGAATTTCA-AAAAAGAACGATCAAGTTTTTATTGA    265

BSNT_00772___    266 TTCGTCCGGTTAAACGCCAAA---AGGTCT-----TTT---GGTCAAAAT    304
                     |.||.|          |||||   ||| ||     |||   .||||||||
BPUM_0423        266 TACGGC----------CCAAAACTAGG-CTGCAAATTTACCTGTCAAAAT    304

BSNT_00772___    305 TAATCACA---GTCGTGATGGTCAGCTTCTATTTGTATTTGGCATACTAC    351
                     ..||||||   ||..|||.|||||   ||||||||  ||||   |..|..
BPUM_0423        305 ACATCACACTTGTGCTGAAGGTCA---TCTATTTG--TTTG---TTTTTT    346

BSNT_00772___    352 ATTCTG-----GCATTATTATTCGGTCTCGTGTTTTTTGGCACATCGGTG    396
                     |||.||     ||.||..||||.||.||..|.||.|||||         .
BPUM_0423        347 ATTATGTAATTGCTTTCCTATTTGGCCTTATTTTCTTTGG---------T    387

BSNT_00772___    397 ACTGC----GGAATCAAA------GAC----ATTGCTGGTCA--ACACTT    430
                     |||||    |  ||.|||      |||    |||     |||  |.||.|
BPUM_0423        388 ACTGCTTTTG--ATGAAAGTTCGGGACGCTTATT-----TCAGCATACGT    430

BSNT_00772___    431 TGGCGCTGATCGGGTCAAACTGGCTTGAAGCTG-TAATGATGGGATTATT    479
                     |.||..|||||||.||..|.|||.|.|||| || |.|||||||.|...||
BPUM_0423        431 TTGCTGTGATCGGATCTCAGTGGGTGGAAG-TGTTGATGATGGCAAGCTT    479

BSNT_00772___    480 CGGGCTGCTT-----TGTTCTTC-GC-TGTTCCGCAACAGCGCGGTAGCA    522
                     |     ||||     |||||  | || ||||..|.||||||...||.||.
BPUM_0423        480 C-----GCTTTTATGTGTTC--CAGCTTGTTTAGAAACAGCCTCGTTGCG    522

BSNT_00772___    523 GTTGTTGTTTCTTTTGTCGTTTTATACGGAGCGAGTACACTTGTTCAGCT    572
                     .||||....||.|||.|.||||||||.|..||.|...|||||||   ||.
BPUM_0423        523 CTTGTGACCTCGTTTTTTGTTTTATATGCGGCTAAATCACTTGT---GCC    569

BSNT_00772___    573 CATGAAGT---TGTTTGAAAACAAGTGGGGCAGCTTTTTGCTTTTTGCGA    619
                     .||.|.||   |.||.|||||..|||||||.|...|..|.||||||||.|
BPUM_0423        570 TATTATGTCTCTTTTAGAAAATCAGTGGGGGAAAATCCTACTTTTTGCTA    619

BSNT_00772___    620 ACACAGACTTTACGCAATACGGAAGC------GGAGAGACAGCGTTGTTT    663
                     |.||.||||||||.||.|||   |||      |||..|.||.|    .||
BPUM_0423        620 ATACGGACTTTACTCAGTAC---AGCTTTCAAGGACCGCCACC----CTT    662

BSNT_00772___    664 TCA-GGCATGACGCCATTG--TTCTCAATTGGAATTCTCATCATACATGC    710
                     .|| |||||||..||.|||  |||||.||        |.||..||...||
BPUM_0423        663 CCATGGCATGAGTCCTTTGTTTTCTCTAT--------TTATGGTAGGGGC    704

BSNT_00772___    711 -CATATTCTTCATCGTTGTT-----GGCTGGTGGTGC--TTCTGTAAACG    752
                      |||.||.|| .||.|||||     ||||.| |||.|  ||.||.||.||
BPUM_0423        705 GCATTTTGTT-TTCTTTGTTGGAACGGCTTG-GGTTCTTTTTTGGAAGCG    752

BSNT_00772___    753 GGATGTTCGGGTCTAA    768
                     .|||||....||.|||
BPUM_0423        753 CGATGTAAATGTGTAA    768


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