Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00765 and BPUM_0417

See Amino acid alignment / Visit BSNT_00765 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:32
# Commandline: needle
#    -asequence dna-align/BSNT_00765___dctS.1.24716.seq
#    -bsequence dna-align/BPUM_0417___dctS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00765___dctS-BPUM_0417___dctS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00765___dctS-BPUM_0417___dctS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00765___dctS
# 2: BPUM_0417___dctS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1695
# Identity:    1055/1695 (62.2%)
# Similarity:  1055/1695 (62.2%)
# Gaps:         318/1695 (18.8%)
# Score: 3341.5
# 
#
#=======================================

BSNT_00765___      1 ATGAACAAAAAGAAGCTCTCAATCCGTTGGAAAATCACGATCTTATCCTA     50
                                                                       
BPUM_0417___d      0 --------------------------------------------------      0

BSNT_00765___     51 TATACTCGTCATTTTCTCCTTTTTGATCGGCGGCATTGTGCTCATCGGCA    100
                                                                       
BPUM_0417___d      0 --------------------------------------------------      0

BSNT_00765___    101 ACATTCAGCATACAGAGGAGCGGGAGCTGAAAAAGCGGCTGATGAATACG    150
                                                              |||||.||.
BPUM_0417___d      1 -----------------------------------------ATGAACACA      9

BSNT_00765___    151 GCCCGGACGGTGTCAGAGATGACAGAAGTGAAAG-AAGCCTTGGC-GCGA    198
                     ||..|.||.|||.|.|||||||..||.|| |||| |.||.||.|| |   
BPUM_0417___d     10 GCGAGAACAGTGGCTGAGATGAATGAGGT-AAAGCAGGCGTTAGCTG---     55

BSNT_00765___    199 AAAAAACAAACAGAAGCTG------TTCGCCATGCGGTTGAAGAAATCAG    242
                     |..||||||| .|||..||      |.|..|||||..|.||.||.||..|
BPUM_0417___d     56 ATCAAACAAA-GGAACGTGACCGATTACAGCATGCCATCGAGGAGATTCG    104

BSNT_00765___    243 GATGATTAATGAAGCAGACTATATTGTCGTCATGGATATGAATCACATCC    292
                     |||.|||.|.||.||.|||||.||||||||||||||||||.||||..|..
BPUM_0417___d    105 GATTATTCAAGATGCTGACTACATTGTCGTCATGGATATGGATCATGTGA    154

BSNT_00765___    293 GA-TATACGCATCCTGTCAGCACAAGCATCGGCAAAAAATCA-------G    334
                     || || ||||||||.||.|...||||.||.||       |||       |
BPUM_0417___d    155 GACTA-ACGCATCCAGTGAAAGCAAGGATTGG-------TCAGCGCTCGG    196

BSNT_00765___    335 AAGGTGCAGACGAGGAGGCAGCGTTTGCGGAGCACATTTATTTCTCTGAA    384
                     |.||..||||.||.|||.|.||.|||||.|||||||||||||||||.|||
BPUM_0417___d    197 AGGGGACAGATGAAGAGCCTGCTTTTGCTGAGCACATTTATTTCTCAGAA    246

BSNT_00765___    385 GCAAAGGGCGAGATCGGCACGGCGGTTCGCGCTTTTTATCCGGTTAAGGA    434
                     |||.||||.|||.|.||.||.||..|..|.||.||||||||.||.|||||
BPUM_0417___d    247 GCAGAGGGAGAGCTTGGGACCGCCATCAGAGCCTTTTATCCAGTGAAGGA    296

BSNT_00765___    435 TCAAGACTTGAACCAAATAGGCGTGGTGCTTGTCGGAAAAACGCTGCCGG    484
                     |.|..|.||.||.||||.|||.||.||.|||||.||.|.|||.|||||..
BPUM_0417___d    297 TGATCAATTTAATCAAACAGGGGTCGTCCTTGTTGGGAGAACACTGCCAA    346

BSNT_00765___    485 G---GATCGCTGACATCCTGCTTCATT--------TAAAGCGTGATATCG    523
                     |   ||||   ||.||        |||        |.|||||.||||||.
BPUM_0417___d    347 GTATGATC---GATAT--------ATTAGGAGAAATGAAGCGAGATATCC    385

BSNT_00765___    524 CCTTCATCGTTGTGCTGACACTCGGCTTCGGCCTTGCTGGTTCCTTTTTG    573
                     .|.|.||..|..||||.||.|||.||||.||.||||..|||||.|||||.
BPUM_0417___d    386 TCATGATTCTCTTGCTCACGCTCAGCTTTGGGCTTGTCGGTTCATTTTTA    435

BSNT_00765___    574 CTGGCCCGCCATATCAAAAAACAAATGTTTCAGCTTGAACCCCATGAGAT    623
                     ||.||.||.|||||.|||.|.|||||||||.||||.||.||.||||||||
BPUM_0417___d    436 CTTGCTCGTCATATTAAACAGCAAATGTTTAAGCTGGAGCCGCATGAGAT    485

BSNT_00765___    624 TGTCCGAATG-TATGAAGAACGGACAGCGACGTTTCACTCGATGAATGAA    672
                     ||||.||||| || ||.||.||.||.||.||.||||||||.||.||||||
BPUM_0417___d    486 TGTCAGAATGCTA-GAGGAGCGCACCGCAACCTTTCACTCTATTAATGAA    534

BSNT_00765___    673 GGGGTGATTGCCATTGACAATCGTCTCATCATTACGATTTTCAATGAAAA    722
                     |||||.||.||||||||.||||..|.|||.|||||.|||||.||||||||
BPUM_0417___d    535 GGGGTTATCGCCATTGATAATCAGCACATGATTACCATTTTTAATGAAAA    584

BSNT_00765___    723 AGCGAAACAGATCTTTGAAGTG---CAGGGGGATCTGATCGGCAAGGTGA    769
                     .|||||.||.||.|||  ||||   || ||||||.|..|.||||||...|
BPUM_0417___d    585 GGCGAAGCAAATATTT--AGTGTGACA-GGGGATGTCGTAGGCAAGAATA    631

BSNT_00765___    770 TTTGGGAGGTTCT--------CAAGGATTCGCGCCTGCCCGAAATCGTGG    811
                     |||||||.||.||        |||||        ||.||.||.|||.|.|
BPUM_0417___d    632 TTTGGGATGTGCTGTCTGACACAAGG--------CTTCCAGAGATCATTG    673

BSNT_00765___    812 A----GCGGAACAAAGCAGTTTATAATGAAGAAATCCGTGTCAGCGGAAA    857
                     |    |||||.|    |.||.||||||||||||||.|.|.|.||||||||
BPUM_0417___d    674 ATCGCGCGGAGC----CCGTCTATAATGAAGAAATTCATATGAGCGGAAA    719

BSNT_00765___    858 AGTCATCATGAGCAGCAGAATTCCGATCGTCATGAAGAAAAAAGTGATCG    907
                     ....||.|||||.|||.||||||||||.||||||||.||.|||.|.||.|
BPUM_0417___d    720 GCGGATTATGAGTAGCCGAATTCCGATTGTCATGAAAAAGAAAATTATTG    769

BSNT_00765___    908 GCGCCGTCGCGATTTTTCAGGACAGAACGGAAGCGGCCAAGATGGCAGAG    957
                     |.||.|||||.||||||||||||||.||.||||||.|.||..||||||||
BPUM_0417___d    770 GAGCGGTCGCCATTTTTCAGGACAGGACAGAAGCGACAAAATTGGCAGAG    819

BSNT_00765___    958 GAATTGACTGGTGTCAGAAACTTTGTGGAGGCGCTCCGTGTCCAAAACCA   1007
                     ||..|.||.||.||.|..||||||||.||.|..||.||.||.|||||.||
BPUM_0417___d    820 GAGCTAACCGGGGTTAAGAACTTTGTAGACGGTCTGCGGGTACAAAATCA    869

BSNT_00765___   1008 TGAGCATATGAATAAGCTGCACACGATAGCCGGTCTCATCCAGCTGGGGA   1057
                     ||||||||||||.|||||.||.|||||.||.||.||.||.|||||.||.|
BPUM_0417___d    870 TGAGCATATGAACAAGCTTCATACGATTGCTGGGCTGATTCAGCTAGGTA    919

BSNT_00765___   1058 AATCTGAAAAAGC-CTTGCAGCTTGCATTCCAGGCGTC--AACTGAGCAG   1104
                     ||.|.||..|.|| |||| |.||.||.||.||..||.|  ||  |||||.
BPUM_0417___d    920 AACCCGATCAGGCACTTG-ATCTAGCCTTTCAAACGACGGAA--GAGCAA    966

BSNT_00765___   1105 GAAAATGTGACT-GAATTTCTGCACCGCTCG----ATTCAAAATGACGCA   1149
                     |||.||||| || ||.|||||.||    |||    |||||..||||.||.
BPUM_0417___d    967 GAACATGTG-CTGGACTTTCTTCA----TCGGGTCATTCAGCATGATGCC   1011

BSNT_00765___   1150 GCGGCAGGCCTTCTAT---TAAGTAAAATCAGAAGGGG-AAGAGAGCTCG   1195
                     |..||.||   |.|||   |.||.|||||||||||||| ||| |||||.|
BPUM_0417___d   1012 GTTGCGGG---TTTATTGATGAGCAAAATCAGAAGGGGCAAG-GAGCTAG   1057

BSNT_00765___   1196 GCATTGCTGTTCATATAGATGAAAACAGCAGTCTTCAGCAATTTCCC-GA   1244
                     |.||....||..|..||||.|||.|.|||..|||.| |..||||||| ||
BPUM_0417___d   1058 GTATAAAGGTCGAAGTAGACGAACAGAGCTATCTGC-GTGATTTCCCTGA   1106

BSNT_00765___   1245 GCATATTGATCAGCATGATATTGTCG----TGCTTTTGGGGAATCTGATT   1290
                     ||.|.|.|||||.||||||| ||.||    |||||   ||.||.||||||
BPUM_0417___d   1107 GCGTCTAGATCAACATGATA-TGACGAAGCTGCTT---GGCAACCTGATT   1152

BSNT_00765___   1291 GAAAATGCCTTCGGCTCATTTGAAACCGTTCAATCTGA-AGAC---AAAC   1336
                     ||.||||||||.|.|||.|.|||.||.||..||    | ||||   |||.
BPUM_0417___d   1153 GAGAATGCCTTTGCCTCGTATGATACTGTAGAA----AGAGACACAAAAT   1198

BSNT_00765___   1337 GAATTGACATTAGTATCGAACAAACAGATGATATCCTTGCTATTTTAATA   1386
                     |.|||...||||||||.||.|||||.||.|||.||||.||.||||||||.
BPUM_0417___d   1199 GCATTTCTATTAGTATTGATCAAACCGAGGATGTCCTCGCGATTTTAATT   1248

BSNT_00765___   1387 GAAGATAACGGCTGCGGAATTGATCCGGCACAT-ATGCCTCGCCTTTACG   1435
                     |||||.||.||||.|||.|||||...|| |.|| ||.|||....|||.||
BPUM_0417___d   1249 GAAGACAATGGCTCCGGGATTGAAGAGG-AAATGATTCCTTATATTTTCG   1297

BSNT_00765___   1436 ACAAAGGTTT----TACGGTCAATAAAACTGGCGGCACAGGCTATGGCCT   1481
                     |.||||||||    .||||..||.||    |||||.||||||||||||||
BPUM_0417___d   1298 ATAAAGGTTTCACACACGGCAAAGAA----GGCGGAACAGGCTATGGCCT   1343

BSNT_00765___   1482 GTATCTAGTGAAACAAATCATAGACAAA-GGATCGGGCGCGA----TAGA   1526
                     ||||.|.||.|||...||.||.|||||| ||||     |.||    ||||
BPUM_0417___d   1344 GTATATTGTAAAAACGATTATCGACAAAGGGAT-----GGGAAATGTAGA   1388

BSNT_00765___   1527 AGTTGATTCACATGCGGAGCAGGGGACAT--------CTTTTTCTATCGT   1568
                     ||     ||||||  ..||||..|| |||        |.||.||.||||.
BPUM_0417___d   1389 AG-----TCACAT--CAAGCATCGG-CATTGGTACCACCTTCTCAATCGA   1430

BSNT_00765___   1569 TTTTCCAATGA----AG-GGGGAGGAAGCACAGCATGGCTCGTAA   1608
                     .||.|||||||    || ||.|||  || |||| |||.       
BPUM_0417___d   1431 ATTCCCAATGATTATAGAGGAGAG--AG-ACAG-ATGA-------   1464


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.