Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00764 and BPUM_0416
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:32
# Commandline: needle
# -asequence dna-align/BSNT_00764___dctB.1.24716.seq
# -bsequence dna-align/BPUM_0416___dctB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00764___dctB-BPUM_0416___dctB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00764___dctB-BPUM_0416___dctB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00764___dctB
# 2: BPUM_0416___dctB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity: 750/1176 (63.8%)
# Similarity: 750/1176 (63.8%)
# Gaps: 201/1176 (17.1%)
# Score: 2360.5
#
#
#=======================================
BSNT_00764___ 1 ATGAAGAGTTTGCTTGCAT-----GTCTCGCACTGATGATCGCTGGAATT 45
|||||||.|||.||.||.| .|.|.||.|| |||| |||..||
BPUM_0416___d 1 ATGAAGAATTTACTCGCCTATACACTATTGCTCT--TGAT---TGGTTTT 45
BSNT_00764___ 46 GCAACCGCTTTATTTATTGGATTCCATGATCATA-CAGGCAATAAAAAGA 94
|.|||||||||||...||||.|| |.|||||| .|.|| .||||||
BPUM_0416___d 46 GTAACCGCTTTATACTTTGGTTT---TTATCATATGATGC---CAAAAGA 89
BSNT_00764___ 95 ----------TTGTTTATGATGACGAACAGGAAGGCCTGCAGGATCAAAT 134
|| |||.||.||||||..|||.|||..||||||..|
BPUM_0416___d 90 CGCGACGACCTT-----TGACGATGAACAGACAGGGCTGAGGGATCAGCT 134
BSNT_00764___ 135 CGTGTTTAAATTCAGCCACGTGGTTGCTGAAAATACGCCAAAAGGGCTGG 184
.|||||.|||||.|||||.||.||.||.||.|||||.||||||||.||.|
BPUM_0416___d 135 TGTGTTCAAATTTAGCCATGTCGTGGCAGATAATACACCAAAAGGACTTG 184
BSNT_00764___ 185 CCGCCAATAAATTCGCTGATTTGGTGAACGAAAAATCAGGCGGGAAAATA 234
||||.||.|||||.|||||..|.|||.||||||||||.|..||.||.||.
BPUM_0416___d 185 CCGCAAAGAAATTTGCTGAGCTTGTGCACGAAAAATCCGATGGCAAGATC 234
BSNT_00764___ 235 AAAATAGAAGTATTTC-CGAATGGAAGCCTGTACTCGGACATTGAAGAAA 283
|..||..||.| |||| |.||.|||||.||.||.||.||.||.|||||||
BPUM_0416___d 235 ACCATTCAAAT-TTTCTCCAACGGAAGTCTTTATTCTGATATAGAAGAAA 283
BSNT_00764___ 284 TTGAAGCATTGCAAAACGGCG----ATGTTCAATTTATCGCCCCCTCCAC 329
||.|.|||.| |||| |.| |.||||||||||||||.||.||.||
BPUM_0416___d 284 TTAATGCACT-CAAA---GAGAATCAAGTTCAATTTATCGCACCATCTAC 329
BSNT_00764___ 330 ATCGAAGCTCGGCATGCTCTCGCCTGAATGGGGAGTGCTGGATCTGCCGT 379
.|||||||||||||||||.||.|||||.|||...|..||.||.||.||.|
BPUM_0416___d 330 CTCGAAGCTCGGCATGCTATCCCCTGAGTGGCTGGCACTTGACCTTCCCT 379
BSNT_00764___ 380 ATGCATTTACAGATTACAACGCCGTCAAAAAAGGGCTGAACGGAAGCA-- 427
.|||.|||.|..|||||.|.||.||..||.||||..||.|.|| .|||
BPUM_0416___d 380 TTGCTTTTTCTAATTACGATGCGGTTCAAGAAGGCTTGCATGG-TGCAAT 428
BSNT_00764___ 428 --------------TCGGCACACAGCTGTTTGATTCTCTAAAGAAAAACC 463
|||||||.|.|| |||||
BPUM_0416___d 429 TGGACAAAGATTGTTCGGCACCCTGC-----------------AAAAA-- 459
BSNT_00764___ 464 AAT----TAAAAGGACTGGCCTATTGGACGAACGGCTTTAAGCAAATCAC 509
.|| ||||.|||.||||.||||||||.||.|||||||||||||||||
BPUM_0416___d 460 GATGGGCTAAAGGGAATGGCGTATTGGACAAATGGCTTTAAGCAAATCAC 509
BSNT_00764___ 510 AACAAATCAAGGGCCGGTCAAAACA-CCGGATGATTTAAAAGGGCAGGAT 558
..|.|||.|||||||..|| ||||| ||...||||||||||...||...|
BPUM_0416___d 510 CTCTAATAAAGGGCCAATC-AAACAGCCTAGTGATTTAAAAAACCAATCT 558
BSNT_00764___ 559 CTGCGCATTATGCAAAGCGATGTGATTGAGGATCAGTTCAAGCTGCTTGG 608
||.|||||||||||||||||..|||||||..|.||.|||||.||.|||||
BPUM_0416___d 559 CTCCGCATTATGCAAAGCGACATGATTGAAAAGCAATTCAAACTTCTTGG 608
BSNT_00764___ 609 CGCAACACCTCATCAGGAATCCTTCAATTCTACCTTTCAGCTGTTAGA-- 656
|||||..||..||||||||||.||.|||||.||.||||||||.|||||
BPUM_0416___d 609 CGCAAAGCCCTATCAGGAATCGTTTAATTCGACGTTTCAGCTATTAGAAA 658
BSNT_00764___ 657 -AAACAATGTAGTCGATGGCGAAGAAAATACAATTTCAAACATCTATTCT 705
|||.||.||| |||||.|||||||||||.||||||||.||.|||||.
BPUM_0416___d 659 CAAAAAAGGTA---GATGGTGAAGAAAATACCATTTCAAATATTTATTCA 705
BSNT_00764___ 706 AAAAAATTTTATAATGTTCAGGACTATTTGACAATAAGCAGCCACGGTTA 755
||||||||.|||.||.|.||.||||||.||||.||.||.|..|||||.||
BPUM_0416___d 706 AAAAAATTCTATCATATACAAGACTATATGACGATCAGTAATCACGGATA 755
BSNT_00764___ 756 CCTCGGCTACGCTGTCATGACTGATGAACACTTC-TGGAAGGCGCAAACA 804
..|.|||||.|..|||.|.||.|||.||..|||| |.||..|| ||.|||
BPUM_0416___d 756 TTTGGGCTATGTGGTCTTAACAGATCAATCCTTCTTTGATCGC-CAGACA 804
BSNT_00764___ 805 CCAGAAACAAGACGCATTTTGAC-TGAAGCGATGAAGGAGACGACGGAGT 853
||.|||||.|.||..||||| || ||||||||||.|.||.||.||.|..|
BPUM_0416___d 805 CCTGAAACGAAACAAATTTT-ACTTGAAGCGATGGAAGAAACAACCGCTT 853
BSNT_00764___ 854 GGAATGAAACGTATGCCGAACAAATGAACAAGGAGCAGCTGGAAGAAATC 903
|||||||||...||||.|||||.||||||||.||.||.|||||.||.||.
BPUM_0416___d 854 GGAATGAAAAACATGCAGAACAGATGAACAAAGATCAACTGGAGGAGATT 903
BSNT_00764___ 904 AAAAAGAATTC------TGCTATACAT--ATT--TATGAGCTGTCAGATA 943
|||..|.|.|| |||.||.||| ||| .|..||||| |
BPUM_0416___d 904 AAACGGGAATCACCGATTGCCATTCATGAATTGACACCAGCTG------A 947
BSNT_00764___ 944 AAGAGAAACAAGAATGGATG-AAGCGTCTTGACCCTGTTTACCGGCAGTA 992
||| ||||.|||||.|| |||| .||.||.|||.| |||
BPUM_0416___d 948 AAG----ACAAAAATGGGTGAAAGC-CCTCGATCCTTT---------GTA 983
BSNT_00764___ 993 TG----AGCCCA-------------TCTTCGGGCGGGAGCTGATCCGGAA 1025
|| ||||.| |||.| .||.||| ||
BPUM_0416___d 984 TGAAGAAGCCGAAAAAACCATTGGTTCTCC--------CCTAATC---AA 1022
BSNT_00764___ 1026 ACTGTT---GGAGCTGC-----------GAAAA------GATTCAT---- 1051
||.|.| .||||||| |||.| |||.|||
BPUM_0416___d 1023 ACAGATTCGTGAGCTGCGTGCGCGTTATGAACATTCTCCGATCCATGCTT 1072
BSNT_00764___ 1052 ----AG-------------------- 1053
||
BPUM_0416___d 1073 TTCAAGAAGAGGATAAGACCAAATAA 1098
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