Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00753 and BPUM_0414

See Amino acid alignment / Visit BSNT_00753 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:31
# Commandline: needle
#    -asequence dna-align/BSNT_00753___ydaS.1.24716.seq
#    -bsequence dna-align/BPUM_0414___ydaS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00753___ydaS-BPUM_0414___ydaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00753___ydaS-BPUM_0414___ydaS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00753___ydaS
# 2: BPUM_0414___ydaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 276
# Identity:     180/276 (65.2%)
# Similarity:   180/276 (65.2%)
# Gaps:          33/276 (12.0%)
# Score: 539.5
# 
#
#=======================================

BSNT_00753___      1 ATGCTTA-GCTTTTTGGTTTCATTAGTTGTTGCTATTGTTATCGGATTAA     49
                     ||| ||| |.|||.|..|||||||||||||.||.|||||.|||||..|.|
BPUM_0414___y      1 ATG-TTAGGATTTCTAATTTCATTAGTTGTGGCGATTGTCATCGGCCTTA     49

BSNT_00753___     50 TTGGGAGCGC---CATTGTAGGAAACCGGCTGCCGGGAGGAATTTTCGGC     96
                     |.||.||.||   |..||.|||.|   |..|.||.||||||....||||.
BPUM_0414___y     50 TCGGCAGTGCACTCGCTGGAGGTA---GTGTACCAGGAGGATGGATCGGT     96

BSNT_00753___     97 TCTATGATTGCCGGGCTGATCGGCGCTTGGATCGGGCACGGACTTCTTGG    146
                     ||.||||||||.||.||....||.||||||||.||.||||||.|.|||||
BPUM_0414___y     97 TCAATGATTGCAGGACTTGCAGGTGCTTGGATTGGTCACGGATTGCTTGG    146

BSNT_00753___    147 CACATGGGGACCGAGCCTCGCCGGCTTTGCTATTTTCCCGGCCATCATCG    196
                     .||.|||||.||.||..|.||.||||||||.||..|.||.||||||.|.|
BPUM_0414___y    147 AACGTGGGGTCCTAGTTTGGCAGGCTTTGCGATCATTCCAGCCATCTTAG    196

BSNT_00753___    197 GGGCAGCCATCTTCGT-AT--TCTTGCTGGGCCTTATATTCCGCGGGCTG    243
                     |.|||||.|||||.|| ||  |||   |..||||.||.|||||..|  ||
BPUM_0414___y    197 GCGCAGCGATCTTTGTCATTATCT---TAAGCCTGATCTTCCGTAG--TG    241

BSNT_00753___    244 CGG----AAGG-------AAGCCTAG    258
                     .||    ||||       ||      
BPUM_0414___y    242 TGGGATCAAGGGTTTCATAA------    261


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