Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00736 and BPUM_0412
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00736___ydaF.1.24716.seq
# -bsequence dna-align/BPUM_0412___ydaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00736___ydaF-BPUM_0412___ydaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00736___ydaF-BPUM_0412___ydaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00736___ydaF
# 2: BPUM_0412___ydaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 349/659 (53.0%)
# Similarity: 349/659 (53.0%)
# Gaps: 196/659 (29.7%)
# Score: 730.5
#
#
#=======================================
BSNT_00736___ 1 ATGTTCACTTG-----CAAGGTAAATGAGCACATCACCATCCGATTATTG 45
|||| ||| ||.|.|.|| ||| ||..||||.||.||..|.
BPUM_0412___y 1 ATGT----TTGTTTATCAGGATCAA-GAG---ATATCCATGCGGTTGCTT 42
BSNT_00736___ 46 GAGCCGAATGATGCGGAGCGGCTGGCCGAACTCATTA-----TCCAAAAT 90
|||||.|..||.|| ..|||.||..|| || ||
BPUM_0412___y 43 GAGCCAAGAGACGC-----------AAGAAGTCTGTATTTGCTC----AT 77
BSNT_00736___ 91 CAGCAGCGGCTC-----AGC--------CAGTGGCTGTTTTGGGCGGAAA 127
| |||||| || ||| .|.|||.||.||||||.||
BPUM_0412___y 78 C--CAGCGG-TCGAGAGAGCATTTACGTGAATGGATGCTTTGGGTGG--- 121
BSNT_00736___ 128 ATCCAAGCAGCGCTGACACGTACAG--AGAAACCATCAT-----TCCAGA 170
||.||| ||.|.|| |.|| |||.|..||.|| ||| |
BPUM_0412___y 122 ATTCAA------CTCAGAC--AGAGGAAGACAGTATGATGTTTATCC--A 161
BSNT_00736___ 171 ATG-GCG--GCATCA---GTATGCAGACCTGAACGGCATTGAGGCGGGGC 214
|.| ||| |||.|| | |||||||.| |||||..||.|.|||||..
BPUM_0412___y 162 AGGTGCGATGCAGCAAGCG-ATGCAGAAC--AACGGGTTTCAAGCGGGCA 208
BSNT_00736___ 215 TCCTTTATGACGGCAGCCTATG----------CGGCATGAT---CAGCC- 250
|| |..|.|| ||| ||||||.|| ||.||
BPUM_0412___y 209 TC--TGGTCAC--------ATGGAGAACTTGTCGGCATCATTGGCACCCA 248
BSNT_00736___ 251 -----TGCATAACCTTGATCAAGTGAATCGAAAGGCTGAAATCGGATATT 295
|.||| |.|||| |||..||..|.|..||||||.||||
BPUM_0412___y 249 TCAAATTCAT----TGGATC-----AATAAAACCGTTTCAATCGGCTATT 289
BSNT_00736___ 296 GGATTGCTAAAGACTTTGAAGGGAAAGGCATTATTACAGCTGCCTGCCGA 345
||.|.|...|||.||.|.||||.|||||.||.||.|||...||.||||
BPUM_0412___y 290 GGCTCGGAGAAGGCTATCAAGGAAAAGGGATCATGACAAAAGCATGCC-- 337
BSNT_00736___ 346 AAAC--TCATTACG-TATGCTTTTGAAGAGCTTGAG--CTGAATCGTGTG 390
||.| ||||| || |||...||||||||| ||.| |||.|.|||.|.
BPUM_0412___y 338 AAGCGGTCATT-CGCTATTTATTTGAAGAG--TGCGGACTGCACCGTATT 384
BSNT_00736___ 391 GCGATCTGTGCGGCTGTCGGAAACGAAAAAAGCAGAGCG-GTTCCGGAGC 439
|.|||..|.||.|||||||..|||.|.||||||||| || .|.||.||||
BPUM_0412___y 385 GAGATTAGGGCTGCTGTCGATAACCAGAAAAGCAGA-CGTATCCCAGAGC 433
BSNT_00736___ 440 GG--ATCGGGTT-TCTAGAGGAAG--------------GAAGGGCACGGG 472
|| |||...|| |||.||||.|| |||.||| .|||
BPUM_0412___y 434 GGTTATCCTTTTCTCTTGAGGGAGTGTTGAGACAATGTGAATGGC-TGGG 482
BSNT_00736___ 473 --ATGGCTTATAC-GTAAACGGCAGGCATCACGACCTCGTCTACTACAGT 519
||.|||| ||| | |||| |.||.| .|||...
BPUM_0412___y 483 TAATCGCTT-TACTG------------ATCA-----TTGTGT-GTACGCC 513
BSNT_00736___ 520 CTGTTAAAGCGTGAAT----------------GGGAAGGCGAAAAATAA- 552
||.|||.|||.||||| || |.||||..|||.|
BPUM_0412___y 514 CTTTTACAGCCTGAATATATGAAACAAAAAACGG--ATGCGATGAATCAG 561
BSNT_00736___ 552 --------- 552
BPUM_0412___y 562 CACACTTAA 570
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