Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00750 and BPUM_0411

See Amino acid alignment / Visit BSNT_00750 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:31
# Commandline: needle
#    -asequence dna-align/BSNT_00750___ydaQ.1.24716.seq
#    -bsequence dna-align/BPUM_0411.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00750___ydaQ-BPUM_0411.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00750___ydaQ-BPUM_0411.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00750___ydaQ
# 2: BPUM_0411
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     165/309 (53.4%)
# Similarity:   165/309 (53.4%)
# Gaps:          84/309 (27.2%)
# Score: 383.0
# 
#
#=======================================

BSNT_00750___      1 ATGATGTCAGTATTTATTCTGTTTTATTTGTGGATTGTTCCTATCGTTAT     50
                        |||||..|..|||||.|.|||||.||.||||||||.|||.|.||..|
BPUM_0411          1 ---ATGTCTCTTATTATTTTATTTTACTTATGGATTGTCCCTTTAGTATT     47

BSNT_00750___     51 CGGCATTTTATGTTCTGTTGCTGCCCATAGATCCAAGGGAAAAATGAGAG    100
                     .||.|||||           ||.|.|||   |||    .||.||.||.||
BPUM_0411         48 TGGTATTTT-----------CTTCTCAT---TCC----TAACAAAGAAAG     79

BSNT_00750___    101 TC--------GCGCCCGGCATTG------------CCATGATCGTGCTCA    130
                     .|        .||||  ||.|||            .||||||.|.|||||
BPUM_0411         80 CCACCTACAAACGCC--GCTTTGTCCCATCCTATAGCATGATAGGGCTCA    127

BSNT_00750___    131 GTATTATTTCCCTAAT-------CACGGCGTTTACGGCCGGACACACAAA    173
                     |.||..|||..||.||       |.||.| |||.|.|||.|.|      |
BPUM_0411        128 GCATCGTTTTTCTCATTCTGGCACTCGTC-TTTTCAGCCAGCC------A    170

BSNT_00750___    174 TTTCCACGTGTTTATCGGCGGCATGTTTTTATTCGGCA----CCTTCTTG    219
                     |||.|   |.|||||..|.||.|||||..||||.|.||    ||||.|||
BPUM_0411        171 TTTTC---TATTTATTTGTGGTATGTTCCTATTTGCCACCACCCTTGTTG    217

BSNT_00750___    220 G-TCGGTTCTGCTTTTCCT--TTCTT---CTTCGGGCTGAAGAAAAAAGA    263
                     | .|.|    ||.|..|||  |||||   |||.||        |||||.|
BPUM_0411        218 GCACAG----GCATCCCCTTATTCTTAGCCTTTGG--------AAAAACA    255

BSNT_00750___    264 GAA--ATAA    270
                     ..|  .|||
BPUM_0411        256 CCATCCTAA    264


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