Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05020 and BPUM_0408
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_05020___yqcG.1.24716.seq
# -bsequence dna-align/BPUM_0408___yqcG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05020___yqcG-BPUM_0408___yqcG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05020___yqcG-BPUM_0408___yqcG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05020___yqcG
# 2: BPUM_0408___yqcG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1797
# Identity: 990/1797 (55.1%)
# Similarity: 990/1797 (55.1%)
# Gaps: 456/1797 (25.4%)
# Score: 2289.0
#
#
#=======================================
BSNT_05020___ 1 ATGAAAGTATTTGAAGCCAAAACACTGCTTTCCGAAGCTGAAAACCGTGC 50
|||.|.|.| |.|.|||||||||.| .|| |||..|||.|.
BPUM_0408___y 1 ATGGACGCA----AGGTCAAAACACTAC------CAG--GAACTCCGCGA 38
BSNT_05020___ 51 AAAAGAATACAAAGATTTAAAAAGTAAAATGATCAAATTAAAGAAAGCAT 100
| .|||||.||.|.|||||.|||||||
BPUM_0408___y 39 A------------------------CAAATGGTCGATTTAAAAAAAGCAT 64
BSNT_05020___ 101 TCAAAGCTGTCGCTGATTTAGATGATAGTGAATTTTCAGGTAAAGGTGCA 150
|..|||.|||.||..|..|.|.||| |||.||..|.||.||||||||.
BPUM_0408___y 65 TACAAGGTGTTGCCAACCTCGGTGA---TGACTTCACTGGGAAAGGTGCC 111
BSNT_05020___ 151 AATAACATCAAATCATTTTATGAAGATCAGGCCGGCATTGCTGACCAGTG 200
.|||||||.|||...||.|||.||||.|.|||.||.|.||..|||..|
BPUM_0408___y 112 GATAACATTAAAAGTTTCTATAAAGAGCTGGCTGGAAATGTAGACATG-- 159
BSNT_05020___ 201 GATTGATC----TAATTGAGATGAAAATATCTTTT--TTAACGAGTATTC 244
||.||| |.||.||.|.|.|||.|.|.||| |.|| .||.||.
BPUM_0408___y 160 --TTTATCAGCTTCATCGATAAGCAAAAAGCCTTTCATGAA--GGTGTTT 205
BSNT_05020___ 245 CTGGTATCTTGGAAGACTCCAGCTTAT-CA------------GATGCCTA 281
|||| |||.|.||.|.|| || |||.|||.
BPUM_0408___y 206 CTGG----------GACACTAGATGATACAAACTTTGGCGGCGATACCTT 245
BSNT_05020___ 282 CATAGAAGAATCCTTCCTAGA----GC-------ATGAGTTGGC--CAAT 318
..||||||||..|||..|||| || ||| ||| |||
BPUM_0408___y 246 TGTAGAAGAACACTTTTTAGACAACGCTGTACATATG----GGCATCAA- 290
BSNT_05020___ 319 GCTAATTCTAAAT--CAAAATCCATCATGTCA--GAACAGAAAAAGGCCA 364
|||| ||||| .||| |||.| ||.||.||||||||..
BPUM_0408___y 291 ---------AAATGCCAAAA-GCAT--TGTAAAGGATCAAAAAAAGGCGC 328
BSNT_05020___ 365 TCAAAGACATCTTAAATGAAATACACGATGTCCTTCCCTTAGATGTTTTT 414
|.|||..|||.||..|.||.||..||||..|||||.|..||||.||.|||
BPUM_0408___y 329 TTAAAACCATTTTTCAAGACATCGACGACCTCCTTTCACTAGAAGTATTT 378
BSNT_05020___ 415 TCAACGGAAGATTTTAAAACTGAGTTATCTTCTGCTGAGAAAA------- 457
|||..|.|||| ||| ||.|||.||||
BPUM_0408___y 379 ---------GATAGTCAAAC--------CTT-TGATGAAAAAATTGCAGA 410
BSNT_05020___ 458 -----------AACGAAAAAATACAGTCGAGAAAA----TAAGTGAAGTC 492
|.||||||||.||||| |||| ||||.||..|.
BPUM_0408___y 411 TGCGGAAGACGAGCGAAAAAAGACAGT----AAAAGATCTAAGAGAGCTT 456
BSNT_05020___ 493 GATGAGGACCTAACGTCA----GAATACGCCTTGTCAGAAGCAAATGAAC 538
|||.|..|..||| | |||||.||.|||||||||.|..|..|.|
BPUM_0408___y 457 GATCAAAATTTAA----AAGATGAATATGCTTTGTCAGAAACGGAGCAGC 502
BSNT_05020___ 539 AAATGATTCA--GGCTGAT--TACCAAGCACTCATAAATGCAACA----- 579
|| |.|.|| ||| || |||..||.|.|.||.|||||.|||
BPUM_0408___y 503 AA--GCTACAATGGC--ATTGTACGCAGAAATGATGAATGCCACAAATGA 548
BSNT_05020___ 580 -GCAAAAGGCAAGAGTGCCTCTCCTATCCACTATAACGCAAAGGCTTATA 628
|.||||| .||.| |||||.||..|.|.|.||...||.||.|||.
BPUM_0408___y 549 TGGAAAAG---CGATT---TCTCCAATGAATTTTGACAAGAAAGCGTATC 592
BSNT_05020___ 629 GAGACAGTGAAATTCACAAGATGACTGAG--------GATGTAAAAAAAC 670
.|.|.||.|||||..|||| || |||.|..||||.|
BPUM_0408___y 593 AAAATAGCGAAATCTACAA--------AGCAAAAAGCGATATTGAAAAGC 634
BSNT_05020___ 671 AATCGACTGATTATATCGCCTTT---AAAGATCAGCAGG----CCGAACA 713
||.|..|.||.|||.||..|.|| |||||.||.|||| |||
BPUM_0408___y 635 AAACTTCCGAATATCTCAACATTAAAAAAGAACAACAGGAAGCCCG---- 680
BSNT_05020___ 714 AAGAAGGCTAGCAAAAGAACAGGAAGAGCTAGCGAACAGGCCATGGTACG 763
||| |.|.|||||||||||.||||..||.||.||..|.||.|||||.|
BPUM_0408___y 681 -AGA--GATTGCAAAAGAACAAGAAGCACTCGCAAATCGTCCTTGGTATG 727
BSNT_05020___ 764 AAAA-------------GACGTGGGATGTTGTTTGTAATTTTACAGGAGA 800
|||| |.|| ||.||.|.||...|.|..|.|||||.|
BPUM_0408___y 728 AAAAAGCCCTCGATTATGGCG-GGAATATCGTGAATGAACTGACAGGCG- 775
BSNT_05020___ 801 AGTCTCTGGATATTATGATTATAAAAGAGCCGCTGATGGAGTTGATCCTG 850
|| .|.|||...|||.|.|||||....||.|||||.||..
BPUM_0408___y 776 ------TG-----AACGATGCAAAACGCGCCGCAACAGGCGTTGACCCGA 814
BSNT_05020___ 851 TTACCGGCGAA-AAGTTGACAGAGGGCCAACGTGTAGCAGCTGGAGCGAT 899
|.||.|||||| ||.|| ||.|..||.||.||.||.||.||.||.|..||
BPUM_0408___y 815 TCACAGGCGAAGAACTT-ACCGCAGGACAGCGCGTCGCCGCAGGCGGCAT 863
BSNT_05020___ 900 GGCTGCGGCAGGTTATGTCCCGATTGTTGGATGGGCTGGAAAATTAGCA- 948
|||.||.|||||.|||.||||.||.||.||.|||||.|| ..|||
BPUM_0408___y 864 GGCAGCCGCAGGATATATCCCAATCGTCGGCTGGGCAGG-----GCGCAT 908
BSNT_05020___ 949 ----AAAGGCGGAAAAGCTGTTTATTCAACCAGTAAAG-CACTCTACA-C 992
|||||.||||||||.||.|||..|||.|...||| ||| || || |
BPUM_0408___y 909 TTTCAAAGGGGGAAAAGCCGTCTATAAAACGACCCAAGCCAC-CT-CAGC 956
BSNT_05020___ 993 AGCAGACAAAGCACTTGATGTCTACAAAACGCCACAGACATTCC----AT 1038
.||||.|||||||.|.||..|.|||||.||..|.|| |.|.||| |.
BPUM_0408___y 957 CGCAGTCAAAGCAGTCGACATTTACAAGACATCGCA-AAAATCCTTTGAC 1005
BSNT_05020___ 1039 GCTCTTCAAAA-TTCGAGTAAAGGTCTT-TATGGGCTTGCTTCTGCGAAC 1086
|| |||.|||| .|||...||||| ||| |||||.||..||.||.|.|||
BPUM_0408___y 1006 GC-CTTAAAAACATCGCAAAAAGG-CTTATATGGACTCACTGCTACAAAC 1053
BSNT_05020___ 1087 GGTTTTAGCGAAGCTATAACAGGCCGCGACATGTTTGGCAATAAGATTTC 1136
||.||.||||||||.||.|||||..|.|||||||||||.||||||||.||
BPUM_0408___y 1054 GGCTTCAGCGAAGCAATTACAGGTAGAGACATGTTTGGGAATAAGATCTC 1103
BSNT_05020___ 1137 AAAAGAACAGCAGCATAAC-AGTATAAATGCAGCACTTG--CTGTTTTCA 1183
.||||||||.|||.| |.| |||||.|||||.||.||.| .||.|||
BPUM_0408___y 1104 GAAAGAACAACAGGA-AGCGAGTATGAATGCGGCGCTGGGAATGCTTT-- 1150
BSNT_05020___ 1184 TGCCATTTGGTGCAAAAGGTTTTTCCGGAAAAACGGGCCTTAAAGCTTCA 1233
|.||.|||||.||.|||||.|||...||.||.|.|||..||||
BPUM_0408___y 1151 TACCGTTTGGGGCGAAAGGGTTTCATGGGAAGATGGGTGTTAA------- 1193
BSNT_05020___ 1234 TCATCAACTGAA-ACC---GTAACTCAAG-TTACAGTTAGTAGAAAA--- 1275
||| ||| | ||||.||| .|.||||| .|||||||
BPUM_0408___y 1194 ---------GAATACCAGAG-AACTTAAGCATCCAGTT-TTAGAAAATCC 1232
BSNT_05020___ 1276 ----------GGGGCTTTTAAAGA-------------AGC-GAAAAGAGA 1301
.|.|||||.||||| ||| ..||.||
BPUM_0408___y 1233 ACGAGCAGGTAGTGCTTTGAAAGATGATTTTTATCATAGCTTTAATGA-- 1280
BSNT_05020___ 1302 TGCCGGTATACCACGTGCTCAACAAC----CAGAATCAATC-AATCG--- 1343
|||| .|..||||| ||| .|||.|| ||..|
BPUM_0408___y 1281 ------TATA-------ATTGACAACTATGCAG-TTCATTCTAAGAGATT 1316
BSNT_05020___ 1344 TG----------TAGAAATG--CGTACTGCTCC------TCA---CGAAG 1372
|| ||||||.| |.||..|.|.| ||| .||.|
BPUM_0408___y 1317 TGATTTACCAAATAGAAAAGGCCATATGGATTCGTTGTATCAAATAGAGG 1366
BSNT_05020___ 1373 GCGGTC-GTG--TAATTA--AAGATAAAAATGGTAAAA-TCATTAGGACG 1416
|| || ||| |||.|| ||...|||.|| |||||| |.| ||.||
BPUM_0408___y 1367 GC--TCAGTGGTTAAGTACGAAACGAAATAT-GTAAAAGTAA--AGAAC- 1410
BSNT_05020___ 1417 AGAGAATACACCTTCACT--AACAACAAAGGCGAAAAAATTATTATACAA 1464
|||.|.|||..|.| .|| ||.|||||.||.|| ||
BPUM_0408___y 1411 ----AATGCCCCTGAAATGGTAC-----AGTCGAAAGAAATA------AA 1445
BSNT_05020___ 1465 GATCATAGCGCTG---GACATGAAAAAGGTGGTCAAGGTCCGCACTTTAA 1511
|| ||.||| || || ||| |||||| ||.||| .|| ||
BPUM_0408___y 1446 GA--ATGGCG-TGTTTGA-ATG-----GGTGGT--AGATCC-AAC---AA 1480
BSNT_05020___ 1512 CG------TTAGACCAATTGA----TAATA-CTCGAACAGGAAAAGTCCC 1550
|| .|| |||.||.|| |.||| ||.| .||.||||
BPUM_0408___y 1481 CGAATACAGTA-ACCCATAGAACTTTTATACCTGG---TGGCAAAG---- 1522
BSNT_05020___ 1551 TGGCACAAAAGAACATTATCCTTTTAATAAATAA------------- 1584
||.||..||| |||||||.|
BPUM_0408___y 1523 TGACAGGAAA---------------AATAAATCAATGGGAGAGATAG 1554
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