Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00744 and BPUM_0407
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:31
# Commandline: needle
# -asequence dna-align/BSNT_00744___ydaP.1.24716.seq
# -bsequence dna-align/BPUM_0407___ydaP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00744___ydaP-BPUM_0407___ydaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00744___ydaP-BPUM_0407___ydaP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00744___ydaP
# 2: BPUM_0407___ydaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1785
# Identity: 1202/1785 (67.3%)
# Similarity: 1202/1785 (67.3%)
# Gaps: 123/1785 ( 6.9%)
# Score: 3757.0
#
#
#=======================================
BSNT_00744___ 1 ATGGCACACAAAACTGCAGGACAAGCAATGACAGAGCTGCTTGAGCAATG 50
|||.|.||.|.|||.||||||.|||.|.|.||||.|||.||.||..|.||
BPUM_0407___y 1 ATGCCGCAAAGAACCGCAGGAAAAGAAGTAACAGCGCTACTGGAAGAGTG 50
BSNT_00744___ 51 GGGAGTTGATCATGTATACGGCATCCCCGGAGACAGTATAAATGAGTTTA 100
|||.||..|.|||.|.||.||.||.|||||.|||||.|||||.||.||.|
BPUM_0407___y 51 GGGCGTGAAACATATTTATGGAATGCCCGGTGACAGCATAAACGAATTGA 100
BSNT_00744___ 101 TCGAAGAATTAAGACACGAAAGAAATCAACTGAAGTTCATTCAAACCCGC 150
|.||||||.|.||.||.|||..||..|||.|..|.||.||.|||||..|.
BPUM_0407___y 101 TTGAAGAACTTAGGCATGAATCAAGCCAAATACAATTTATCCAAACGAGA 150
BSNT_00744___ 151 CACGAAGAGGTAGCGGCACTGGCAGCCGCGGCTGAAGCAAAACTCACCGG 200
||.|||||.||.||.|||||..||||.||.|||||.||.|||||.||.||
BPUM_0407___y 151 CATGAAGAAGTGGCAGCACTATCAGCGGCAGCTGATGCCAAACTAACAGG 200
BSNT_00744___ 201 CAAGATCGGAGTCTGTCTGTCAATCGCAGGGCCGGGAGCGGTGCACTTAT 250
.||..||||.||||||.|.||.|||||.|||||.||.||.||.|||||||
BPUM_0407___y 201 TAAACTCGGTGTCTGTTTATCTATCGCTGGGCCAGGTGCTGTCCACTTAT 250
BSNT_00744___ 251 TAAATGGTTTATATGATGCTAAAGCCGACGGCGCCCCTGTGCTGGCGATT 300
|||||||..|.||||||||.|||||.||.||.||.||.||..|.||.|||
BPUM_0407___y 251 TAAATGGACTGTATGATGCCAAAGCAGATGGTGCACCAGTTTTAGCAATT 300
BSNT_00744___ 301 GCAGGACAGGTTTCTTCTGGCGAAGTCGGACGGGACTATTTCCAGGAGAT 350
|||||.||||||.||||.|.||||||.||..|.|||...|||||.||.||
BPUM_0407___y 301 GCAGGGCAGGTTGCTTCGGCCGAAGTAGGCAGAGACGCATTCCAAGAAAT 350
BSNT_00744___ 351 TAAGCTGGAGCAAATGTTTGAGGACGTGGCCGTGTTCAA-CAGAGAGGTA 399
.||..||||||..||||||||.||.||.||.||.||.|| ||| .|||||
BPUM_0407___y 351 CAAATTGGAGCGGATGTTTGACGATGTCGCTGTCTTTAATCAG-CAGGTA 399
BSNT_00744___ 400 CATAGCGCGGAATCACTTCCGGATCTCTTAAATCAGGCGATCAGGACCGC 449
||.|..||.||..|.||.||.||..|.||.|||||.||.||||...|.||
BPUM_0407___y 400 CAGACGGCAGAGGCGCTGCCTGACTTATTGAATCAAGCCATCAAAGCAGC 449
BSNT_00744___ 450 CTACAGCAAAAAAGGCGTTGCGGTATTGAGCGTGTCAGATGATTTGTTTG 499
.||.|.|.|.|||||.||.||.||..|.|.|||.||||||||.||.|||.
BPUM_0407___y 450 TTATACCCATAAAGGTGTAGCAGTTCTTACCGTATCAGATGACTTATTTT 499
BSNT_00744___ 500 CGGAGAAAATCAAACGGGAGCCCGTGTATACTTCACCGGTGTATAT-TGA 548
|..|.|||||.||.||..|.|||||.|||||.||.|| |.|.||| ||.
BPUM_0407___y 500 CTCAAAAAATAAAGCGCAAACCCGTCTATACATCTCC--TCTTTATGTGG 547
BSNT_00744___ 549 AGGGAACCTTGA------ACCGAAAAAAGAACAGCT--------CG--TC 582
||||| || ||||||.|||||.||.|| || ||
BPUM_0407___y 548 AGGGA-----GAAGTACGACCGAAGAAAGATCAACTGCTAAAGGCGGCTC 592
BSNT_00744___ 583 ACCTGCGCCCAATATATTAATAACGCTAAGAAACCGATTATCCTGGCAGG 632
|.||| |||||.||.||.|||||.||..|.|||.|.|||||
BPUM_0407___y 593 AGCTG----------ATTAACAATGCGAAGAAGCCAGTCATCTTAGCAGG 632
BSNT_00744___ 633 GCAGGGA-------ATGAAAAAGGCGAAACGGGAGC-TCTTAGAATTTGC 674
..|.||| |||.||||| || |||| |||| ..||||||
BPUM_0407___y 633 TAAAGGATTAAGACATGCAAAAG----AA---GAGCTTCTT-TCATTTGC 674
BSNT_00744___ 675 GGACAAAGCCGCCGCTCCGATCGTTGTTACACTCCCGGCAAAAGGTGTCG 724
.||.||.||.||.|||||.|||||..|.||||||||.||||||||.||.|
BPUM_0407___y 675 AGAAAAGGCAGCTGCTCCTATCGTCATCACACTCCCTGCAAAAGGGGTTG 724
BSNT_00744___ 725 TTCCCGATAAGCACCCGCATTTTCTCGGCAACCTCGGGCAGATCGGAACA 774
|.||.||||.|||.||..|.|||.|.||.|||.|.||.||.||.|||||.
BPUM_0407___y 725 TACCAGATAGGCATCCATACTTTTTAGGTAACTTAGGTCAAATTGGAACG 774
BSNT_00744___ 775 AAGCCGGCTTACGAGGCAATGGAGGAATGTGATTTATTAATCATGCTCGG 824
||||||||.||.||.||.|||||.|||||||||.|.|||||.|||||.||
BPUM_0407___y 775 AAGCCGGCATATGAAGCGATGGAAGAATGTGATCTCTTAATTATGCTTGG 824
BSNT_00744___ 825 AACATCATTCCCGTACCGTGATTATTTGCCTGATGACACGCCGGCAATCC 874
.||.||.||.||.||..|.||.||.||.||.||.|||||||..||.||.|
BPUM_0407___y 825 CACCTCCTTTCCATATAGAGACTACTTACCAGAGGACACGCAAGCCATTC 874
BSNT_00744___ 875 AGCTCGAT------TCAGACCCGGCAAAAATCGGAAAACGGTATCCGGT- 917
|.||.||| .||||.| |||||||.|||.||||||||||
BPUM_0407___y 875 AACTGGATATTAAACCAGATC------AAATCGGTAAAAGGTATCCGGTA 918
BSNT_00744___ 918 GACAGCGGGCCTTGTCTGCGATTCGGC-----TCTCGGTCTGCGCGAATT 962
|| .|.|||..||||..|||| |.|| | |||.|||..|||.|
BPUM_0407___y 919 GA-TGTGGGAATTGTGAGCGA--CAGCAAGAGT---GGTTTGCATGAACT 962
BSNT_00744___ 963 GACAGAGTATATTGAACGCAAGGAAGACAGAAGATTCCT-GAATGCCTGC 1011
|||...|||.||||||...||.||..|..|..|.||.|| ||| ||.||.
BPUM_0407___y 963 GACTTCGTACATTGAATATAAAGAGCAGCGTGGCTTTCTCGAA-GCTTGT 1011
BSNT_00744___ 1012 ACAGAACATATGCAGCATTGGTG-GAACGAAATTGAAAAAGATGAGACAG 1060
|||||.||||||..|.|.|||.| ||| |||||.||.|||||..|..|.|
BPUM_0407___y 1012 ACAGAGCATATGATGAAGTGGCGAGAA-GAAATGGATAAAGAAAAATCTG 1060
BSNT_00744___ 1061 AGGCAACAACACCGCTTAAACCTCAGCAGGTCGTGGCCCGTCTTCAGGAA 1110
..||.||..|||||.|||||||.|||||.|||.|.||..|.||..|.|||
BPUM_0407___y 1061 TTGCTACTTCACCGATTAAACCACAGCAAGTCATTGCTAGACTAGAAGAA 1110
BSNT_00744___ 1111 GCGGCAGCCGATGATGCGGTGCTCTCTGTCGATGTCGGCACTGTGACAGT 1160
||.|..|..||.||.||..|.||.||.||.|||||.||.|.|||||||||
BPUM_0407___y 1111 GCAGTCGAGGACGACGCCATTCTTTCAGTTGATGTTGGTAATGTGACAGT 1160
BSNT_00744___ 1161 CTGGATGGCGCGTCATTTCAAAATGAACGCGAAC--CAGGATTTCATCGT 1208
.|||||||||||||||||..|||||| ||| |||||||||||..|
BPUM_0407___y 1161 ATGGATGGCGCGTCATTTTGAAATGA-----AACAGCAGGATTTCATTAT 1205
BSNT_00744___ 1209 CTCCAGCTGGCTTGCGACAATGGGCTGCGGCCTGCCGGGAGCGATCGCCG 1258
|||||||||||||||.||||||||.|||||..|.||.||.|||||..|.|
BPUM_0407___y 1206 CTCCAGCTGGCTTGCCACAATGGGTTGCGGTTTACCTGGTGCGATTTCAG 1255
BSNT_00744___ 1259 CAAGCTTGTCCGAACCGGAACGCCAGGCGATCGCTGTCTGTGGTGACGGG 1308
|.|..|||...||||||.|.||.||.||.||.||.||.||||||||.||.
BPUM_0407___y 1256 CTAAATTGAATGAACCGAACCGACAAGCCATTGCCGTTTGTGGTGATGGT 1305
BSNT_00744___ 1309 GGATTTTCCATGGTCATGCAGGATCTTCCGACCGCTGTCAAATATAAGCT 1358
||.||..|.|||||||||||.||..||..|||..|.||.||||||||.||
BPUM_0407___y 1306 GGCTTCACAATGGTCATGCAAGACTTTGTGACATCGGTAAAATATAAACT 1355
BSNT_00744___ 1359 CCCGATCACAGTCGTCATTTTAAACAACGAAAATCTTGGTATGATTGAGT 1408
.||.|||...||.||.||.|||||||||.||||.|||||.|||||.||.|
BPUM_0407___y 1356 GCCAATCGTTGTTGTGATCTTAAACAACAAAAACCTTGGAATGATCGAAT 1405
BSNT_00744___ 1409 ACGAGCAGCAGGTCAAAGGCAATATCGACTATGTCACAAAACTTCAAAAT 1458
|.||.||.|||||.|||||.||.||..|.||||..|.|.|.||..|..||
BPUM_0407___y 1406 ATGAACAACAGGTAAAAGGAAACATGAATTATGGTATAGAGCTGGAGGAT 1455
BSNT_00744___ 1459 GTCGACTATGCCGCATTTGCAGAAAGC-TGCGG-AGCAAAG--------- 1497
.|.||.|..|||...||||||| |||| ||.|| .||||||
BPUM_0407___y 1456 ATTGATTTCGCCAAGTTTGCAG-AAGCATGTGGCGGCAAAGGAATCTCCG 1504
BSNT_00744___ 1498 -GGCATCAAAGTGACTAAAGCGGAAGAGCTTGCGCCGGCATTCCATGAGG 1546
|.|||||.| .|||||..|.||.||.||.||..||...|
BPUM_0407___y 1505 TGTCATCACA-----------TGAAGAATTAGCTCCAGCCTTTGATACAG 1543
BSNT_00744___ 1547 CGCTGCACTCTGACCAACCGGTCGTTGTGGATGTCATGAT-TGGA-AACG 1594
|.||.||.||.||..||||.|||.||.|.|||||| |.| |.|| ||.|
BPUM_0407___y 1544 CCCTTCAATCCGATAAACCAGTCATTATCGATGTC--GCTGTAGACAATG 1591
BSNT_00744___ 1595 AACCGCCGCTTCCTGGCAAAATCACATACGGGCAGGCGAAAGGTTTTAGC 1644
||||.|||.|.|||||.||||||||.|||...||.||...|||.||.||.
BPUM_0407___y 1592 AACCTCCGTTACCTGGGAAAATCACTTACACCCAAGCAGCAGGATTCAGT 1641
BSNT_00744___ 1645 AAATACATGCTGAAAAACTTCTTCGAAAACCAAA----AAATTGAAATGC 1690
|||||..|..|||||||.|||||.||| ||| |..|.||.||.|
BPUM_0407___y 1642 AAATATTTATTGAAAAAATTCTTTGAA----AAAGGTGAGCTGGATATTC 1687
BSNT_00744___ 1691 CGTCACTGAAGAAAAGTTTGAAACGGTTATTTTAG 1725
|..||||.||||||||..|.|||||.||.||.||.
BPUM_0407___y 1688 CTCCACTCAAGAAAAGCCTCAAACGCTTTTTCTAA 1722
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