Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00701 and BPUM_0399
See
Amino acid alignment /
Visit
BSNT_00701 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00701___ycsA.1.24716.seq
# -bsequence dna-align/BPUM_0399___ycsA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00701___ycsA-BPUM_0399___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-BPUM_0399___ycsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: BPUM_0399___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 759/1116 (68.0%)
# Similarity: 759/1116 (68.0%)
# Gaps: 117/1116 (10.5%)
# Score: 2387.0
#
#
#=======================================
BSNT_00701___ 1 ATGAAACA--ATTCGAGATTGCGGCAATACCGGGATACGGTGTAGGAAAA 48
|||||.|| .||| .||||||||.|||||.||..||||.||.|||||.
BPUM_0399___y 1 ATGAAGCATGTTTC--AATTGCGGCGATACCAGGTGACGGGGTTGGAAAG 48
BSNT_00701___ 49 GAGGTTGTAGCGGCTGCTGA----------GAAAGTGCT-TCATACAGCC 87
||.||||||.|.|..|| || |||||.|.| |||
BPUM_0399___y 49 GAAGTTGTACCTGAAGC-GATACGAGTTTTGAAAGCGGTGTCA------- 90
BSNT_00701___ 88 GCTGAGGTACACGGAGGTTTGTCATT--CTCATTCACGGCTTTTCCATGG 135
||.|||||.||.|||.||||||| || .|||| ||.||||||.|||
BPUM_0399___y 91 ---GAAGTACATGGCGGTCTGTCATTTACT-TTTCA-GGATTTTCCTTGG 135
BSNT_00701___ 136 AGCTGTGATTATTACTTGGAGCACGGCAAAATGATGCCCGAAGATGGAAT 185
||||||||.|||||.||.|||||.|||.|.||||||||..|.||||||.|
BPUM_0399___y 136 AGCTGTGAATATTATTTAGAGCATGGCGAGATGATGCCAAAGGATGGATT 185
BSNT_00701___ 186 ACATACGCTTACTCAA---------TTTGA-AGCGGTTTTTTTGGGAGCC 225
..| |||| ||||| ||| .||||.||.||.||.
BPUM_0399___y 186 GGA---------TCAATTGAAAGCCTTTGACAGC-ATTTTCTTAGGGGCT 225
BSNT_00701___ 226 GTCGGAAATCCGAAGCTGGTTCCCGATCATATATCGTTATGGGGACTGCT 275
||||||.||.|.||..|.||.||.|||||..|||||.|.||||||.||||
BPUM_0399___y 226 GTCGGAGATGCCAATTTAGTGCCAGATCACGTATCGCTTTGGGGATTGCT 275
BSNT_00701___ 276 GCTGAAAATCCGGAGGGAGCTTGAGCTTTCCATTAATATGAGACCCGCCA 325
..|.|||||..||.|.||..||||.|.....|||||..|.|||||.||.|
BPUM_0399___y 276 TATTAAAATTAGGCGTGAATTTGAACAGGTGATTAACGTCAGACCTGCAA 325
BSNT_00701___ 326 AACA----AATGGCAGGCATTACG-TCGCCGCTTCTGCATCCAAATGATT 370
|||| ||.|| |.|||| ||.||||||..|||.|||||.||||
BPUM_0399___y 326 AACAGCTGAACGG-----AATACGCTCACCGCTTTCGCAGCCAAAGGATT 370
BSNT_00701___ 371 TTGA-CTTC--GTGGTGATTCGCGAGAACAGTGAAGGTGAATACAGTGAA 417
|.|| |||| ||.||.| |.||.|||.|||||||||||||.||||||
BPUM_0399___y 371 TCGACCTTCTAGTTGTCA---GAGAAAACGGTGAAGGTGAATATAGTGAA 417
BSNT_00701___ 418 GTCGGCGGGCGCATTCA-CAGAGGCGATGATGAAATCGCCATCCAGAATG 466
.|.||.||.||.|||.| || |||.||.|||.|..|.||..|.||.||||
BPUM_0399___y 418 ATTGGGGGACGTATTTATCA-AGGAGAAGATCAGCTTGCTGTTCAAAATG 466
BSNT_00701___ 467 CCGTGTTTACGAGAAAAGCGACAGAACGTGTCATGCGCTTTGCCTTCGAA 516
|.|||||..|.|||||||.||||||.||||.||||||.||||||||..||
BPUM_0399___y 467 CGGTGTTCTCAAGAAAAGGGACAGAGCGTGCCATGCGTTTTGCCTTTCAA 516
BSNT_00701___ 517 TTGGC-GAAAAAACGGCGCAGCCATGTGACAAGCGCCACAAAGTCTAACG 565
||.|| ||||||| |.||.|..||||||||.||.||.||.||.||.||.|
BPUM_0399___y 517 TTAGCAGAAAAAA-GACGAAAGCATGTGACGAGTGCAACCAAATCGAATG 565
BSNT_00701___ 566 GCATTTATCATGCGATGCCGTTTTGGGATGAAGTCTTTCAGCAGAC--AG 613
|.||...||||.|.|||||.||||||||||||||.||||| |||| ||
BPUM_0399___y 566 GGATCGTTCATACCATGCCTTTTTGGGATGAAGTGTTTCA--AGACGTAG 613
BSNT_00701___ 614 CCGCTGATTATAGCGGAATCGAAACATCA---TCTCAGCATATTGATGCG 660
|....|||||| .|.||| |..||..|| ||.|||||.||||||||.
BPUM_0399___y 614 CAAAGGATTAT-CCAGAA--GTGACCGCAGATTCACAGCACATTGATGCA 660
BSNT_00701___ 661 CTGGCCGCTTTTTTTGTGACGCGTCCGGAAACGTTTGATGTCATTGTGGC 710
||..|.||.||.|||||.|||.|.||.||.|..|||||||||||||||||
BPUM_0399___y 661 CTCTCAGCCTTCTTTGTCACGAGACCTGAGAAATTTGATGTCATTGTGGC 710
BSNT_00701___ 711 GAGCAACTTGTTCGGTGATATTTTAACCGACAT-----CAGCTCAAGCCT 755
.||.||.|||||.|||||||||||.||.||..| |||| |.|
BPUM_0399___y 711 CAGTAATTTGTTTGGTGATATTTTGACGGATCTTGGGGCAGC-----CAT 755
BSNT_00701___ 756 GATGGGAAGCATCGGCATTGCGCCTTCTGCGAACATCAA--TCCATCCGG 803
.|||||.||.||.||..|.||||||.|.||.|||||||| |..|| ||
BPUM_0399___y 756 TATGGGGAGTATTGGTGTAGCGCCTGCCGCCAACATCAATGTGAAT--GG 803
BSNT_00701___ 804 CAAATATCCGTCCATGTTTGAACCGGTTCACGGCTCAGCTCCTGACATTG 853
||||||.||.|||||||||||.||.||.|||||.||||||||.|||||||
BPUM_0399___y 804 CAAATACCCATCCATGTTTGAGCCTGTACACGGATCAGCTCCAGACATTG 853
BSNT_00701___ 854 CCGGACAGGGCCTTGCCAATCCGATTGGCCAGATTTGGACAGCGAAGCTG 903
|.|||.|.||..||||.||.|||||.|||||.||.|||||.||.||.||.
BPUM_0399___y 854 CGGGAAAAGGAATTGCTAACCCGATCGGCCAAATCTGGACGGCTAAACTC 903
BSNT_00701___ 904 ATGCTCGACCACTTCGGAGAGGAAGAGCTGGGGGCGAAAATTCTGGATGT 953
|||||.||.||.||||||||||||||.|||||..|..|..|.||.||...
BPUM_0399___y 904 ATGCTGGATCATTTCGGAGAGGAAGAACTGGGCACTCATCTGCTCGAAAC 953
BSNT_00701___ 954 AATGGAGCAAGTGACTGCCGACGGCATCAAAACACGC-GACATTGGGGG- 1001
.||.||...|||.||.||.||||||.|...|||| || |||||.||.||
BPUM_0399___y 954 CATCGAATCAGTTACAGCAGACGGCTTTTTAACA-GCAGACATCGGCGGC 1002
BSNT_00701___ 1002 -----ACAAAGCACAACGGCTGAGGTCACTGATGAAATCTGTTC--GCGC 1044
.|||| |.||| ||.|||||..|.|||||| .|| .||.
BPUM_0399___y 1003 GCCTATCAAA-CGCAA-----GAAGTCACAAACGAAATC--ATCAAACGA 1044
BSNT_00701___ 1045 TT-AAGAAAGCTCTGA 1059
|| |||||| |.|
BPUM_0399___y 1045 TTGAAGAAA----TAA 1056
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.