Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04191 and BPUM_0376
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04191___ysfE.1.24716.seq
# -bsequence dna-align/BPUM_0376.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04191___ysfE-BPUM_0376.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04191___ysfE-BPUM_0376.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04191___ysfE
# 2: BPUM_0376
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity: 169/408 (41.4%)
# Similarity: 169/408 (41.4%)
# Gaps: 195/408 (47.8%)
# Score: 438.0
#
#
#=======================================
BSNT_04191___ 0 -------------------------------------------------- 0
BPUM_0376 1 ATGAAAATGAAATATACCATTCTATATGTAAACGATGTTGAGGCAAGTAT 50
BSNT_04191___ 1 --------------------------------------------TTG--- 3
|||
BPUM_0376 51 TCATTTTTATCAACATGTACTTGGCTTTCCTATGAAACTCAGAGTTGAAT 100
BSNT_04191___ 4 --------GCGCTTAATACGCGGGAAAGCGCCAGAGAC------------ 33
|.|.||.||||..|.|| .|.|||
BPUM_0376 101 CCTATGTTGAGTTTGATACTGGAGA-------TGTGACCTTATCAATTAA 143
BSNT_04191___ 34 ATCACG----------------GCGC-TGGACATT-------CCGGATAC 59
.||||| |||| ||| ||| ||.||..|
BPUM_0376 144 CTCACGTCAGGATGTCAAAGATGCGCTTGG--ATTACCTGTCCCAGAAGC 191
BSNT_04191___ 60 --ATC--TGCT-TCAAACACATTTGAAATCGGGTTTGTTACTGAAAATGT 104
||| .||| |||| ||.||||||||.|||||||||...||..||||
BPUM_0376 192 CAATCAAGGCTCTCAA--ACGTTTGAAATTGGGTTTGTTGTGGATGATGT 239
BSNT_04191___ 105 AGAA---------GCGGTCATCAAAAGGATGAGAGAACAAGGCGTATCGA 145
.||| | ||||| ||||..|||.||||.||.||||
BPUM_0376 240 GGAACAAACCATTG----CATCA-----ATGAAGGAAAAAGGGGTTTCGA 280
BSNT_04191___ 146 TTATCGGGGAGC---CGAAAGTGAAACCATGGGGGCAGACGGTCGCCTAT 192
|.||....||.| |.||| ||||||||||||||.||.|||||.|||
BPUM_0376 281 TCATTAAAGAACCTGCAAAA---AAACCATGGGGGCAAACCGTCGCTTAT 327
BSNT_04191___ 193 ATCGCTGATCCGGATGGACATTATATCGAAAT-----TTGCAG--TCCGA 235
.||||||||||.|||||.||||..||.||||| .|||.| |||
BPUM_0376 328 GTCGCTGATCCTGATGGTCATTTCATTGAAATATGTGATGCCGTCTCC-- 375
BSNT_04191___ 236 TGGAATAA 243
|||
BPUM_0376 376 -----TAA 378
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