Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00700 and BPUM_0371
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:28
# Commandline: needle
# -asequence dna-align/BSNT_00700___mtlD.1.24716.seq
# -bsequence dna-align/BPUM_0371___mtlD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00700___mtlD-BPUM_0371___mtlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00700___mtlD-BPUM_0371___mtlD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00700___mtlD
# 2: BPUM_0371___mtlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1203
# Identity: 767/1203 (63.8%)
# Similarity: 767/1203 (63.8%)
# Gaps: 162/1203 (13.5%)
# Score: 2145.0
#
#
#=======================================
BSNT_00700___ 1 ATGATCGC-CTTACATTTCGGTGCGGGAAATATCGGGAGAGGATTTATCG 49
||||..|| ||| |||||.||.||.||.|||||.||.|||||.|||||||
BPUM_0371___m 1 ATGAAGGCACTT-CATTTTGGAGCAGGGAATATTGGCAGAGGGTTTATCG 49
BSNT_00700___ 50 GCGCGCTGCTTCACCAC-TCCGGCTATGATGTGGTGTTTGCGGATGTGAA 98
|..|..|| ||.|..|| ||.||.|.|||..|.||.|||.|.|||||.||
BPUM_0371___m 50 GATCTTTG-TTAAAAACATCAGGTTTTGAGCTTGTCTTTACCGATGTAAA 98
BSNT_00700___ 99 CGAAACGATGGTCAGCCTCCTCAATGAAAAAAAAGAATACACAGTGGAAC 148
.|||.||.|..|||.|...||.||||.|..|..|||||||||.||.||||
BPUM_0371___m 99 TGAAGCGGTCATCAACGAGCTGAATGCACGAGGAGAATACACGGTTGAAC 148
BSNT_00700___ 149 TGGC-GGAAGAGG---GACGTTCATCGGAGATCATTGGCCCGGTGAGCGC 194
|.|| |.|..||| ||.| || .||.||..|.|||||.||||..||
BPUM_0371___m 149 TCGCAGCACCAGGTCAGAAG--CA--AGAAATAGTCGGCCCAGTGACAGC 194
BSNT_00700___ 195 TATTAA--------------CAGCGGCAGTCAGACCGAGGAGCTGTACCG 230
.||||| ||||||||.| .||.||| ||||| |
BPUM_0371___m 195 GATTAATTCTGCACAAGATCCAGCGGCATT--AACAGAG--GCTGT---G 237
BSNT_00700___ 231 GCTGATGAATGAGGCG----GCGCTCATCACAACAGCTGTCGGCCCGAAT 276
|| ||.||.|| | ||.|||||||||||.||.||...|
BPUM_0371___m 238 GC------ATCAGCCGATTTG-----ATTACAACAGCTGTTGGACCAGCT 276
BSNT_00700___ 277 GTGCTGAAGCTGATTGCCCCGTCTATCGCAGAAGGTTTAAGACGAAGAAA 326
||..|||||.|.|||||..|.||.||.|||||.||..|||.|| |||||
BPUM_0371___m 277 GTTTTGAAGATCATTGCTTCATCCATTGCAGAGGGACTAAAAC--AGAAA 324
BSNT_00700___ 327 TA--CTGCAAACACA--CTGAATATCATTGCCTGCGAAAATATGATTGGC 372
.| ||| |.||.| .|.||.|||.|.||.||.||||||||||||
BPUM_0371___m 325 AACCCTG--ACCATATTATCAACATCGTGGCATGTGAAAATATGATT--- 369
BSNT_00700___ 373 GGAAGCAGCT-TC--TTAAAGAAAGAGATATACAGC----------CATT 409
|||.|||||| || ||||| ||| ||| |||.
BPUM_0371___m 370 GGAGGCAGCTCTCATTTAAA-----AGA-----AGCTGTTTTCTCTCATC 409
BSNT_00700___ 410 TAACGGAAGCAGAGCAGAAA---TCCGTCAGTGAAACGGTAGGTTTTCCG 456
|.||.||||..||.|| ||| .|.|||| .||||.||.||||||||.
BPUM_0371___m 410 TCACAGAAGAGGAACA-AAAGGCGCTGTCA--CAAACAGTTGGTTTTCCA 456
BSNT_00700___ 457 AATTCTGCCGTTGACCGGATCGTCCCGATTCAGCATCATGAAGACCCGCT 506
||..||||.||.|||||.||.||.|||||||||||.|||||.||....||
BPUM_0371___m 457 AACGCTGCTGTGGACCGCATTGTACCGATTCAGCACCATGAGGATATTCT 506
BSNT_00700___ 507 GAAAGTATCGGTTGAACCATTTTTCGAATGGGTCATTGATGAATCAGGCT 556
.||||||||.||.||.||.||||||||.||||||||||||||..|.||||
BPUM_0371___m 507 AAAAGTATCAGTCGAGCCTTTTTTCGAGTGGGTCATTGATGAGACTGGCT 556
BSNT_00700___ 557 TTAAAGGGAAAAC--ACCAGTCATAA---ACGGCGCACTGTTTGTTGATG 601
|||..|| |.|| .|| ||| || ||||.|||...|||||..|.|
BPUM_0371___m 557 TTATCGG--AGACGTTCC--TCA-AATTGACGGAGCAACCTTTGTACAAG 601
BSNT_00700___ 602 ATTTAACGCCGTACATCGAACGGAAGCTGTTTACGGTCAATACCGGACAC 651
||||.||||||||.||.||.||.|||||.|||||.||||||||.|||||.
BPUM_0371___m 602 ATTTGACGCCGTATATTGAGCGCAAGCTCTTTACTGTCAATACAGGACAT 651
BSNT_00700___ 652 GCGGTGACAGCGTATGTCGGCTATCAGCGCGG-ACTCAAGACGGTCAAAG 700
|||.|..||||.||||||||.|||||||..|| ..|||| |||.|.||||
BPUM_0371___m 652 GCGCTAGCAGCTTATGTCGGGTATCAGCAAGGTGTTCAA-ACGATTAAAG 700
BSNT_00700___ 701 AAGCAATCGAT-CATCCGGAAATCCGCCGTGTCGTTCATTCGGCGCTGCT 749
||||..||||| || ||.||.||.||.|..||.|||.|....||.||.|.
BPUM_0371___m 701 AAGCCGTCGATACA-CCAGAGATTCGTCAGGTAGTTGAAGGTGCACTTCA 749
BSNT_00700___ 750 TGAAACTGGTGACTATCTCGTCAAATCG-----TATGGCTTTAAGCAAAC 794
.|||||.||....|||.| ||||| ||.||||||||..||..
BPUM_0371___m 750 CGAAACGGGCAGTTATTT-----AATCGACACATACGGCTTTAAAAAAGA 794
BSNT_00700___ 795 TGAACACGAACAATATATCAAAAAAATCATCGGTCGCTTTGAAAATCCTT 844
.|||||.||....|||||..|||||||||||...||.||.||||||..||
BPUM_0371___m 795 AGAACATGATGCGTATATACAAAAAATCATCAAACGATTCGAAAATGTTT 844
BSNT_00700___ 845 TCATTTCGGACGATGTGACCCGCGTAGCGAGGTCACCTCTCAGAAAACTG 894
|.|||||.||.||.||.||.||.||.||..|.||.|||||.|||||.||.
BPUM_0371___m 845 TTATTTCCGATGAAGTCACTCGTGTCGCACGCTCTCCTCTTAGAAAGCTA 894
BSNT_00700___ 895 GGAGAAAATGATAGGCTTGTAGGCCCGGCAAAGAAAATAAAAGAACCGAA 944
||||.|.||||..|..|..|.||.||.||.||.||.|| .|||.|.|.|.
BPUM_0371___m 895 GGAGCAGATGACCGTTTAATCGGTCCTGCGAAAAAGAT-GAAGCAGCCAG 943
BSNT_00700___ 945 TGCACTGGCGG------AAGGAATTGCCGCAGCACTGCGCTT-CGATTTC 987
||.||| ||||.|||||.|||||.|| .|||| .||.||.
BPUM_0371___m 944 TGTACT-----TAATCAAAGGCATTGCTGCAGCTCT-TGCTTATGACTTT 987
BSNT_00700___ 988 ACCGGTGACCCTGAAGCGGTT--------GAACTGCAAGCGCTGATCGAA 1029
.|||..|||...||||||||| |||.| |.|...||
BPUM_0371___m 988 GCCGAAGACGAAGAAGCGGTTCGTTTGCAGAAAT--------TAAGAAAA 1029
BSNT_00700___ 1030 GAAAAAGG-ATACAGCGGCGTACTTCAAGAGGAGTGCGGCATTCAGTCCC 1078
|||||||| ||..| .||.||.||..||||.|..||.||| .|||..||
BPUM_0371___m 1030 GAAAAAGGCATTGA-AGGTGTGCTAGAAGAAGTATGTGGC-CTCACGCC- 1076
BSNT_00700___ 1079 ATGAACCGTTG--------CACGCCATCATTTTAAAGAAACTTAA-TCAA 1119
|||.|.|| ||.||||| |.|.|||||||| || ||.|
BPUM_0371___m 1077 ---AACAGATGATCTTTATCAAGCCAT--TCTGAAAGAAAC--AACTCGA 1119
BSNT_00700___ 1120 TAA 1122
|||
BPUM_0371___m 1120 TAA 1122
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