Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00693 and BPUM_0368
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:28
# Commandline: needle
# -asequence dna-align/BSNT_00693___ycnJ.1.24716.seq
# -bsequence dna-align/BPUM_0368___ycnJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00693___ycnJ-BPUM_0368___ycnJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00693___ycnJ-BPUM_0368___ycnJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00693___ycnJ
# 2: BPUM_0368___ycnJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1859
# Identity: 1045/1859 (56.2%)
# Similarity: 1045/1859 (56.2%)
# Gaps: 457/1859 (24.6%)
# Score: 2344.5
#
#
#=======================================
BSNT_00693___ 1 ---ATGAAGCGAAACAGATGGTGGATCATTCTTCTG-------CTTTTTC 40
.|||| |.|.||...||||.|..|.|||||| |.||..|
BPUM_0368___y 1 TTGTTGAA---ACATAGTAAGTGGCTTCTGCTTCTGATCATCACGTTCGC 47
BSNT_00693___ 41 TTGTTTTCCTGCCGAAAACAAGC-TTTGCTCACGCCTATATTGTCA---- 85
|| |||||.|.|| |||..|||| |||||.||.||.||..|.||||
BPUM_0368___y 48 TT-TTTTCATTCC-AAAGGAAGCATTTGCCCATGCATACGTCGTCAGTTC 95
BSNT_00693___ 86 -AATCTTCACCTGGGGAA---AACAGCGAATTAAAAAGC-GCC-CCTGCG 129
|||| ||.|| |.|| ||.||| |..|.|||| ||| |||.|
BPUM_0368___y 96 GAATC--CAGCT--GCAAATGAAGAGC---TGGAGAAGCAGCCTCCTTC- 137
BSNT_00693___ 130 CAGGTGGAAATCGAATTTAATGAACCGG--TTGAAGAAGGGTTTCATTAC 177
|||....|||..|||||.|||| || |.|||...||.||||||..|
BPUM_0368___y 138 --GGTCTCTATCACATTTAGTGAA--GGAATCGAAAGTGGATTTCATGCC 183
BSNT_00693___ 178 ATTAAAGTCTTTAATTCAAACGGCGACCGTGTGGATACGGACAAGACTGA 227
|||||.||..|.|||.||||.||.||.||||||||| |||| ||
BPUM_0368___y 184 ATTAAGGTGCTAAATGCAAAAGGGGATCGTGTGGAT-----CAAG---GA 225
BSNT_00693___ 228 AA-----TCAAAAAAGATAATCATCACATCATGACAGTGAAGCTG----- 267
.| |||..|||| ||||..|.|||||| |||||||
BPUM_0368___y 226 GATACGGTCATTAAAG---ATCAAAAAATCATG-----GAAGCTGCTTTA 267
BSNT_00693___ 268 AAGAAGAATCTGCCTCA--TGATGTGTA-----CAGAGCGGAATGGAATG 310
||.|||.||.|.||..| .|||.|.|| ||| |||||||
BPUM_0368___y 268 AAAAAGGATTTACCAAAGGGGATTTATACCATTCAG-------TGGAATG 310
BSNT_00693___ 311 CCGTATCCGCGGACGGGCATCCTGTTTCTGGCGTCATTCCGTTTAGTATT 360
|.|||||.||.|||||.||..||||.|||||..|.||.||||||||||||
BPUM_0368___y 311 CAGTATCAGCAGACGGTCACTCTGTCTCTGGTATGATCCCGTTTAGTATT 360
BSNT_00693___ 361 GGGAAAGCGGATGGCGGATTCAGCAGCCAAA-------AAG--CAGCCG- 400
||.||||||||||||||.|| .|.|.|| ||| ||.|||
BPUM_0368___y 361 GGCAAAGCGGATGGCGGTTT----TGACCAATTAGATCAAGGTCAACCGA 406
BSNT_00693___ 401 ACTCAGCTCTGAAT----CCGGGAACAGCAG-CAGATCGCGCGATTCTGT 445
||..|.||.|..|| ||..||.|| .|| ||.| ||..||||.|
BPUM_0368___y 407 ACGAATCTATTGATGTTGCCTCGACCA-TAGACAAA----GCCTTTCTTT 451
BSNT_00693___ 446 ATACAGCCTTATCTCTGTTTATCGGAACGGTTTTCTTCCATCTTTTCTGG 495
||||..|.||...|.|.|||.||||.||..||||.||....||.||.|||
BPUM_0368___y 452 ATACGTCGTTTAGTTTATTTCTCGGGACCATTTTGTTTGGACTGTTATGG 501
BSNT_00693___ 496 TATAAAGGGAAATCAGAACAGTTC----------GTCAAACGGACGAGAC 535
|.| .||| ||| .||.||| |..|||||.|.|||||
BPUM_0368___y 502 TTT--CGGG----CAG-CCATTTCACCTATATTAGCGAAACGAATGAGAC 544
BSNT_00693___ 536 GTATCCTGACCGGCTC---GATCGCAGCATTGGGGCTGGCGCTTT--TGC 580
|..|..||||....|| ||| ||..|| |||| ||.|||.| ||.
BPUM_0368___y 545 GGCTTTTGACATTGTCACTGAT--CATGAT--GGGC-GGAGCTCTCGTGT 589
BSNT_00693___ 581 TTCAGCTTCCGATTCAGACAAA---AGCGAACGCAGGCGACGGC----TG 623
|||||||.||||||||.||.|| |||| ||||.||....| ||
BPUM_0368___y 590 TTCAGCTGCCGATTCAAACCAAATCAGCG---GCAGACGTTTCCTTTTTG 636
BSNT_00693___ 624 GGGCAGCGCATTCCAGCC-GGGCTACATCAGAGAAA-CACTGTTTGAGAC 671
| |.|||||.||||| ..|||.|..|| ||||| ||.||..| .|||
BPUM_0368___y 637 G----GAGCATTTCAGCCATCGCTTCTGCA-AGAAACCATTGCGT-CGAC 680
BSNT_00693___ 672 AGCAGGCGGCTCCATT-TGGATCATACAGGCCGCTC----TG---TTCGT 713
..|.||||| |...|| |||||.|| |||| || ||.||
BPUM_0368___y 681 TTCTGGCGG-TAGTTTGTGGATGAT-------GCTCATGGTGTCATTTGT 722
BSNT_00693___ 714 GCTCCTCGCACTGTCTG--TCATTCCTGCGATACGGAAAA---------- 751
.||.|| .||..|||| .|||...|||||| |||||
BPUM_0368___y 723 TCTACT--AACCATCTGGAGCATCGTTGCGAT---GAAAAAAGGGGATTT 767
BSNT_00693___ 752 -ACCGCTTTTCATCCTTTGGCTAT--TGGATAGCGCCGCTCATTTTC--- 795
||..||||||| |.||| |.|.|..|.|.||||.|.|||
BPUM_0368___y 768 TACTTCTTTTCA-------GGTATGGTTGTTTCCACTGCTCCTATTCGCA 810
BSNT_00693___ 796 -TTTTTCGGTCT-CCTGCTTGC-CAAGGCGTTTACCGGGCATGCCGCTG- 841
|..||| ||| .|||...|| |||..||...|||..||| ||..|||
BPUM_0368___y 811 GTACTTC--TCTGGCTGAAAGCACAAATCGGACACCCAGCA-GCAACTGA 857
BSNT_00693___ 842 TCGTTGAAGAAAAAACGG---TCGGCATTTTGATGGATTTCCTTCATTTA 888
| ||.||||.||.| .||.||.|| |||||..|.|||.|.
BPUM_0368___y 858 T-----AATAAAATACTGACAACGTCACTT-----GATTTTATCCATCTC 897
BSNT_00693___ 889 ACTTCCGCTTCCATCTGGGTTGGCGGAATAGCGGCACTCGTTTTGCT--- 935
..|||.||.||.||||||||.||.||..||.|.|| |.||.||||
BPUM_0368___y 898 GTTTCTGCATCGATCTGGGTCGGTGGTTTAACAGC---CATTGTGCTTTT 944
BSNT_00693___ 936 ------------GCTCTCAAAAGAATGGAG-GCAGCCTGACAAAACGCTC 972
|||..|| ||||||| .|||| |||||
BPUM_0368___y 945 ATTGTTGAAGAAGCTGCCA----AATGGAGATCAGC---------CGCTC 981
BSNT_00693___ 973 GCGTGGGAGACGGT-CAGACGGTTCTCCCCATGGGC---GCTCACTGCAG 1018
....|..|.|||.| .||.||.||| .|||.||||| ||||.|| |
BPUM_0368___y 982 ATCAGAAATACGTTAAAGGCGTTTC-ACCCTTGGGCACTGCTCTCT---G 1027
BSNT_00693___ 1019 TCGGCGTCATTTTGTTTTCAGGCTTGCTCAATGGATTTTTCAT----CAT 1064
|.||..|||||.||||||||||.||..|.||||.|.|.||.|| ||.
BPUM_0368___y 1028 TTGGACTCATTGTGTTTTCAGGATTTGTGAATGCAATCTTTATTTTGCAA 1077
BSNT_00693___ 1065 TCGTTCAATGGATTCACTGTTCCATACAGCGTATGG-CCAAGCTCTTTTA 1113
|||| |.|||.|.||.|||.|..||||.||.|| |.||.|| |||||
BPUM_0368___y 1078 TCGT----TTGATGCTCTTTTCGAATCAGCATACGGACGAACCT-TTTTA 1122
BSNT_00693___ 1114 GTGAAAAGCGGGCT--GTTTGTTT-TCATGCTGG----TCTTAGGC---G 1153
.|.|| ||| ||||.||| ||.||.||| ||||.||| .
BPUM_0368___y 1123 ATCAA------GCTTGGTTTATTTATCTTGATGGGCCTTCTTGGGCTTGT 1166
BSNT_00693___ 1154 CGATTCATTTTCTGCTTACCAG------AAAGCAGCGCCGCACAGGAATC 1197
|.||| |.||..|||| ||| ||||.| ||||.||
BPUM_0368___y 1167 CCATT-ACTTGATGCT---CAGATGGGAAAAGAA-------ACAGAAA-- 1203
BSNT_00693___ 1198 AGCCGAA------CGTTGAAAGCGGAGTGGGCAATCGGCATCGCTGTATT 1241
|||| ||||....||.||||||...|||||.||||||.|.||
BPUM_0368___y 1204 ---CGAAACGTTTCGTTACGTGCTGAGTGGATGATCGGAATCGCTATTTT 1250
BSNT_00693___ 1242 GATCACAGCGGCCGTGTTTACAAGCCTGCCAAGCCCGCCTGAGCCAGCGC 1291
|.|...|.|.||.||||||||.|...|.|||||.||.|||..|||.||.|
BPUM_0368___y 1251 GTTATTAACAGCTGTGTTTACCAATATTCCAAGTCCTCCTCCGCCTGCAC 1300
BSNT_00693___ 1292 CGGAACCGTTCTAC----CAAACCAAAGCGATTGAG-AACG-GACAAAGC 1335
|.||.|||||||.| |||||||| .|.||| |.|| ||||
BPUM_0368___y 1301 CTGAGCCGTTCTTCGGCGCAAACCAA----GTGGAGCATCGTGACA---- 1342
BSNT_00693___ 1336 GTTTCTCTC----AGCATCA-GCCCAAACCAGCCC---GGAAAAA---AT 1374
||.|.|| |||||.| |||.|| .|||| ||||||| |
BPUM_0368___y 1343 --TTGTGTCCATGAGCATAACGCCGAA---TGCCCCGGGGAAAAACACA- 1386
BSNT_00693___ 1375 GTTTTTGAGCT-GCGTGTCACCGACCATAACGGAGATCCCGT-GAAAAAC 1422
||.|||.| ||.|.| ||.|.||.||| | ||.||||
BPUM_0368___y 1387 ---TTCGAGGTCGCATTT-----ACGAAAAAGGA-------TGGACAAAC 1421
BSNT_00693___ 1423 ATCCAGCAAATCAC-GTTAACCGTTTATAAAACAGGTCTGTCAGGCAGCG 1471
.||||| |.||.|| || ||||| |.|.||.
BPUM_0368___y 1422 --------GATCACTGATATCC--------AA----TCTGT--GTCGGCC 1449
BSNT_00693___ 1472 AAAA--CA-AAAG-CACCTTTACATT-----AAAAGAAA----------- 1501
||.| || |||| |.|||| ||| ||.|||||
BPUM_0368___y 1450 AAGATCCATAAAGTCGCCTT---ATTCGGTGAAGAGAAACCGAGTGAATT 1496
BSNT_00693___ 1502 -------AAAC------AAAAGGCGTC-TTCCAGGATC-----AAAACCT 1532
|||| ||||.| ||| ||.| || |||||||
BPUM_0368___y 1497 TCAGCTGAAACGATTAAAAAATG-GTCATTAC----TCTGCTGAAAACCT 1541
BSNT_00693___ 1533 GTCGATTAATGAAAAAGGAAACTGGAAGATCAAAGTCCACGGCCTGACCG 1582
.|.|.|.|||||||||||.|..|||||.||..||.||||.|
BPUM_0368___y 1542 CTTGTTAAATGAAAAAGGCACTTGGAAAATTGAAATCCATG--------- 1582
BSNT_00693___ 1583 GCGACTTTAAC----------GAA---ATCAATATCATGTTTA--CAAAG 1617
|.||||| ||| |||.|||.||..|||| ..|||
BPUM_0368___y 1583 ----CGTTAACTGGTTCTTTTGAAAATATCGATACCACATTTATTAGAAG 1628
BSNT_00693___ 1618 ACCAATTAA 1626
| ||.|||
BPUM_0368___y 1629 A--AACTAA 1635
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