Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00686 and BPUM_0362
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:28
# Commandline: needle
# -asequence dna-align/BSNT_00686___gabT.1.24716.seq
# -bsequence dna-align/BPUM_0362___gabT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00686___gabT-BPUM_0362___gabT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00686___gabT-BPUM_0362___gabT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00686___gabT
# 2: BPUM_0362___gabT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1340
# Identity: 986/1340 (73.6%)
# Similarity: 986/1340 (73.6%)
# Gaps: 52/1340 ( 3.9%)
# Score: 3411.5
#
#
#=======================================
BSNT_00686___ 1 ATGAGTCAAACAACAGTAA---GCATAACAACTGCACAATGGCAGCAAAA 47
|||||||||||.|||..|| |..|..||||||...||||||||...||
BPUM_0362___g 1 ATGAGTCAAACGACAACAAACCGTTTTTCAACTGAGGAATGGCAGGGGAA 50
BSNT_00686___ 48 ACGGGATCAATTTGTGTCAAAAGGTGTGAGCAACGGCAACCG-CAGTCTG 96
|.|.|||||||..||..|||.|||.|||||.||.|||||||| || |||.
BPUM_0362___g 51 AAGAGATCAATACGTCGCAAGAGGCGTGAGTAATGGCAACCGTCA-TCTT 99
BSNT_00686___ 97 GCGGTCAAAGGAGAAGGG-GCCGAGCTGTACGATCTGGATGGCCGGA--- 142
||.| ||||||.|||||| ||||||||.|.||||.|.|||| |||
BPUM_0362___g 100 GCAG-CAAAGGGGAAGGGTGCCGAGCTATTCGATATCGATG---GGAAAC 145
BSNT_00686___ 143 GATTTATTGATTTTGCAGGCGCCATCGGCACGTTAAATGTCGGACACTCG 192
|.|||||.||||||||.|||||.||.||.|||||||||||.|||||.||.
BPUM_0362___g 146 GTTTTATCGATTTTGCTGGCGCGATTGGTACGTTAAATGTAGGACATTCA 195
BSNT_00686___ 193 CATCCGAAGGTGGTTGAGGCTGT-GAAGCGGCAGGCGGAGGAG-CTGATT 240
|||||.|||||.||.||.||||| .|||| .|||||.|| .|| ||||||
BPUM_0362___g 196 CATCCAAAGGTTGTGGAAGCTGTCAAAGC-ACAGGCAGA-CAGTCTGATT 243
BSNT_00686___ 241 CATCCTGGTTTTAATGTCATGATGTACCCGA--CTTATATCGAGTTAGCC 288
||.||.||.||.||.||.|||||||| ||| |.||||||||.||.||.
BPUM_0362___g 244 CACCCAGGCTTCAACGTGATGATGTA--CGAATCGTATATCGAATTGGCA 291
BSNT_00686___ 289 GAAAAACTGTGTGGCATTGCACCGGGCAGCCATGAGAAAAAAGCGATTTT 338
||.||.||.|||..|.|..||||.||...||||||.||||||||.|||||
BPUM_0362___g 292 GAGAAGCTATGTCACCTCACACCAGGTGACCATGACAAAAAAGCCATTTT 341
BSNT_00686___ 339 TCTTAACTCAGGGGCGGAAGCAGTCGAAAACGCTGTGAAAATCGCCAGAA 388
.|||||.|||||.||.|||||.||.||.||.||.||||||||.||..|.|
BPUM_0362___g 342 CCTTAATTCAGGTGCAGAAGCTGTTGAGAATGCGGTGAAAATTGCACGTA 391
BSNT_00686___ 389 GGTATACAAAGCGCCAAGGCGTTGTCTCGTTTACACGCGGGTTTCACGGG 438
..|||||.||..|.||.|.||||||.|||||||||.|.||.||.|||||.
BPUM_0362___g 392 AATATACGAAAAGGCAGGCCGTTGTGTCGTTTACAAGAGGCTTCCACGGC 441
BSNT_00686___ 439 CGCACGAATATGACGATGAGCATGACAAGCAAGGTAAAACCTTATAAATT 488
.|.|||||||||||||||||||||||.||.|||||.||.||.||.|||||
BPUM_0362___g 442 AGAACGAATATGACGATGAGCATGACGAGTAAGGTCAAGCCATACAAATT 491
BSNT_00686___ 489 CGGTTTCGGACCTTTTGCGCCAGAGGTTTATCAAGCGCCGTTCCCTTATT 538
.||.||||||||.||||||.|||||||.|||||||||||.|.|||.||||
BPUM_0362___g 492 TGGGTTCGGACCATTTGCGTCAGAGGTGTATCAAGCGCCATACCCATATT 541
BSNT_00686___ 539 ATTATCAGAAGCCGGCCGGCATGAGTGATGAAAGCTATGACGA-TATGGT 587
|.|||||||||||.|..||..|.||.||||.|..|||.||.|| || ..|
BPUM_0362___g 542 ACTATCAGAAGCCAGAAGGATTAAGCGATGCAGCCTACGATGAGTA-CAT 590
BSNT_00686___ 588 CATTCAAGCATTCAATGATTTCTTTATCGCTTCAGTGGCGCCTGAAACGG 637
||||.|...|||||||.|.||.||..|||||.|.||.||.||.|||||.|
BPUM_0362___g 591 CATTGATCAATTCAATCAATTTTTCGTCGCTACTGTTGCACCAGAAACTG 640
BSNT_00686___ 638 TGGCGTGTGTCGTGATGGAGCCAGTGCAGGGAGAAGGCGGATTTATTATT 687
|.||||||||.||.|||||||||||.||.||.||.||||||||.|||.|.
BPUM_0362___g 641 TTGCGTGTGTGGTCATGGAGCCAGTCCAAGGGGAGGGCGGATTCATTGTA 690
BSNT_00686___ 688 CCTTCGAAACGGTTCGTACAGCACGTCGCTTCATTCTGCAAAGAACACGG 737
||.|||||.||.||.||.|||||.||.|||||||||||..|..|.|||||
BPUM_0362___g 691 CCATCGAAGCGTTTTGTTCAGCATGTTGCTTCATTCTGTCAGCAGCACGG 740
BSNT_00686___ 738 CATTGTTTTTGTTGCTGATGAAATCCAAACCGGCTTTGCCAGAACTGGCA 787
.|||||.|||||.||.||||||||||||||.||||||||.|||||.||.|
BPUM_0362___g 741 GATTGTGTTTGTAGCAGATGAAATCCAAACAGGCTTTGCAAGAACAGGGA 790
BSNT_00686___ 788 CTTATTTCGCAATTGAGCACTTTGATGTAGTGCCCGATCTGATCACGGTT 837
..||.||.||.|||||||||||||||||.|||||.||..|.|||||.||.
BPUM_0362___g 791 AATACTTTGCGATTGAGCACTTTGATGTGGTGCCGGACTTAATCACTGTG 840
BSNT_00686___ 838 TCTAAATCGCTTGCGGCAGGCCTGCCATTAAGCGGTGTGATTGGGCGTGC 887
||.|||||.|||||.||.||..|||||.|||||||.||..|.| ||
BPUM_0362___g 841 TCAAAATCTCTTGCTGCTGGGTTGCCACTAAGCGGCGTTGTCG-----GC 885
BSNT_00686___ 888 GGAAA-----TGCTTGATGCGGCAGCGCCAGGGGAGCTGGGCGGCACGTA 932
.|||| |||||||||||||||..|||||||||||.||.||.||.||
BPUM_0362___g 886 AGAAAAGAACTGCTTGATGCGGCAGATCCAGGGGAGCTAGGGGGAACATA 935
BSNT_00686___ 933 TGCCGGCAGCCCGCTCGGCTGCGCGGCGGCTTTGGCAG-TCTTGGATATT 981
.||.||.||.||..|.|||||.|.|||.||.||.|||| |||| ||||||
BPUM_0362___g 936 CGCAGGAAGTCCATTAGGCTGTGTGGCAGCATTAGCAGTTCTT-GATATT 984
BSNT_00686___ 982 ATTGAAGAAGAAGGACTGAATGAGCGATCTGAAGAAATTGGCAAAATCAT 1031
||||||..||||..|||||||.|.|||||||||.|.||.||..||.||||
BPUM_0362___g 985 ATTGAAACAGAACAACTGAATCAACGATCTGAACACATCGGACAAGTCAT 1034
BSNT_00686___ 1032 TGAAGACAAGGCGTATGAGTGGA-AACAAGAATTCCCGTTCATCGGTGAC 1080
|||.|||||.||..||.|.|||| ||||| |||..||.|||||.||.||.
BPUM_0362___g 1035 TGAGGACAAAGCAAATCATTGGAGAACAA-AATATCCATTCATTGGGGAA 1083
BSNT_00686___ 1081 ATCCGCAGACTCGGGGCGATGGCCGCAATCGAAATCGTCAAGGATCCTGA 1130
.|||||.|..|.|||||.|||||.|||||.|||||.||..|.||| |..|
BPUM_0362___g 1084 GTCCGCCGGTTAGGGGCAATGGCGGCAATTGAAATTGTGGAAGAT-CAAA 1132
BSNT_00686___ 1131 C-ACGCGTGAGCCTGATAAGGCAAAAGCAGCAGCGATCGCGGCCTATGCG 1179
| ||||||...||.||||||..||.|||.||||||||.||..|.|||| |
BPUM_0362___g 1133 CAACGCGTACACCAGATAAGAAAACAGCCGCAGCGATTGCATCATATG-G 1181
BSNT_00686___ 1180 AATC-AAAACGGATTACTTTTGCTGACAGCGGGAATTAACGGTAATATCA 1228
||.| |..||||..|.||.||..|.||.||.||.|||||.||.|||||.|
BPUM_0362___g 1182 AAACGAGCACGGGCTGCTCTTATTAACGGCAGGGATTAATGGGAATATTA 1231
BSNT_00686___ 1229 TCCGCTTTTTGACACCGCTCGTCATCTCAGA-CAGCCTATTAAATGAAGG 1277
|.|||||.||.|||||.||.||||||.|||| .|||...||.|| |||||
BPUM_0362___g 1232 TTCGCTTCTTAACACCACTTGTCATCACAGATGAGCTGCTTCAA-GAAGG 1280
BSNT_00686___ 1278 GCTCAGCATCTTGGAGG-CGGGCCT-----GCGAGCTTAA 1311
.||..|.|||.|.|||| | |||| ||..|||.|
BPUM_0362___g 1281 ACTAGGGATCATCGAGGAC--GCCTTCAAAGCACGCTAA- 1317
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