Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00683 and BPUM_0360

See Amino acid alignment / Visit BSNT_00683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:27
# Commandline: needle
#    -asequence dna-align/BSNT_00683___yczG.1.24716.seq
#    -bsequence dna-align/BPUM_0360___yczG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00683___yczG-BPUM_0360___yczG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00683___yczG-BPUM_0360___yczG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00683___yczG
# 2: BPUM_0360___yczG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 336
# Identity:     213/336 (63.4%)
# Similarity:   213/336 (63.4%)
# Gaps:          45/336 (13.4%)
# Score: 540.5
# 
#
#=======================================

BSNT_00683___      1 ATGAACATTCCAAACCATCCAGAAAC---AGAA-ACATTGCAG-CTGACA     45
                     |||||.|.|||||.||||||   |||   |||| ||||  .|| ||||  
BPUM_0360___y      1 ATGAATAATCCAACCCATCC---AACCCAAGAAGACAT--GAGACTGA--     43

BSNT_00683___     46 AAGGTTCT-TCATGCAC---TTAG-TGATCCGCTTCGTTTAGAGCTCGTC     90
                        .|||| |..|||||   ||.| ||||||..||||.|||||..|.|||
BPUM_0360___y     44 ---TTTCTGTTTTGCACGCATTGGCTGATCCAATTCGGTTAGAAATTGTC     90

BSNT_00683___     91 --AAGCAATTAGCTGAAGCAAAAGAAAAAACGTGCAGCACCTGTGCAGAT    138
                       ..||  |||||.|||||....||.|..||.|||.||||.|.|| ||| 
BPUM_0360___y     91 CGCTGC--TTAGCAGAAGCGGGGGAGAGGACATGCGGCACGTATG-AGA-    136

BSNT_00683___    139 GTGCAGGTTGCCAAATCGACTTTGTCGCATCATTTTAAAGTTTTGAGAGA    188
                      ||.|..||||||||||.||..|.||.|||||.||.|||||..||||.||
BPUM_0360___y    137 -TGAATATTGCCAAATCTACGCTTTCCCATCACTTCAAAGTGCTGAGGGA    185

BSNT_00683___    189 ATCGGGCATCGCTCAA-GTTCGGATAGAAGGAAAGCGCCGGTATTATTCG    237
                     ..|.|||||.| |.|| ||..|.||.||.|||||.|.|||.||.||||  
BPUM_0360___y    186 GGCAGGCATTG-TGAAGGTGAGAATTGACGGAAAACACCGCTACTATT--    232

BSNT_00683___    238 CTTCGCGCT-------GAAGACCTTGAAAAGGCATTTCCGGGCCTGCTTG    280
                     |||     |       ||||||.|.||.|..||.|||||.||.|| |.||
BPUM_0360___y    233 CTT-----TAAGAAAAGAAGACATCGAGACCGCTTTTCCTGGGCT-CATG    276

BSNT_00683___    281 -AAGCCGTGCTGAATGTAGACCAGGACCGCTGGTGA    315
                      .|.||.|.||....|||||..|.||.||.||||.|
BPUM_0360___y    277 TCATCCATTCTAGCCGTAGATAAAGAGCGGTGGTAA    312


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