Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00667 and BPUM_0354
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00667___yclK.1.24716.seq
# -bsequence dna-align/BPUM_0354.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00667___yclK-BPUM_0354.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00667___yclK-BPUM_0354.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00667___yclK
# 2: BPUM_0354
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1545
# Identity: 972/1545 (62.9%)
# Similarity: 972/1545 (62.9%)
# Gaps: 243/1545 (15.7%)
# Score: 2823.0
#
#
#=======================================
BSNT_00667___ 1 ATGAAGATTAAATATTTATATCAGCTGCTGCTTAGCCATATCAGCATTTT 50
|||||||||||||||||.||.|||||.|||.|.|| |||.| ||.
BPUM_0354 1 ATGAAGATTAAATATTTTTACCAGCTTCTGATGAG-----TCACC--TTG 43
BSNT_00667___ 51 GATTTTAGCGTTTGTCATT---ATCATT---------TCTCTGTTTTCCC 88
|.||.|.|| ||||| |||||| .|.||..|.||.|
BPUM_0354 44 GGTTATTGC-----TCATTGCCATCATTATTATCAGCACCCTCATGTCTC 88
BSNT_00667___ 89 ACTTTGTGAAAGAATTTGCCTATCAAAACAAAGTAGAGGAATTGACGTCA 138
|.|||||||||||..||||||||||.||||||||.||.|||.|||..||.
BPUM_0354 89 ATTTTGTGAAAGATATTGCCTATCAGAACAAAGTGGATGAAATGAAATCT 138
BSNT_00667___ 139 TATGCGG----------TGCAGA----TC----GCAAATGAATTCCAAGC 170
|||| || |||||| || ||.|..|| ||||
BPUM_0354 139 TATG-GGAATGAAATTTTGCAGAATTTTCAACAGCTACCGA-----AAGC 182
BSNT_00667___ 171 CGGCCAGGTGGACATGCGCAGGCTTTATCCTTATCAGGACATGTTAAGCA 220
|| ||.||.||.|.||| ||...|||.|.|.|.|||||..|....|
BPUM_0354 183 CG---AGATGAACTTCCGC---CTCCGTCCATTTGAAGACATTCTCTCGA 226
BSNT_00667___ 221 CAAG--AAAGACGCAGTTTATCATCTTTAATGAAGA-------------- 254
|||| |||..||| |||.||.|||||.|||||.|
BPUM_0354 227 CAAGACAAATTCGC--TTTTTCGTCTTTGATGAAAAAGGGAATGTACTGA 274
BSNT_00667___ 255 -GCAGCAGCCTTATTTTCTTCC---TGAAGGCTTTCATCACCCACCAAGG 300
.|||||||...|..|.|..|| |||| ||||| ||.|||.||||
BPUM_0354 275 CTCAGCAGCAAGAGATGCCGCCGCATGAA-GCTTT----ACTCACAAAGG 319
BSNT_00667___ 301 GAACAGCTGAAGAAATCAGAATGGAATAAGCTAAAAAAAGG-GCAGAC-- 347
||..| ||||.||||||...|||||| |.||||
BPUM_0354 320 --------------ATTTG--TGGACTAAGCTCGCAAAAGGAGAAGACAT 353
BSNT_00667___ 348 ---TGTCATGATCAGGGCAGATG------GCCGTTTTGATGATGAAGTGT 388
||||| ||.|.|| || ||||..|||||.|.||||..|
BPUM_0354 354 CATTGTCA-----AGCGGAG-TGATTCACGCCGACTTGATCAAGAAGCAT 397
BSNT_00667___ 389 CACTTGTGGCGCAGCCTATATTTGTTCAGAACG---AATTTAAAGGCGCC 435
|.||||||||.|..|||.|..|.| ||.||| |..|.||.||||..
BPUM_0354 398 CCCTTGTGGCACTTCCTGTCATAG---AGGACGGAAAGCTGAAGGGCGGG 444
BSNT_00667___ 436 GTTCTGCTGATTTCTCC--------GATCAGCGG----TGTTGAACAGAT 473
|||.||||.|||.|||| ||.|||.|| ..|||..||.||
BPUM_0354 445 GTTGTGCTCATTGCTCCTATTCAAGGAGCAGAGGAACTAATTGCTCAAAT 494
BSNT_00667___ 474 GGTCAATCAGGTCAACCTCTATAT----GTTTTACGCTGTGATCAGCACG 519
| |||| ||| |..|.||||| ||.|| |||| |||
BPUM_0354 495 G---AATC-GGT--ATTTATATATCATCGTGTT----TGTG----GCA-- 528
BSNT_00667___ 520 CTTG-TGATTAC---GATTCTCGTGAG-CTGGCTTCTGTCCAAATTCCAT 564
||| .|||||| .|||||| || || |.|||||||.||.||.|||
BPUM_0354 529 -TTGACGATTACTTTTATTCTC---AGTCT-GTTTCTGTCGAAGTTTCAT 573
BSNT_00667___ 565 GTCAAGCGGATTCAAAAGCTGAGAGAAGCGACAGATAAAGTGGCTTCCGG 614
||.||.||.|||.||||.||||||||.||.||.||.|||.|.||....||
BPUM_0354 574 GTGAATCGTATTAAAAAACTGAGAGAGGCAACTGAGAAAATTGCGCATGG 623
BSNT_00667___ 615 CGATTATGACATCCATTTGGAAAACAGCTACGGAGACGAAATCGGCGTTC 664
.||.||..||||||||.|.|||||||...||...||.|||||.|||...|
BPUM_0354 624 TGACTACAACATCCATCTTGAAAACAAACACCTTGATGAAATTGGCACAC 673
BSNT_00667___ 665 TGGCGT-CTGACTTTAATATCATGGCGAAAAAACTAAAGCAGTCAAGGGA 713
|.| || ..||.||||||||.||||||||....||..|.|.|||||||||
BPUM_0354 674 TAG-GTGAGGATTTTAATATGATGGCGAATCGTCTTCAACGGTCAAGGGA 722
BSNT_00667___ 714 TGAAATCGAGCGCCTTGAGAAGCGGAGAAGGCAGTTTATTGCTGATGTGT 763
.|||||.||.||.||.||.||.||||||.|.||.|||||.||.|||||||
BPUM_0354 723 GGAAATTGACCGGCTCGAAAAACGGAGACGACAATTTATCGCAGATGTGT 772
BSNT_00667___ 764 CACATGAATTAAAAACACCGCTGACGACGA-TCAACGGTTTGGTTGAAGG 812
|.||.|||||.|||||||||||||||||.| ||.| ||.|||||.|||.|
BPUM_0354 773 CTCACGAATTGAAAACACCGCTGACGACCATTCGA-GGATTGGTCGAATG 821
BSNT_00667___ 813 GTTGAACAGCCATACGATTCCTGAGGAT-------------AAAAAGGAT 849
|.|||| |.|||.|||| |.||| ||.
BPUM_0354 822 GCTGAA------------TACTGCGGATGTGCCGGCAGAAGAGAAA-GAG 858
BSNT_00667___ 850 AAATGCTTCTCGCTGATCAGTGAGGAAACGAAGCGCATGCTGCGGCTCGT 899
|||||||...||||.||||.|||.||.||.||.||.||||||||.|||||
BPUM_0354 859 AAATGCTATGCGCTCATCACTGATGAGACAAAACGAATGCTGCGTCTCGT 908
BSNT_00667___ 900 AAAAGAAAATCTGGATTATGAAAAAATCAGATCCCAGCAAATTA-CCTTG 948
.||.||||||.||||||||||.||||||||.||..|.|||||.| ||||.
BPUM_0354 909 CAATGAAAATATGGATTATGAGAAAATCAGGTCGAATCAAATCACCCTTC 958
BSNT_00667___ 949 AACAA----GCTAGACGTTCCTCTGATCGAGGTGTTTGAAATCGTGAAAG 994
||.|| .||| |||.||.||.||...|||||||.|..|.||.|
BPUM_0354 959 AAAAATTTCACTA-----TCCACTCATTGATACGTTTGAAGTGATCAAGG 1003
BSNT_00667___ 995 AGCACTTGCAGCAGCA-GGCGGAAGAAAAACAAAACAAGCTGATGATACA 1043
||||..||.|.| |.| |||.|||||.|||.|.||..||||.||
BPUM_0354 1004 AGCAACTGAATC-GTATGGCTGAAGAGAAAAACAATCAGCTCAT------ 1046
BSNT_00667___ 1044 AGTAGAGG---ATC---ACGTCATCGTACATGCCGATTATGACCGGTTCA 1087
.||||||| ||| ||...|..|||.|.||.||||||||.|||.|||
BPUM_0354 1047 TGTAGAGGTGAATCCTGACCAAAAGGTATACGCAGATTATGATCGGCTCA 1096
BSNT_00667___ 1088 TTCAAATTCTCGTCAACATTACGAAAAACAGC-ATCCAATTTACGCAAAA 1136
|||||||.|||||||||||.||.||.||| || ||.||.|||||..||..
BPUM_0354 1097 TTCAAATCCTCGTCAACATCACAAAGAAC-GCTATTCAGTTTACAGAAGG 1145
BSNT_00667___ 1137 CGGTGACATTTGGCTGCGCGGAATGGAAGGTTATAAAGAGACGATTATTG 1186
|||...||||..|.||.|.||.|..||||...||...||.|||||.||||
BPUM_0354 1146 CGGCCGCATTGTGTTGAGAGGGAAAGAAGAGGATGGGGAAACGATCATTG 1195
BSNT_00667___ 1187 AAATTGAAGACACGGGTATCGGCATTCCAAAAGAGGATATTGAGCATATT 1236
||.|.||||||||.||..|.||.|||.||..|||.||..|..|.||.|||
BPUM_0354 1196 AAGTAGAAGACACAGGAGTAGGTATTGCACCAGAAGAAGTCAAACACATT 1245
BSNT_00667___ 1237 TGGGAGCGATTCTATAAAGCAGATATTTCAAGAACGAACACAGCATACGG 1286
|||||.||.||.||||||||.||||||||.|||||||..|||.|.||.||
BPUM_0354 1246 TGGGAACGTTTTTATAAAGCGGATATTTCGAGAACGACTACACCGTATGG 1295
BSNT_00667___ 1287 TGAATACGGACTCGGTCTCTCGATCGTCAGGCAGCTCGTTGAAATGCACC 1336
.|||||.|||||.||..|.||.|||||||.|||||||||.||..||||..
BPUM_0354 1296 AGAATATGGACTTGGCTTGTCCATCGTCAAGCAGCTCGTGGATTTGCATG 1345
BSNT_00667___ 1337 AGGGCACAG-TAGAAATCAAGAGTGA-----AGAAGGGAAAGGCACAAAG 1380
|.|| |||| |.||..|.||.||||| |.|||||||.|.||
BPUM_0354 1346 AAGG-ACAGATTGATTTGAAAAGTGAGAAATATAAGGGAACGACA----- 1389
BSNT_00667___ 1381 TTCATCATCCGCCTTCCTTTAACGGCAAAACAGCAATAG------ 1419
||.|..| |||.||||.||.....|||.|||.||
BPUM_0354 1390 TTTACGA------TTCGTTTACCGCTGTCACAACAAAAGGGCTAA 1428
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