Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00666 and BPUM_0353
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00666.1.24716.seq
# -bsequence dna-align/BPUM_0353.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00666-BPUM_0353.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00666-BPUM_0353.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00666
# 2: BPUM_0353
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 904
# Identity: 499/904 (55.2%)
# Similarity: 499/904 (55.2%)
# Gaps: 254/904 (28.1%)
# Score: 1676.5
#
#
#=======================================
BSNT_00666 1 ATGGATAAGACCGCCTCTGGGGCGCGTCCCCTTGCTGATAAATTAATTGT 50
BPUM_0353 0 -------------------------------------------------- 0
BSNT_00666 51 AGTCCAAAGGTATGAAAAAAATATGAATAATCTATTTCTAGTTGATGAAA 100
BPUM_0353 0 -------------------------------------------------- 0
BSNT_00666 101 TAAAAACTAACAATTGTGAAACGCAAAACCTTCTGTTTAAAATGGTGCTA 150
BPUM_0353 0 -------------------------------------------------- 0
BSNT_00666 151 TTATATAAAAAAGCATCAAAACAACCGGAGGATATAATGAAAATATTAAT 200
|||||.||||||||
BPUM_0353 1 ------------------------------------ATGAAGATATTAAT 14
BSNT_00666 201 GATAGAAGATAATGTTAGTGTATGTACGATGACGGAGATGTTCTTTTTTA 250
|||.|||||.|||...|||||.|||||.|||||.||.|||| |||||.|
BPUM_0353 15 GATTGAAGACAATCAGAGTGTGTGTACAATGACCGAAATGT--TTTTTCA 62
BSNT_00666 251 A--AGAAGGTTTTGAAGCGGAATTCGTTCATGACGGGTTAGAAGGGTACC 298
| ||||||.|||.|.|||||||||||||||||.||...|||.||.|...
BPUM_0353 63 AAGAGAAGGGTTTCAGGCGGAATTCGTTCATGATGGTCAAGACGGCTTAA 112
BSNT_00666 299 AGCGTTTTACG---GAAGAAAATTGGGATCTGATCATTTTGGATATCATG 345
|.||.||||.| |||||..|||||||||||.|.||.||.|||||||||
BPUM_0353 113 ATCGGTTTAAGCAAGAAGATGATTGGGATCTGCTGATATTAGATATCATG 162
BSNT_00666 346 CTTCCATCTATGGACGGCGTGACCATCTG-CAGAA--------AAATAAG 386
|||||.||.|||||.||..|.|||||||| ||.|| |.||.||
BPUM_0353 163 CTTCCTTCAATGGATGGTCTAACCATCTGTCAAAAGGTGCGTCAGATCAG 212
BSNT_00666 387 AGAGACAAGCACGGTGCCGATTATCATGCTGACTGCCAAAGACACTGAAT 436
.|| .||.|||||.||.||||||||.||.|||||.||.||.|
BPUM_0353 213 TGA---------TGTTCCGATCATTATGCTGACAGCAAAAGAGACGGAGT 253
BSNT_00666 437 CAGATCAGGTCATCGGCTTTGAGATGGGGGCGGACGATTATGTCACAAAG 486
|.||||||||..|.||.|||||..|.|||||.||.||||||||.||.|||
BPUM_0353 254 CTGATCAGGTGCTTGGTTTTGATCTAGGGGCAGATGATTATGTGACCAAG 303
BSNT_00666 487 CCGTTCAGTCCGCTGACATTGGTTGCCCGCATCAAAGCCGTCATCAGAAG 536
||.||.||.||.|||||.||..|.||..|.||||||||.|| |||
BPUM_0353 304 CCTTTTAGCCCCCTGACCTTAATGGCAAGAATCAAAGCGGT-----GAA- 347
BSNT_00666 537 ATACAAGGCGA--CAGGCAA--AGCGGTTATTGATGAAGA------TATG 576
|.|.||| ||.|||| |.||.||....|.||||| |.||
BPUM_0353 348 ----ACGCCGATTCACGCAAACAACGATTCAAAAAGAAGACGAACGTCTG 393
BSNT_00666 577 ATCGAAACGGAATGCTTTACC--ATCAATAAGAAGACGAGAGAAGTATTA 624
|.|||.|.| |.||.|| .|..||||.||.||.|||||.||.||.
BPUM_0353 394 ---GCAACAGCA--CATTTCCTGTTAGATAAAAAAACAAGAGAGGTTTTT 438
BSNT_00666 625 TTAAACGGAGAGCCTGTAGAAAATCTCACGCCGAAGGA-----ATTCGAT 669
.||.|.||.|||||..|.||.|||||.||||||||||| |||.|.|
BPUM_0353 439 CTAGATGGTGAGCCAATTGAGAATCTGACGCCGAAGGAATATGATTTGCT 488
BSNT_00666 670 CTGCTTTATTACCTTGTCCAAAATCCGCGGCAGGTGTTCTCCAGAGAACA 719
.||||||.||| |.||..|.||.||.||.||.||.||..|.||.||
BPUM_0353 489 GTGCTTTTTTA-----TTCAGCACCCTCGACAAGTATTTTCGCGCGAGCA 533
BSNT_00666 720 GCTGCTTGAGCAGGTATGGGGCTATCAATTTTACGGAGATGAGCGAACGG 769
..||||.|||||..|.|||||.|||||||||||.||||||||.|||||||
BPUM_0353 534 ATTGCTGGAGCAAATTTGGGGATATCAATTTTATGGAGATGAACGAACGG 583
BSNT_00666 770 TTGACGTTCATATCAAACGGCTGCGGAAAAAGCTTGCCAGCGA-GGAC-- 816
|.||.||||||||.|||||||||||..||||..| |.|.|| ||||
BPUM_0353 584 TCGATGTTCATATTAAACGGCTGCGCCAAAAAAT---CGGAGACGGACCT 630
BSNT_00666 817 AAGCCTTTCCTGTATACTGTGTGGGGAGTAGGGTATAAATTTGATGAAGA 866
|||||.||.||||||||.||.|||||.|||||||||||.||.||||||||
BPUM_0353 631 AAGCCCTTTCTGTATACGGTATGGGGCGTAGGGTATAAGTTCGATGAAGA 680
BSNT_00666 867 TTAA 870
||||
BPUM_0353 681 TTAA 684
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