Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06057 and BPUM_0350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06057___yxeP.1.24716.seq
# -bsequence dna-align/BPUM_0350___yxeP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06057___yxeP-BPUM_0350___yxeP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06057___yxeP-BPUM_0350___yxeP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06057___yxeP
# 2: BPUM_0350___yxeP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 817/1232 (66.3%)
# Similarity: 817/1232 (66.3%)
# Gaps: 163/1232 (13.2%)
# Score: 2605.0
#
#
#=======================================
BSNT_06057___ 1 ----------------ATGGCCGACAAAGCGTTTCATACCCGTTTAATCA 34
||| ||||.||..|.|..||||||||.|
BPUM_0350___y 1 GTGAAATCAATAGGAAATG-------AAGCATTAAACAAACGTTTAATTA 43
BSNT_06057___ 35 ATATGCGGCGTGATCTTCATGAACATCCTGAGCTGTCATTTCAAGAGAT- 83
|.||.||.||.|..||||||||.|||||.||||||.|||||.|||| ||
BPUM_0350___y 44 ACATTCGCCGAGCGCTTCATGAGCATCCAGAGCTGGCATTTGAAGA-ATA 92
BSNT_06057___ 84 TGAAACGACGAAAAAAATCCGCCGCTGGCTTGAGGAGGAGCAAATCGAAA 133
|||||||||.||||||.|.|||.|||||.|.||.||||||...|||....
BPUM_0350___y 93 TGAAACGACTAAAAAACTGCGCAGCTGGTTAGAAGAGGAGGGGATCACCG 142
BSNT_06057___ 134 TACTTGATGTTCC------TCAATTGGAGACTGGCG-TGATTGCAGAAAT 176
||||.|||.|||| |||| ||.||.| ||..|| .|||||
BPUM_0350___y 143 TACTCGATTTTCCAGCTCTTCAA------ACAGGTGTTGTCTG-TGAAAT 185
BSNT_06057___ 177 CAAAGGACGGGAAGACGGCCCCGTGATAGCAATACGAGCGGATATTGACG 226
|||||||....||||.||.||...|||.|...|..|.||.||||||||.|
BPUM_0350___y 186 CAAAGGAGAACAAGAGGGACCAACGATTGTCCTGAGGGCTGATATTGATG 235
BSNT_06057___ 227 CGCTCCCGATCCAAGAA----CAGACGAATCTTCCATTTGCATCTAAGGT 272
|.||.|||||..||||| |.|.|||| ||||||.|.||.|||||
BPUM_0350___y 236 CACTTCCGATTGAAGAAGCATCTGGCGAA----CCATTTTCCTCAAAGGT 281
BSNT_06057___ 273 TGATGGCACAATGCATGCGTGCGGACACGATTTTCATACTGCTTCTATTA 322
....||.|.|||||||||.|||||.||.|||||.|||||.||||||||..
BPUM_0350___y 282 ACCGGGGAAAATGCATGCTTGCGGTCATGATTTCCATACAGCTTCTATCT 331
BSNT_06057___ 323 TTGGCACAGCGA---TTTTGCTGAATCAAAGAAGGG----CCGAGCTGAA 365
|||| ||||| |||| |.|.||||||.|| .||||.|.||
BPUM_0350___y 332 TTGG---AGCGACTCTTTT----ATTAAAAGAACGGAAACACGAGATCAA 374
BSNT_06057___ 366 AGGTACAGTCCGCTTTATTTTTCAGCCAGCCGAAGAAATTGCCGC-AGGA 414
|||.||.|||||..||.|.||||||||.||.||.|||.|.| ||| ||||
BPUM_0350___y 375 AGGAACGGTCCGTATTTTGTTTCAGCCGGCTGAGGAAGTCG-CGCAAGGA 423
BSNT_06057___ 415 GCAAGAAAGGTCATAGAAGCTGGCGTACTTGATGGCGTTTCCGCGATTTT 464
||||.|.|.||||||||.||.|||||..|.|||||.||....||.|||||
BPUM_0350___y 424 GCAAAACATGTCATAGAGGCAGGCGTTTTAGATGGAGTGGATGCCATTTT 473
BSNT_06057___ 465 CGGCATGCACAATAAGCCGGATCTGCCTGTCGGAACCATTGGTGT----- 509
.||.||||||||.||.||..|.|||||.||.||.||.||.||.||
BPUM_0350___y 474 TGGTATGCACAACAAACCTAACCTGCCAGTTGGCACTATAGGCGTTAGAG 523
BSNT_06057___ 510 AAAGGAAGGTCCGCTT--ATGGCAAGTGTTGACCGGTTTGAGATCGTCAT 557
||| || |||| |||||.|||||.|||||||||||.||||..||
BPUM_0350___y 524 AAA--AA-----GCTTTAATGGCGAGTGTAGACCGGTTTGAAATCGATAT 566
BSNT_06057___ 558 CAAAGGGAAAGGCGGACACGCCGGCATCCCGAATAACA--GTATTGATCC 605
.|||||.|..||.||.||.||.||.||.||||||.||| ||| |||||
BPUM_0350___y 567 TAAAGGAACGGGTGGTCATGCAGGTATTCCGAATCACACGGTA--GATCC 614
BSNT_06057___ 606 AATCGCTGCAGCCGGACAAATCATCAGCGGGC----------TGC----- 640
.||.|| ||||||||||| |||
BPUM_0350___y 615 CATTGC---------------CATCAGCGGGCAGATCACAAGTGCTCTTC 649
BSNT_06057___ 641 ----AATCTGTGGTCAGCC-GCAATATCAGCTCACTGCAAAACGCAGTCG 685
|||| ||||||| ||.| |||||||||.||||..|.|||||||
BPUM_0350___y 650 AACAAATC----GTCAGCCGGCGA-ATCAGCTCATTGCATCATGCAGTCG 694
BSNT_06057___ 686 TCAGTATCACAAG-AGTACAGGCGGGCACCTCGTGGAACGTAATTCCAGA 734
|||||||||||.| |.|..|||| ||.||.||.|||||.||.|||||.||
BPUM_0350___y 695 TCAGTATCACACGTATTCAAGGC-GGTACATCATGGAATGTGATTCCTGA 743
BSNT_06057___ 735 CCAAGCTGAAATGGAGGGGACGGTTCGAACCTTTCAAAAAGAAGCGAGGC 784
.|..|.|||.|||||.||.||.|||||.||.|||.|....||||.|||
BPUM_0350___y 744 TCGTGTTGAGATGGAAGGAACCGTTCGGACATTTGAGCCTGAAGTGAG-- 791
BSNT_06057___ 785 AG-GCTG-TTCCCGAGCATATGAGACGAGTGGCTGA-AGGAATTGCAGCG 831
|| |.|| ||||.||||..||||..|.|.|.| ||| .||.|||||.|..
BPUM_0350___y 792 AGCGATGATTCCAGAGCTCATGAAGCAAATCG-TGAGGGGGATTGCCGAA 840
BSNT_06057___ 832 GGCTATGGGGCACAAGCAGAATTCAAGTGGTTTCCTTATTTGCCTTCCGT 881
||.|.|||||||.|||..|||.|.||.|||..|||.|||||||||||.||
BPUM_0350___y 841 GGATTTGGGGCAAAAGGCGAAGTGAAATGGCATCCGTATTTGCCTTCTGT 890
BSNT_06057___ 882 TCAGAATGACGGCACATTTTTGAATGCGGCATCCGAAGCTG--------- 922
.|..||||||| ||..||.|| |.|||.||
BPUM_0350___y 891 GCTAAATGACG----ATCGTTTAA---------CAAAGGTGGTCAAAGAA 927
BSNT_06057___ 923 -CGGCACG---GCTTGGCTATCA-AACCGTTCACGCTGAGCAGTCTCCGG 967
|||||.| || |||.|.||| |..||||||.||.||||||||.||||
BPUM_0350___y 928 ACGGCAAGCGCGC-TGGATCTCACAGTCGTTCAGGCAGAGCAGTCACCGG 976
BSNT_06057___ 968 GCGGAGAAGACTTCGCTCTGTATCAAGAGAAGATTCCGGGATTTTTTGTC 1017
||||||||||.||.||.||.||||||||..|.|||||.||.|||||.||.
BPUM_0350___y 977 GCGGAGAAGATTTTGCCCTTTATCAAGAACACATTCCAGGCTTTTTCGTA 1026
BSNT_06057___ 1018 TGGATGGGAACGAACGGGACGGAGGAGTGGCATCATCCGGCCTTTACACT 1067
||||||||.||||.|||.||.|||||.|||||||||||.|||||||||||
BPUM_0350___y 1027 TGGATGGGGACGAGCGGTACCGAGGAATGGCATCATCCCGCCTTTACACT 1076
BSNT_06057___ 1068 GGATGAAGATGCCCTTACGGTTGCCTCTCAATACTTTGCGGAGCTGGCGG 1117
|.||||||..||.||..|.||||||.||...|..|||||.|||||.||.|
BPUM_0350___y 1077 GAATGAAGGCGCACTCCCTGTTGCCGCTGCCTTTTTTGCCGAGCTTGCTG 1126
BSNT_06057___ 1118 TTATTGTATTGGAG--ACCATCA---AATGA- 1143
||...|.||||||| ||.|||| |||.|
BPUM_0350___y 1127 TTCGGGCATTGGAGTCACGATCATGGAATTAA 1158
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