Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06059 and BPUM_0348
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_06059___yxeN.1.24716.seq
# -bsequence dna-align/BPUM_0348___yxeN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06059___yxeN-BPUM_0348___yxeN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06059___yxeN-BPUM_0348___yxeN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06059___yxeN
# 2: BPUM_0348___yxeN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 490/690 (71.0%)
# Similarity: 490/690 (71.0%)
# Gaps: 30/690 ( 4.3%)
# Score: 1622.0
#
#
#=======================================
BSNT_06059___ 1 ATGAACACGATTGATTGGGAATTCATGATATCAGCGTTCCCGACTTTAAT 50
|||||||..|||||||||.|.|..|||.|..|.|..||.|||||.||.||
BPUM_0348___y 1 ATGAACAAAATTGATTGGCAGTATATGGTGACGGTTTTTCCGACATTGAT 50
BSNT_06059___ 51 TCAGGCCCTTCCGATCACCTTGTTTATGGCAATAGCAGCTATGATTTTTG 100
|||...|.|.|||||.||..|.||.|||||.||.|...|.|||.|.||||
BPUM_0348___y 51 TCAATACTTGCCGATAACGATCTTCATGGCGATTGTCTCCATGGTATTTG 100
BSNT_06059___ 101 CCATTATCGGAGGACT--TATTCTCGCACTCATTACAAAAAACAAAATTC 148
||||||||...||..| ||| ||||.||.|||||.||||||...||.|
BPUM_0348___y 101 CCATTATCATTGGTGTGGTAT--TCGCTCTTATTACGAAAAACCGGATAC 148
BSNT_06059___ 149 CAGTGCTTCAT--CAGCTGTCAAAGCTGTATATATCCTTTTTCCGAGGCG 196
| ||.||.|| ||..|..|.|||||||||||.||.||||||.|||..|
BPUM_0348___y 149 C--TGTTTTATACCAATTTGCCAAGCTGTATATTTCTTTTTTCAGAGCGG 196
BSNT_06059___ 197 TGCCGACACTT-GTACAGCTGTTCTTAATCTATTACGGGCTGCCGCAGCT 245
|.||.|| ||| ||.|||||.||..|.||.||||..||.||.|||||.||
BPUM_0348___y 197 TTCCAAC-CTTGGTTCAGCTCTTTCTCATTTATTTTGGTCTTCCGCAACT 245
BSNT_06059___ 246 ATTTCCAGAGATGAGCAAAATGACAGCTCTCACAGCTGCCATCATTGGGT 295
|||.||.|.|||||....||||...||.||.|||||.|.|||.||.||.|
BPUM_0348___y 246 ATTCCCTGCGATGACTTCAATGGATGCCCTAACAGCGGTCATTATCGGAT 295
BSNT_06059___ 296 TAAGCTTAAAAAACGCAGCTTATTTGGCAGAAATCTTCCGGGCCGCCCTC 345
||||..|.||||||.||||.||.||.||||||||.|||.|.||.||||||
BPUM_0348___y 296 TAAGTATTAAAAACTCAGCATACTTAGCAGAAATTTTCAGAGCGGCCCTC 345
BSNT_06059___ 346 AATTCTGTTGATGACGGGCAGCTGGAGGCGTGCCTGTCTGTCGGTATGAC 395
||.|||||.|||||.||||||||.||.||.||.||.||||||||.|||||
BPUM_0348___y 346 AACTCTGTAGATGAAGGGCAGCTAGAAGCTTGTCTATCTGTCGGCATGAC 395
BSNT_06059___ 396 AAAATTTCAGGCA----TA---CAGACGGATTATTTTGCCGCAAGCGATC 438
||.|| |||| || |||| ||||||||.|||||.||.||.
BPUM_0348___y 396 AAGAT----GGCAATCTTACGTCAGA---ATTATTTTCCCGCAGGCAATT 438
BSNT_06059___ 439 CGAAATGCGATTCCGGCAACGGGCAATACATTTATCGGGCTCCTGAAAGA 488
.|||||||||||||.||.|||||.|||||.||||||||.||..|.|||||
BPUM_0348___y 439 AGAAATGCGATTCCAGCGACGGGTAATACCTTTATCGGTCTTTTAAAAGA 488
BSNT_06059___ 489 AACGTCACTGGCCTTTAC-ATTAGGGGT--CATGGAGATGTTCGCCCAAG 535
|||.||.||.|||||||| ||| ||.|| || ||.|||||.||.||||
BPUM_0348___y 489 AACATCTCTTGCCTTTACGATT-GGTGTGGCA--GAAATGTTTGCACAAG 535
BSNT_06059___ 536 GGAAGATGTACGCTTCAGGAAACCTCAAATATTTTGAGACGTACTTGGCG 585
||||||||...||.||||..|||...|||||.|||||.||.||.||.||.
BPUM_0348___y 536 GGAAGATGATTGCGTCAGCGAACTATAAATACTTTGAAACCTATTTAGCT 585
BSNT_06059___ 586 GTTGCGATCGTCTATTGGATTCTTACCATGATCTACAGCATGTTGCAGGA 635
||.|.|||.||.||||||.|..|.|||||.||.||.|||.|..|.||.||
BPUM_0348___y 586 GTAGGGATTGTGTATTGGGTGATGACCATCATTTATAGCTTCCTTCAAGA 635
BSNT_06059___ 636 CTTGTTTGAACGTGCCATGAGCAAGCCATACCGGACTTAG 675
|.|.||||||||....||.|||||.||.|||||||.|||.
BPUM_0348___y 636 CCTATTTGAACGAAAAATCAGCAAACCTTACCGGAATTAA 675
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