Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06059 and BPUM_0348

See Amino acid alignment / Visit BSNT_06059 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:36
# Commandline: needle
#    -asequence dna-align/BSNT_06059___yxeN.1.24716.seq
#    -bsequence dna-align/BPUM_0348___yxeN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06059___yxeN-BPUM_0348___yxeN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06059___yxeN-BPUM_0348___yxeN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06059___yxeN
# 2: BPUM_0348___yxeN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity:     490/690 (71.0%)
# Similarity:   490/690 (71.0%)
# Gaps:          30/690 ( 4.3%)
# Score: 1622.0
# 
#
#=======================================

BSNT_06059___      1 ATGAACACGATTGATTGGGAATTCATGATATCAGCGTTCCCGACTTTAAT     50
                     |||||||..|||||||||.|.|..|||.|..|.|..||.|||||.||.||
BPUM_0348___y      1 ATGAACAAAATTGATTGGCAGTATATGGTGACGGTTTTTCCGACATTGAT     50

BSNT_06059___     51 TCAGGCCCTTCCGATCACCTTGTTTATGGCAATAGCAGCTATGATTTTTG    100
                     |||...|.|.|||||.||..|.||.|||||.||.|...|.|||.|.||||
BPUM_0348___y     51 TCAATACTTGCCGATAACGATCTTCATGGCGATTGTCTCCATGGTATTTG    100

BSNT_06059___    101 CCATTATCGGAGGACT--TATTCTCGCACTCATTACAAAAAACAAAATTC    148
                     ||||||||...||..|  |||  ||||.||.|||||.||||||...||.|
BPUM_0348___y    101 CCATTATCATTGGTGTGGTAT--TCGCTCTTATTACGAAAAACCGGATAC    148

BSNT_06059___    149 CAGTGCTTCAT--CAGCTGTCAAAGCTGTATATATCCTTTTTCCGAGGCG    196
                     |  ||.||.||  ||..|..|.|||||||||||.||.||||||.|||..|
BPUM_0348___y    149 C--TGTTTTATACCAATTTGCCAAGCTGTATATTTCTTTTTTCAGAGCGG    196

BSNT_06059___    197 TGCCGACACTT-GTACAGCTGTTCTTAATCTATTACGGGCTGCCGCAGCT    245
                     |.||.|| ||| ||.|||||.||..|.||.||||..||.||.|||||.||
BPUM_0348___y    197 TTCCAAC-CTTGGTTCAGCTCTTTCTCATTTATTTTGGTCTTCCGCAACT    245

BSNT_06059___    246 ATTTCCAGAGATGAGCAAAATGACAGCTCTCACAGCTGCCATCATTGGGT    295
                     |||.||.|.|||||....||||...||.||.|||||.|.|||.||.||.|
BPUM_0348___y    246 ATTCCCTGCGATGACTTCAATGGATGCCCTAACAGCGGTCATTATCGGAT    295

BSNT_06059___    296 TAAGCTTAAAAAACGCAGCTTATTTGGCAGAAATCTTCCGGGCCGCCCTC    345
                     ||||..|.||||||.||||.||.||.||||||||.|||.|.||.||||||
BPUM_0348___y    296 TAAGTATTAAAAACTCAGCATACTTAGCAGAAATTTTCAGAGCGGCCCTC    345

BSNT_06059___    346 AATTCTGTTGATGACGGGCAGCTGGAGGCGTGCCTGTCTGTCGGTATGAC    395
                     ||.|||||.|||||.||||||||.||.||.||.||.||||||||.|||||
BPUM_0348___y    346 AACTCTGTAGATGAAGGGCAGCTAGAAGCTTGTCTATCTGTCGGCATGAC    395

BSNT_06059___    396 AAAATTTCAGGCA----TA---CAGACGGATTATTTTGCCGCAAGCGATC    438
                     ||.||    ||||    ||   ||||   ||||||||.|||||.||.||.
BPUM_0348___y    396 AAGAT----GGCAATCTTACGTCAGA---ATTATTTTCCCGCAGGCAATT    438

BSNT_06059___    439 CGAAATGCGATTCCGGCAACGGGCAATACATTTATCGGGCTCCTGAAAGA    488
                     .|||||||||||||.||.|||||.|||||.||||||||.||..|.|||||
BPUM_0348___y    439 AGAAATGCGATTCCAGCGACGGGTAATACCTTTATCGGTCTTTTAAAAGA    488

BSNT_06059___    489 AACGTCACTGGCCTTTAC-ATTAGGGGT--CATGGAGATGTTCGCCCAAG    535
                     |||.||.||.|||||||| ||| ||.||  ||  ||.|||||.||.||||
BPUM_0348___y    489 AACATCTCTTGCCTTTACGATT-GGTGTGGCA--GAAATGTTTGCACAAG    535

BSNT_06059___    536 GGAAGATGTACGCTTCAGGAAACCTCAAATATTTTGAGACGTACTTGGCG    585
                     ||||||||...||.||||..|||...|||||.|||||.||.||.||.||.
BPUM_0348___y    536 GGAAGATGATTGCGTCAGCGAACTATAAATACTTTGAAACCTATTTAGCT    585

BSNT_06059___    586 GTTGCGATCGTCTATTGGATTCTTACCATGATCTACAGCATGTTGCAGGA    635
                     ||.|.|||.||.||||||.|..|.|||||.||.||.|||.|..|.||.||
BPUM_0348___y    586 GTAGGGATTGTGTATTGGGTGATGACCATCATTTATAGCTTCCTTCAAGA    635

BSNT_06059___    636 CTTGTTTGAACGTGCCATGAGCAAGCCATACCGGACTTAG    675
                     |.|.||||||||....||.|||||.||.|||||||.|||.
BPUM_0348___y    636 CCTATTTGAACGAAAAATCAGCAAACCTTACCGGAATTAA    675


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.