Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00655 and BPUM_0343
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:26
# Commandline: needle
# -asequence dna-align/BSNT_00655___yclF.1.24716.seq
# -bsequence dna-align/BPUM_0343.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00655___yclF-BPUM_0343.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00655___yclF-BPUM_0343.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00655___yclF
# 2: BPUM_0343
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity: 1046/1553 (67.4%)
# Similarity: 1046/1553 (67.4%)
# Gaps: 133/1553 ( 8.6%)
# Score: 3231.0
#
#
#=======================================
BSNT_00655___ 1 ATGGCTTCGATTGATAACGAAAGTATCATTAAAAGCGTCCCGCAAAAAGG 50
|||.||.|.|||||..||||.|..||..|||||||.||.||.||||||||
BPUM_0343 1 ATGTCTACAATTGACCACGATAAAATTGTTAAAAGTGTTCCTCAAAAAGG 50
BSNT_00655___ 51 GTTCTTTGGTCACCCGCGAGGACTATTTACACTATTTTTCACCGAATTTT 100
|||.|||||.||.||...||||||.|..|||||.||.|||||.|||||||
BPUM_0343 51 GTTTTTTGGACATCCTAAAGGACTTTACACACTGTTCTTCACTGAATTTT 100
BSNT_00655___ 101 GGGAGCGTTTCTCTTACTATGGAATGAGAGCAAT-CTTACTTTACTATTT 149
|||||||||||||.||.|||||.|||.|.|||.| |||| ||||.|||.|
BPUM_0343 101 GGGAGCGTTTCTCCTATTATGGCATGCGTGCACTGCTTA-TTTATTATAT 149
BSNT_00655___ 150 GTATACAGAGACGGTAAACGGAGGGCTCGGCTTTGA-CAAGGGCACTGCG 198
|||.||||||..|..|||.||.||.||.||.||||| |||..| ||.||.
BPUM_0343 150 GTACACAGAGGTGACAAAAGGCGGTCTTGGTTTTGATCAAACG-ACAGCC 198
BSNT_00655___ 199 GTTGCCATTATGTCGATCTACGGATCACTCGTATACATGTCCACTATTAT 248
..|.|.||.|||||..|||||||..|.||.||.||.|||||....|||||
BPUM_0343 199 AATTCGATCATGTCTGTCTACGGTGCGCTTGTCTATATGTCAGGCATTAT 248
BSNT_00655___ 249 TGGCGGATGGCTCGCTGACCGGGTATTCGGTACCGCAAACACCGTGTTTT 298
|||.|||||||||||.|||||.|||||||||.|..|.|..||.||.||||
BPUM_0343 249 TGGGGGATGGCTCGCCGACCGCGTATTCGGTTCGTCTAGTACGGTCTTTT 298
BSNT_00655___ 299 ACGGCGGCATATTCATTATGTTCGGCCA---CATTGCACTCGCCTAT-CC 344
|.|||||..|.|||||||||.|.||.|| |||| |.|.||.| ||
BPUM_0343 299 ATGGCGGGGTGTTCATTATGCTTGGACATGTCATT----TTGGCTTTACC 344
BSNT_00655___ 345 GGGCAGCGCGATCGCATTCTATATCAGCATGGCGCTTATTATTGTCGGAA 394
..||.|.||.|..||..|||.|||.||.||||..||.||||||.|.||.|
BPUM_0343 345 AAGCGGAGCAACAGCGCTCTTTATTAGTATGGGTCTAATTATTATTGGGA 394
BSNT_00655___ 395 CAGG-CTTATTAAAACCAAACGTTTCAAGCGTGGTTGGGGATCTTTACAC 443
|||| ||| .|.||.|||||||||||||.|.|.||.||.||.||.||..|
BPUM_0343 395 CAGGTCTT-CTGAAGCCAAACGTTTCAAACATTGTGGGCGACCTGTATTC 443
BSNT_00655___ 444 GAAAGAAGACCCGCGCCGCGACTCAGGTTTCAGTATTTTCTACATGGGGA 493
.|||..||||||.|||.|.||.||.||.||.||||||||.||||||||||
BPUM_0343 444 TAAAACAGACCCACGCAGGGATTCTGGCTTTAGTATTTTTTACATGGGGA 493
BSNT_00655___ 494 TTAACCTCGGTGGTTTACTTGCGCCGTTAATTATCGGAACACTCGGAC-A 542
|.|||.|.||.|||||..||||.|||||||||.|||||||||||||.| |
BPUM_0343 494 TCAACATGGGCGGTTTTATTGCCCCGTTAATTGTCGGAACACTCGGTCAA 543
BSNT_00655___ 543 GAAGTACAACTATCATCTCGGCTTCGGAGCTGCCGCGGTCGGAATGCTTC 592
.|||| .||||..||.|||||.|||..|..|||.||.||.||.||||||.
BPUM_0343 544 AAAGT-GAACTTCCACCTCGGATTCTCACTTGCTGCCGTTGGGATGCTTG 592
BSNT_00655___ 593 TCGGACTTATCGTATTTGCTTTGA-CAAGAAAGAAA---AACCTCGGGCT 638
|.||.||.||...||||| ||| ||.|||| ||| ||.||.||.||
BPUM_0343 593 TTGGTCTGATTACATTTG---TGATCACGAAA-AAACCGAATCTTGGTCT 638
BSNT_00655___ 639 TGCAGGTTCCAATGTGCCGAATCCGCTGTCTAAAAAATCTGCGATTGGCA 688
|||.|||.|..|||||.|.|||||.|| |||.||.|.|| |
BPUM_0343 639 TGCCGGTACTTATGTGACAAATCCACT---------ATCAGCTACTG--A 677
BSNT_00655___ 689 CCGGAA--------------TCGG------TGTTATCATTGTGGCGATCG 718
.||.|| |||| ..|||.|||||| |.|.|
BPUM_0343 678 ACGCAAGAACTTCAAAATTTTCGGAACATTAATTACCATTGT---GCTTG 724
BSNT_00655___ 719 CAG----TGATGATC-TCTG--TACAAACAGGCGTGCTGACGATCAATCG 761
|.| ||.|| || ||.| |.||||||||.|..||.||.||.||
BPUM_0343 725 CTGTTTTTGCTG-TCATCGGCATTCAAACAGGTGCACTCACAATTAA--- 770
BSNT_00655___ 762 TTTTATCGAC----CTTGTAAGTATTCTCGGTATTTTGATTCCTGTCATT 807
|||||..|| .||||.|||...||.|||.|..|.|||||..|..|.
BPUM_0343 771 -TTTATTCACTTGGTTTGTCAGTGCCCTTGGTGTGCTCATTCCGATTGTA 819
BSNT_00655___ 808 TATTTCATCATCATGT-TTACAAGCAAAAA---------AGCGGA-CAAA 846
|||||||||.|||||| ||.| ||.||||| ||.||| |||.
BPUM_0343 820 TATTTCATCGTCATGTATTTC-AGTAAAAAGACGAGCCCAGTGGAGCAAT 868
BSNT_00655___ 847 ACAGAAAAATCCCG-TCTTGCCGCTTACGTTCCTTTGTTTATCAGTGCTG 895
.|||| | ||| ||||||..||||.|||||..|...|||.|
BPUM_0343 869 CCAGA--------GTTCT---CGCTTATATTCCATTGTTCCTTGCTGCGG 907
BSNT_00655___ 896 TCATGTTCTGGGCCATTCAGGAACAGGGAGCGACCATTCTTGCGGTATAC 945
|.|||||||||||.|||||.|||||.||..|.|.||||.|.||...|||.
BPUM_0343 908 TGATGTTCTGGGCGATTCAAGAACAAGGCTCAAACATTTTAGCCACATAT 957
BSNT_00655___ 946 GCTGATGAACGCATAAA----ACTTTCATTGGGCGGATTCGA-ACTTCAG 990
||.|||.||||.|.||| |.||||.||| |||| || ||||...
BPUM_0343 958 GCAGATCAACGAACAAACTTGAATTTCCTTG---GGAT--GACACTTGCC 1002
BSNT_00655___ 991 TCATCTTGGTTCCAATCATTAAATCCATTGTTTGTCGTCATTTTTGCGCC 1040
||.||.||||||||||||||.||.|||.|.|||.|.||..|.||..|.||
BPUM_0343 1003 TCTTCGTGGTTCCAATCATTGAACCCAATCTTTATTGTGCTATTGTCTCC 1052
BSNT_00655___ 1041 AATATTCGCATGGCTCTGGATGAAGCTTGGCAAACGCCAGCCGTCTACAC 1090
..|.||.||.|||.|.|||||.|..|||||.||....|||||||||||.|
BPUM_0343 1053 TGTGTTTGCTTGGTTGTGGATTAGACTTGGAAAGAAACAGCCGTCTACCC 1102
BSNT_00655___ 1091 CAGTTAAATTCTCAATCGGAATTATTTTAGCCGGATTGTCATTTATCATT 1140
|..||||.||||||.|.||..||.|.||.||.||.||.||.||.|||||.
BPUM_0343 1103 CGATTAAGTTCTCACTTGGCCTTCTGTTTGCAGGGTTATCCTTCATCATC 1152
BSNT_00655___ 1141 ATGGT-ATTCCCTG-CTATGCAAG--------GAAAAGAAGCACTCGTAA 1180
|||.| ||| |||| ||| ||.| |||.| ||||.||.|
BPUM_0343 1153 ATGATCATT-CCTGCCTA--CATGTCTGGTCCGAATA----CACTTGTGA 1195
BSNT_00655___ 1181 GCCCGCTTTGGCTTGTTCTCAGCTTCCTGCTTGTCGTGCTTGGAGAGCTG 1230
||||..|.|||||.|||||.||||||.|.|||||||||.|.|||||.||.
BPUM_0343 1196 GCCCATTATGGCTCGTTCTGAGCTTCTTCCTTGTCGTGATCGGAGAACTC 1245
BSNT_00655___ 1231 TGCCTGTCTCCAGTCGGTTTATCCGTGACAACGAAACTGGCACCAGCTGC 1280
|||.|.||.||.||.||..|.||.|.||||||.|||||||||||.|||||
BPUM_0343 1246 TGCTTATCACCTGTTGGGCTGTCAGCGACAACAAAACTGGCACCTGCTGC 1295
BSNT_00655___ 1281 CTTCTCTGCACAGACAATGAGTATGTGGTTTCTGACGAACGCAGCAGCCC 1330
.|||||.||.||.||.|||||..|.|||||.||..|.||.|||...||.|
BPUM_0343 1296 TTTCTCAGCGCAAACGATGAGCCTTTGGTTCCTTTCAAATGCAATGGCAC 1345
BSNT_00655___ 1331 AAGCGATCAATGCCCAAGTAGCCGGATTGTTTGATAAAATTCCTGAAACA 1380
|.||||||||.||.|||||.|.|..|.|||||||||||.|.||.|||||.
BPUM_0343 1346 AGGCGATCAACGCGCAAGTGGTCAAACTGTTTGATAAAGTCCCAGAAACC 1395
BSNT_00655___ 1381 ATGTACTTCGGCACCATCGGTTTGATTTCTATCGTTCTTGGCGGCATTCT 1430
.|.||.|||||.|.|||.||.|||.||.|.||||||.|..|.|| |.|
BPUM_0343 1396 GTTTATTTCGGTATCATTGGATTGCTTGCCATCGTTTTATGTGG---TGT 1442
BSNT_00655___ 1431 CCTGCTGCTCT---CGCCGATGATCAAACGCGCGATGAAAGGGGTCTTAT 1477
..||||.|||| |.||..||||.||....||||||||||||.| |.||
BPUM_0343 1443 GATGCTACTCTTAACACCAGTGATTAAGAAAGCGATGAAAGGGAT-TCAT 1491
BSNT_00655___ 1478 AA- 1479
.|
BPUM_0343 1492 TAA 1494
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