Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00635 and BPUM_0327

See Amino acid alignment / Visit BSNT_00635 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:25
# Commandline: needle
#    -asequence dna-align/BSNT_00635.1.24716.seq
#    -bsequence dna-align/BPUM_0327___sfp.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00635-BPUM_0327___sfp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00635-BPUM_0327___sfp.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00635
# 2: BPUM_0327___sfp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     438/775 (56.5%)
# Similarity:   438/775 (56.5%)
# Gaps:         182/775 (23.5%)
# Score: 985.0
# 
#
#=======================================

BSNT_00635         1 ATGAAGAT-------------TTACGGAATTTATATGGACCGCCCGCTTT     37
                     ||||||||             ||||...|||||.|| |||..|   |.|.
BPUM_0327___s      1 ATGAAGATTTTCGCTATCCAATTACAACATTTAGAT-GACATC---CATG     46

BSNT_00635        38 CACAGGAAGAAAATGAACGGTTCATGTCTTTCATATCACCTGAAAAACGG     87
                     |||...||.|||.|||.|..||.|...|.||..|.|||.|||||||.||.
BPUM_0327___s     47 CACGAAAACAAATTGATCAATTGAAACCCTTTGTTTCAGCTGAAAAGCGC     96

BSNT_00635        88 GAGAAATGC--CGGA--------GATTTT--ATC-AT-AAAGAAGATGCT    123
                     |    .|||  |.||        ||||||  .|| || .|||||      
BPUM_0327___s     97 G----CTGCGGCTGAGCGCTTTCGATTTTTGGTCGATGCAAGAA------    136

BSNT_00635       124 CACCGCACCCTGCTGGGAGATGTGCTCGTTCGCTCAG--------TCATA    165
                         |.|||.||.|.||.||.||.||.||||| ||||        |.|||
BPUM_0327___s    137 ----GGACCTTGTTAGGTGAGGTACTGGTTCG-TCAGGTGATCCATGATA    181

BSNT_00635       166 AGCAGGCAGTATCAG----TTGGACAAATCCGATATCCGCTT------CA    205
                     .|.|.|    |||.|    |||     |||.|||   ||.||      ||
BPUM_0327___s    182 TGTACG----ATCTGCCTTTTG-----ATCAGAT---CGTTTTTGAAACA    219

BSNT_00635       206 GCACGCAGG--AATACGGGAAGCCGTG----------CATCCCTGATCTT    243
                     |     |||  |||  ||.||||| ||          |||.|||  ||||
BPUM_0327___s    220 G-----AGGGCAAT--GGCAAGCC-TGTTGTCCGGCACATTCCT--TCTT    259

BSNT_00635       244 CCCGACGCTCATTTCAACATTTCTCACTCCGGCCGCTGGGTCATTGGTGC    293
                            .||||||.||..||||||||||.||....||||||.|..|.||
BPUM_0327___s    260 -------TTCATTTTAATCTTTCTCACTCTGGTGATTGGGTCGTATGCGC    302

BSNT_00635       294 GTT---TGATTCACAGCCGATCGGCATAGATATCGAAAAAACGAAACCGA    340
                     ..|   ||||.||   ||..|.||.||.|||||.||..|.|..|||||||
BPUM_0327___s    303 AATAGATGATGCA---CCTGTAGGGATTGATATTGAGGAGATCAAACCGA    349

BSNT_00635       341 TCAGCCTTGAGATCGCCAAGCGCTTCTTTTCAAAAACAGAGTACAGCGA-    389
                     |....||.|.|||.||.||..|.||.||||||..|...|||||.|..|| 
BPUM_0327___s    350 TTGATCTAGCGATTGCTAAAAGATTTTTTTCAGCAGATGAGTATAAGGAT    399

BSNT_00635       390 --CCTTTTAGCAAAAGACAAGGACGAGCAGACAGACTATTTTTATCATCT    437
                       .||||.| |||..|.| ||.||| ||||..||.|||.||.|.||||.|
BPUM_0327___s    400 TTACTTTCA-CAATCGGC-AGAACG-GCAGGAAGCCTACTTCTTTCATTT    446

BSNT_00635       438 ATGGTCAATGAAAGAAAGC-TTTATCAA----ACAGGAAGGCAAAGGCTT    482
                     |||||||||| |||.|.|| ||||||||    ||.|||    ||.||.||
BPUM_0327___s    447 ATGGTCAATG-AAGGAGGCTTTTATCAAGCTGACTGGA----AAGGGATT    491

BSNT_00635       483 ATCGCT-TCCGCTTGATTCCTTTTCAGTGCGCCTG-CACCAGGACGGACA    530
                     ||| || |...|||..|||||||.|||..|||||| || .||||.|||||
BPUM_0327___s    492 ATC-CTATGGTCTTTCTTCCTTTACAGCCCGCCTGTCA-GAGGATGGACA    539

BSNT_00635       531 AGTATC--CATTGAGCTT-CCGGACAGCCAT---TCCCCATGCTATATCA    574
                     .|   |  ||||||..|| ||.||   .|||   .|.||.||||.|.|..
BPUM_0327___s    540 GG---CGACATTGACATTACCTGA---TCATGAGGCGCCCTGCTTTGTTC    583

BSNT_00635       575 AAACGTA-TGAGGTCGATCCCGGCTACAAAATGGCTGTATGCGC-CGCAC    622
                     ||||.|| |.| .|||||||.|.||||.|||||||.||.||..| ||.|.
BPUM_0327___s    584 AAACATACTCA-CTCGATCCTGCCTACCAAATGGCGGTGTGTACACGAAA    632

BSNT_00635       623 ACC--------CTGA-----TTTCCCCGAGGATATCACAATAGTCTCGTA    659
                     .||        ||||     ||     |||         |||.||||.|.
BPUM_0327___s    633 GCCTTCTGCGGCTGAACGTGTT-----GAG---------ATACTCTCTTG    668

BSNT_00635       660 CGAAGA-------GCT--TTTATAA    675
                     |.|.||       |||  |.|.|||
BPUM_0327___s    669 CCATGATGTGCTGGCTCGTCTTTAA    693


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.