Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00635 and BPUM_0327
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:25
# Commandline: needle
# -asequence dna-align/BSNT_00635.1.24716.seq
# -bsequence dna-align/BPUM_0327___sfp.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00635-BPUM_0327___sfp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00635-BPUM_0327___sfp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00635
# 2: BPUM_0327___sfp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity: 438/775 (56.5%)
# Similarity: 438/775 (56.5%)
# Gaps: 182/775 (23.5%)
# Score: 985.0
#
#
#=======================================
BSNT_00635 1 ATGAAGAT-------------TTACGGAATTTATATGGACCGCCCGCTTT 37
|||||||| ||||...|||||.|| |||..| |.|.
BPUM_0327___s 1 ATGAAGATTTTCGCTATCCAATTACAACATTTAGAT-GACATC---CATG 46
BSNT_00635 38 CACAGGAAGAAAATGAACGGTTCATGTCTTTCATATCACCTGAAAAACGG 87
|||...||.|||.|||.|..||.|...|.||..|.|||.|||||||.||.
BPUM_0327___s 47 CACGAAAACAAATTGATCAATTGAAACCCTTTGTTTCAGCTGAAAAGCGC 96
BSNT_00635 88 GAGAAATGC--CGGA--------GATTTT--ATC-AT-AAAGAAGATGCT 123
| .||| |.|| |||||| .|| || .|||||
BPUM_0327___s 97 G----CTGCGGCTGAGCGCTTTCGATTTTTGGTCGATGCAAGAA------ 136
BSNT_00635 124 CACCGCACCCTGCTGGGAGATGTGCTCGTTCGCTCAG--------TCATA 165
|.|||.||.|.||.||.||.||.||||| |||| |.|||
BPUM_0327___s 137 ----GGACCTTGTTAGGTGAGGTACTGGTTCG-TCAGGTGATCCATGATA 181
BSNT_00635 166 AGCAGGCAGTATCAG----TTGGACAAATCCGATATCCGCTT------CA 205
.|.|.| |||.| ||| |||.||| ||.|| ||
BPUM_0327___s 182 TGTACG----ATCTGCCTTTTG-----ATCAGAT---CGTTTTTGAAACA 219
BSNT_00635 206 GCACGCAGG--AATACGGGAAGCCGTG----------CATCCCTGATCTT 243
| ||| ||| ||.||||| || |||.||| ||||
BPUM_0327___s 220 G-----AGGGCAAT--GGCAAGCC-TGTTGTCCGGCACATTCCT--TCTT 259
BSNT_00635 244 CCCGACGCTCATTTCAACATTTCTCACTCCGGCCGCTGGGTCATTGGTGC 293
.||||||.||..||||||||||.||....||||||.|..|.||
BPUM_0327___s 260 -------TTCATTTTAATCTTTCTCACTCTGGTGATTGGGTCGTATGCGC 302
BSNT_00635 294 GTT---TGATTCACAGCCGATCGGCATAGATATCGAAAAAACGAAACCGA 340
..| ||||.|| ||..|.||.||.|||||.||..|.|..|||||||
BPUM_0327___s 303 AATAGATGATGCA---CCTGTAGGGATTGATATTGAGGAGATCAAACCGA 349
BSNT_00635 341 TCAGCCTTGAGATCGCCAAGCGCTTCTTTTCAAAAACAGAGTACAGCGA- 389
|....||.|.|||.||.||..|.||.||||||..|...|||||.|..||
BPUM_0327___s 350 TTGATCTAGCGATTGCTAAAAGATTTTTTTCAGCAGATGAGTATAAGGAT 399
BSNT_00635 390 --CCTTTTAGCAAAAGACAAGGACGAGCAGACAGACTATTTTTATCATCT 437
.||||.| |||..|.| ||.||| ||||..||.|||.||.|.||||.|
BPUM_0327___s 400 TTACTTTCA-CAATCGGC-AGAACG-GCAGGAAGCCTACTTCTTTCATTT 446
BSNT_00635 438 ATGGTCAATGAAAGAAAGC-TTTATCAA----ACAGGAAGGCAAAGGCTT 482
|||||||||| |||.|.|| |||||||| ||.||| ||.||.||
BPUM_0327___s 447 ATGGTCAATG-AAGGAGGCTTTTATCAAGCTGACTGGA----AAGGGATT 491
BSNT_00635 483 ATCGCT-TCCGCTTGATTCCTTTTCAGTGCGCCTG-CACCAGGACGGACA 530
||| || |...|||..|||||||.|||..|||||| || .||||.|||||
BPUM_0327___s 492 ATC-CTATGGTCTTTCTTCCTTTACAGCCCGCCTGTCA-GAGGATGGACA 539
BSNT_00635 531 AGTATC--CATTGAGCTT-CCGGACAGCCAT---TCCCCATGCTATATCA 574
.| | ||||||..|| ||.|| .||| .|.||.||||.|.|..
BPUM_0327___s 540 GG---CGACATTGACATTACCTGA---TCATGAGGCGCCCTGCTTTGTTC 583
BSNT_00635 575 AAACGTA-TGAGGTCGATCCCGGCTACAAAATGGCTGTATGCGC-CGCAC 622
||||.|| |.| .|||||||.|.||||.|||||||.||.||..| ||.|.
BPUM_0327___s 584 AAACATACTCA-CTCGATCCTGCCTACCAAATGGCGGTGTGTACACGAAA 632
BSNT_00635 623 ACC--------CTGA-----TTTCCCCGAGGATATCACAATAGTCTCGTA 659
.|| |||| || ||| |||.||||.|.
BPUM_0327___s 633 GCCTTCTGCGGCTGAACGTGTT-----GAG---------ATACTCTCTTG 668
BSNT_00635 660 CGAAGA-------GCT--TTTATAA 675
|.|.|| ||| |.|.|||
BPUM_0327___s 669 CCATGATGTGCTGGCTCGTCTTTAA 693
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