Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00631 and BPUM_0325
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:25
# Commandline: needle
# -asequence dna-align/BSNT_00631___ycxC.1.24716.seq
# -bsequence dna-align/BPUM_0325___ycxC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00631___ycxC-BPUM_0325___ycxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00631___ycxC-BPUM_0325___ycxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00631___ycxC
# 2: BPUM_0325___ycxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 592/1007 (58.8%)
# Similarity: 592/1007 (58.8%)
# Gaps: 160/1007 (15.9%)
# Score: 1436.5
#
#
#=======================================
BSNT_00631___ 1 ATGG----TTAAACATCAGCAAGC--------CCCCGCTTATATAGCGGC 38
.||| ||.|| |.|||.|||| ||.|| ||| |||
BPUM_0325___y 1 GTGGACATTTCAA-AACAGAAAGCGTATGCTGCCGCG-----ATA--GGC 42
BSNT_00631___ 39 TATTTTATATTCGTTCATTATCGGTTTATCCTTTCTATTCGTAAAAATCG 88
||....| ||.||||| |||||.||.|||.|.||.||.|||||.|
BPUM_0325___y 43 TACGCGA----CGATCATT---GGTTTTTCATTTTTGTTTGTCAAAATTG 85
BSNT_00631___ 89 CACTGCAAACAGCAGAGCCGTTTGATATTTTGGCGCATCGGTTCACCATT 138
||.|..||.||||..|.||..|||||.|.|||||.|||||.||.|||.||
BPUM_0325___y 86 CATTAGAATCAGCGAACCCAATTGATTTATTGGCACATCGCTTTACCGTT 135
BSNT_00631___ 139 GCGTTTGCTGCGGCGA------CTGTACCGATCTTATTCGGCTGGGTAAA 182
.|.|||||.||.|| | ||||..|.|| ||.|.|| |||
BPUM_0325___y 136 TCTTTTGCAGCCGC-ACTATTGCTGTTTCCAT-TTTTACG-------AAA 176
BSNT_00631___ 183 GCTATCA--ATCCGCGT--------AAAGGACGTCAT-TGC----CATTT 217
| | ||||||.| ||.|| |||.|| |.| |||..
BPUM_0325___y 177 G-----AAGATCCGCCTCTCCATTCAATGG-CGTGATCTTCTCTACATCG 220
BSNT_00631___ 218 TGCCGCTCGCCCTGCTGTATCCCGCGTTATTTTTCAGC-TTTCAGGCATT 266
|.|||.|..||.||||.|||||.|.|||.||||| .|| |||||.|.||.
BPUM_0325___y 221 TACCGTTTTCCTTGCTTTATCCTGTGTTGTTTTT-TGCTTTTCAAGTATG 269
BSNT_00631___ 267 CGGCCTTGTGTACTCGTCCTCCTCTGAAGCGGGAATTATTCAGGCAGCCA 316
.||.||..||||..|.||.||.||.||.||.||.|||||.||||||.|.|
BPUM_0325___y 270 GGGGCTGATGTATACCTCTTCGTCAGAGGCTGGTATTATACAGGCAACGA 319
BSNT_00631___ 317 TTCCGATTTTCACGATGGTCTTTGCCGCTTATGTTTTAAAGGAACGCCCA 366
||||.|||||.||.|||||..|.|||||.|...||||||||||||||.|.
BPUM_0325___y 320 TTCCTATTTTAACAATGGTGCTGGCCGCGTGGTTTTTAAAGGAACGCGCG 369
BSNT_00631___ 367 ACGTGGACGCAAAAGGGGTTCACGGTTTTATCCGT-TGCCGGCGTCATGT 415
||.||||..|||..|..|||.||..||.|.||.|| || |||.||.|||.
BPUM_0325___y 370 ACATGGATCCAAGTGCTGTTTACCATTCTTTCGGTGTG-CGGAGTGATGC 418
BSNT_00631___ 416 TTATTTTTGTGATGAAAGGCGTTGACGT---GGAATCAGCCAGCTTAAAA 462
||.|.||.||.|||||.||..||||.|| |.|.|||..|| |.|..
BPUM_0325___y 419 TTCTCTTCGTCATGAAGGGAATTGATGTAAAGCATTCACACA---TGATC 465
BSNT_00631___ 463 GGGTCTTTGCTGATCCTATTGTCCGCTTTGTCCT-CAGCGATG--TACA- 508
||.|.|.|.|||||..||.|.||.||.||.|||| ||| || ||||
BPUM_0325___y 466 GGCTATGTACTGATATTACTTTCAGCCTTATCCTCCAG---TGCATACAG 512
BSNT_00631___ 509 -ATACTGCTGCCAGAAAAATGACGCAGCGGTTCAAGCTGACCGAGCTCAC 557
.||.| ||||.|....||.||.|.|||.|||.|..|.|..||.|||||
BPUM_0325___y 513 TGTATT--TGCCCGGGTCATTACACGGCGCTTCCATGTAATTGAACTCAC 560
BSNT_00631___ 558 CTACATCATGTCAGCCATCGGCTTTGTCGTCTTCAACGCCATCGCCCTTG 607
.|.|.|.|||.||..|.|.||.|||.||.|||||||.|||...||.||..
BPUM_0325___y 561 TTTCGTGATGACATTCTTTGGATTTATCTTCTTCAATGCCGCTGCGCTCA 610
BSNT_00631___ 608 TGCGTCAT---------GGAGCGGCGGGAACAGTCGGCACTTATTTTCTG 648
|.||.||| |||.| |||| |.|||.| |||||.|
BPUM_0325___y 611 TTCGGCATTCAGTAAACGGAAC------AACA--CTGCAAT--TTTTCAG 650
BSNT_00631___ 649 CC--GTTCCGGGAGCCCGGCTTCGTTCTCGCCATTG-TGTATTTGGGCGT 695
|| .||.| ..|.||...|||.| |.|.|.||.|| |.|.|||.|||.|
BPUM_0325___y 651 CCCATTTAC-ACAACCATCCTTTG-TATGGTCAATGCTCTTTTTAGGCAT 698
BSNT_00631___ 696 GCTGTCTTCACTTGTCACTTCATTTCTGTCTAACTATACGCTGTCGCGAA 745
.||.|||||||||.||||..|||.|.|.||.||||||.|.||.||.|...
BPUM_0325___y 699 TCTTTCTTCACTTCTCACAGCATATTTATCAAACTATGCCCTTTCCCAGC 748
BSNT_00631___ 746 TTGAGGCGTTTAAAATGAGTGCTTTTAATCATGTATCTACCATTGTGACG 795
||||.|||...||..|.||....|||||..||.|||||.|..||.|.||
BPUM_0325___y 749 TTGAAGCGGCAAAGGTCAGCATCTTTAACAATTTATCTGCGTTTATTAC- 797
BSNT_00631___ 796 ATGATT----GCAGGAGTTATGATTCTCAACGAAAGCCTGGCCTGGTATC 841
|.| ||.||.|||.|.|||.|..|.||||...|.|..|||||||
BPUM_0325___y 798 ---AGTCGCCGCTGGGGTTCTCATTTTACATGAAACAATTGATTGGTATC 844
BSNT_00631___ 842 ATCTTGCCGGGGCTGT--TTGTATTATGATTGGCG-------TGGTGGGG 882
||||...|||.|.||| |.| |.||||||| |||.|||
BPUM_0325___y 845 ATCTCATCGGAGGTGTGCTGG-----TCATTGGCGGAGTGATTGGCGGG- 888
BSNT_00631___ 883 AGCAATATCAATCTGGAGAAAAAAACAAAGCGCCCTGGTATGCCTGCAAA 932
|||.|||..||.|| || ||.||.|.| ||
BPUM_0325___y 889 ---------AATGTGGTAAAGAA--------GC---GGAATTCAT--AA- 915
BSNT_00631___ 933 AAAATGA 939
BPUM_0325___y 915 ------- 915
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